Field Guide to Algae and Other “Scums” in Ponds, Lakes, Streams and Rivers
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The 2014 Golden Gate National Parks Bioblitz - Data Management and the Event Species List Achieving a Quality Dataset from a Large Scale Event
National Park Service U.S. Department of the Interior Natural Resource Stewardship and Science The 2014 Golden Gate National Parks BioBlitz - Data Management and the Event Species List Achieving a Quality Dataset from a Large Scale Event Natural Resource Report NPS/GOGA/NRR—2016/1147 ON THIS PAGE Photograph of BioBlitz participants conducting data entry into iNaturalist. Photograph courtesy of the National Park Service. ON THE COVER Photograph of BioBlitz participants collecting aquatic species data in the Presidio of San Francisco. Photograph courtesy of National Park Service. The 2014 Golden Gate National Parks BioBlitz - Data Management and the Event Species List Achieving a Quality Dataset from a Large Scale Event Natural Resource Report NPS/GOGA/NRR—2016/1147 Elizabeth Edson1, Michelle O’Herron1, Alison Forrestel2, Daniel George3 1Golden Gate Parks Conservancy Building 201 Fort Mason San Francisco, CA 94129 2National Park Service. Golden Gate National Recreation Area Fort Cronkhite, Bldg. 1061 Sausalito, CA 94965 3National Park Service. San Francisco Bay Area Network Inventory & Monitoring Program Manager Fort Cronkhite, Bldg. 1063 Sausalito, CA 94965 March 2016 U.S. Department of the Interior National Park Service Natural Resource Stewardship and Science Fort Collins, Colorado The National Park Service, Natural Resource Stewardship and Science office in Fort Collins, Colorado, publishes a range of reports that address natural resource topics. These reports are of interest and applicability to a broad audience in the National Park Service and others in natural resource management, including scientists, conservation and environmental constituencies, and the public. The Natural Resource Report Series is used to disseminate comprehensive information and analysis about natural resources and related topics concerning lands managed by the National Park Service. -
The Diatoms Big Significance of Tiny Glass Houses
GENERAL ¨ ARTICLE The Diatoms Big Significance of Tiny Glass Houses Aditi Kale and Balasubramanian Karthick Diatoms are unique microscopic algae having intricate cell walls made up of silica. They are the major phytoplankton in aquatic ecosystems and account for 20–25% of the oxygen release and carbon fixation in the world. Their most charac- teristic features are mechanisms they have evolved to utilize silica. Due to their distinctive adaptations and ecology, they (left) Aditi Kale is a PhD student with the are used in various fields like biomonitoring, paleoecology, Biodiversity and nanotechnology and forensics. Paleobiology group of Agharkar Research Introduction Institute. She is studying the biogeography of Diatoms (Class: Bacillariophyceae) are unique microscopic al- freshwater diatoms in gae containing silica and having distinct geometrical shapes. Western Ghats for her They are unicellular, eukaryotic and photosynthetic organisms. thesis. Their cell size ranges between 5 µm–0.5 mm. They occur in wet (right) Balasubramanian or moist places where photosynthesis is possible. Diatoms are Karthick is Scientist with Biodiversity and either planktonic (free-floating) or benthic (attached to a substra- Paleobiology group of tum) in Nature (Figure 1). The individuals are solitary or some- Agharkar Research times form colonies. Diatoms are mostly non-motile; however, Institute. His interests some benthic diatoms have a specialized raphe system1 that include diatom taxonomy and ecology, microbial secretes mucilage to attach or glide along a surface. They are also biogeography,andaquatic known to form biofilms, i. e., layers of tightly attached cells of ecology. microorganisms. Biofilms are formed on a solid surface and are often surrounded by extra-cellular fluids. -
Public Swimming Pools List of Director Approved Colors
Public Swimming Pools List of Director approved colors In accordance with the Ohio Administrative Code (OAC) rules 3701-31-02(G)(2) and (3) and 5.1(C)(1)(b) "the interior surfaces of pools and spas shall be painted white, unless the color is approved by the director." This requirement became effective Jan. 1, 1999 and was revised effective April 1, 2011; and applies to new pools and spas as well as existing pools/spas that will be repainted or will receive a new finish. The colors listed below were submitted to the Ohio Department of Health (ODH) and have been approved. This list does not apply to primer colors. This list also applies to other colored finishes such as tile and pool/spa liners. This list may be periodically revised to add or delete colors. If you have any questions, please call the Public Swimming Pool Program at 614-644-7438. This is not a comprehensive list: any color may be submitted by the manufacturer and be evaluated on a case by case basis. Black or dark lane markers and target marks are exempted from this requirement provided that they meet the standards of the appropriate governing body. Submittals may be sent to: Ohio Department of Health Bureau of Environmental Health and Radiation Protection 246 North High Street Columbus, OH 43215 Attn: Public Swimming Pool Program Any logos or other unique artwork proposed for the pool/spa bottom must be submitted to and approved by ODH. Contact the Public Swimming Pool Program for additional information about logo submissions. -
Azolla-Anabaena Symbiosis-From Traditional Agriculture to Biotechnology
Indian Journal of Biotechnology Vol 2, January 2003, pp 26-37 Azolla-Anabaena Symbiosis-From Traditional Agriculture to Biotechnology Anjuli Pabby, Radha Prasanna and P K Singh* National Centre for Conservation and Utilization of Blue-Green Algae, Indian Agricultural Research Institute, New Delhi 110 012, India The Azolla - Anabaena symbiosis has attracted attention as a biofertilizer worldwide, especially in South East Asia. But its utilization and genetic improvement has been limited mainly due to problems associated with the isolation and characterization of cyanobionts and the relative sensitivity of the fern to extremes of temperature and light intensity. This paper reviews the historical background of Azolla, its metabolic capabilities and present day utilization in agriculture. An outline of biotechnological interventions, carried out in India and abroad, is also discussed for a better understanding of the symbiotic interactions, which can go a long way in further exploitation of this association in agriculture and environmental management. Keywords: Azolla, Anabaena, biofertilizer, fingerprinting, symbiont Introduction food and medicine, besides its role in environmental Azolla is a small aquatic fern of demonstrated management and as controlling agent for weeds and agronomic significance in both developed and mosquitoes. It also improves water quality by removal developing countries (Singh, 1979a; Lumpkin & of excess quantities of nitrate and phosphorus and is Plucknett, 1980; Watanabe, 1982; Giller, 2002). The also used as fodder, feed for fish, ducks and rabbits association between Azolla and Anabaena azollae is a (Wagner, 1997). Besides its extensive use as a N- symbiotic one, wherein the eukaryotic partner Azolla supplement in rice-based ecosystems, it has also been houses the prokaryotic endosymbiont in its leaf used in other crops such as taro, wheat, tomato and cavities and provides carbon sources and in turn banana (Van Hove, 1989; Marwaha et al. -
1 Paleobotanical Proxies for Early Eocene Climates and Ecosystems in Northern North 2 America from Mid to High Latitudes 3 4 Christopher K
https://doi.org/10.5194/cp-2020-32 Preprint. Discussion started: 24 March 2020 c Author(s) 2020. CC BY 4.0 License. 1 Paleobotanical proxies for early Eocene climates and ecosystems in northern North 2 America from mid to high latitudes 3 4 Christopher K. West1, David R. Greenwood2, Tammo Reichgelt3, Alexander J. Lowe4, Janelle M. 5 Vachon2, and James F. Basinger1. 6 1 Dept. of Geological Sciences, University of Saskatchewan, 114 Science Place, Saskatoon, 7 Saskatchewan, S7N 5E2, Canada. 8 2 Dept. of Biology, Brandon University, 270-18th Street, Brandon, Manitoba R7A 6A9, Canada. 9 3 Department of Geosciences, University of Connecticut, Beach Hall, 354 Mansfield Rd #207, 10 Storrs, CT 06269, U.S.A. 11 4 Dept. of Biology, University of Washington, Seattle, WA 98195-1800, U.S.A. 12 13 Correspondence to: C.K West ([email protected]) 14 15 Abstract. Early Eocene climates were globally warm, with ice-free conditions at both poles. Early 16 Eocene polar landmasses supported extensive forest ecosystems of a primarily temperate biota, 17 but also with abundant thermophilic elements such as crocodilians, and mesothermic taxodioid 18 conifers and angiosperms. The globally warm early Eocene was punctuated by geologically brief 19 hyperthermals such as the Paleocene-Eocene Thermal Maximum (PETM), culminating in the 20 Early Eocene Climatic Optimum (EECO), during which the range of thermophilic plants such as 21 palms extended into the Arctic. Climate models have struggled to reproduce early Eocene Arctic 22 warm winters and high precipitation, with models invoking a variety of mechanisms, from 23 atmospheric CO2 levels that are unsupported by proxy evidence, to the role of an enhanced 24 hydrological cycle to reproduce winters that experienced no direct solar energy input yet remained 25 wet and above freezing. -
Anoxygenic Photosynthesis in Photolithotrophic Sulfur Bacteria and Their Role in Detoxication of Hydrogen Sulfide
antioxidants Review Anoxygenic Photosynthesis in Photolithotrophic Sulfur Bacteria and Their Role in Detoxication of Hydrogen Sulfide Ivan Kushkevych 1,* , Veronika Bosáková 1,2 , Monika Vítˇezová 1 and Simon K.-M. R. Rittmann 3,* 1 Department of Experimental Biology, Faculty of Science, Masaryk University, 62500 Brno, Czech Republic; [email protected] (V.B.); [email protected] (M.V.) 2 Department of Biology, Faculty of Medicine, Masaryk University, 62500 Brno, Czech Republic 3 Archaea Physiology & Biotechnology Group, Department of Functional and Evolutionary Ecology, Universität Wien, 1090 Vienna, Austria * Correspondence: [email protected] (I.K.); [email protected] (S.K.-M.R.R.); Tel.: +420-549-495-315 (I.K.); +431-427-776-513 (S.K.-M.R.R.) Abstract: Hydrogen sulfide is a toxic compound that can affect various groups of water microorgan- isms. Photolithotrophic sulfur bacteria including Chromatiaceae and Chlorobiaceae are able to convert inorganic substrate (hydrogen sulfide and carbon dioxide) into organic matter deriving energy from photosynthesis. This process takes place in the absence of molecular oxygen and is referred to as anoxygenic photosynthesis, in which exogenous electron donors are needed. These donors may be reduced sulfur compounds such as hydrogen sulfide. This paper deals with the description of this metabolic process, representatives of the above-mentioned families, and discusses the possibility using anoxygenic phototrophic microorganisms for the detoxification of toxic hydrogen sulfide. Moreover, their general characteristics, morphology, metabolism, and taxonomy are described as Citation: Kushkevych, I.; Bosáková, well as the conditions for isolation and cultivation of these microorganisms will be presented. V.; Vítˇezová,M.; Rittmann, S.K.-M.R. -
Limits of Life on Earth Some Archaea and Bacteria
Limits of life on Earth Thermophiles Temperatures up to ~55C are common, but T > 55C is Some archaea and bacteria (extremophiles) can live in associated usually with geothermal features (hot springs, environments that we would consider inhospitable to volcanic activity etc) life (heat, cold, acidity, high pressure etc) Thermophiles are organisms that can successfully live Distinguish between growth and survival: many organisms can survive intervals of harsh conditions but could not at high temperatures live permanently in such conditions (e.g. seeds, spores) Best studied extremophiles: may be relevant to the Interest: origin of life. Very hot environments tolerable for life do not seem to exist elsewhere in the Solar System • analogs for extraterrestrial environments • `extreme’ conditions may have been more common on the early Earth - origin of life? • some unusual environments (e.g. subterranean) are very widespread Extraterrestrial Life: Spring 2008 Extraterrestrial Life: Spring 2008 Grand Prismatic Spring, Yellowstone National Park Hydrothermal vents: high pressure in the deep ocean allows liquid water Colors on the edge of the at T >> 100C spring are caused by different colonies of thermophilic Vents emit superheated water (300C or cyanobacteria and algae more) that is rich in minerals Hottest water is lifeless, but `cooler’ ~50 species of such thermophiles - mostly archae with some margins support array of thermophiles: cyanobacteria and anaerobic photosynthetic bacteria oxidize sulphur, manganese, grow on methane + carbon monoxide etc… Sulfolobus: optimum T ~ 80C, minimum 60C, maximum 90C, also prefer a moderately acidic pH. Live by oxidizing sulfur Known examples can grow (i.e. multiply) at temperatures which is abundant near hot springs. -
A Morphological Re-Description of Ploeotia Pseudanisonema, and Phylogenetic Analysis of the Genus Ploeotia
A Morphological Re-Description of Ploeotia pseudanisonema, and Phylogenetic Analysis of the Genus Ploeotia by Andrew Buren Brooks (Under the direction of Mark A. Farmer) Abstract The genus Ploeotia represents a group of small, colorless, heterotrophic euglenids commonly found in shallow-water marine sediments. Species belonging to this genus have histori- cally been poorly described and studied. However, a Group I intron discovered within the small subunit ribosomal DNA gene of Ploeotia costata, makes P. costata the only euglena- zoan known to possess an actively splicing Group I intron. This intron contains conserved secondary structures that indicate monophyly with introns found in Stramenopiles and Ban- giales red algae. This project describes the internal and external morphology of a related species, Ploeotia pseudanisonema, using light and electron microscopy, and investigates the possibility of a Group I intron within P. pseudanisonema. Using recently obtained SSU rRNA sequences, we also examine the phylogeny of Ploeotia, and comment on the relationship of the genus Keelungia to Ploeotia. Index words: Ploeotia pseudanisonema, Ploeotia costata, Ploeotia vitrea, Keelungia pulex, Transmission electron microscopy, Scanning electron microscopy, Small subunit rRNA, Euglenozoan Phylogeny A Morphological Re-Description of Ploeotia pseudanisonema, and Phylogenetic Analysis of the Genus Ploeotia by Andrew Buren Brooks B.S., University of Alabama, 2009 A Thesis Submitted to the Graduate Faculty of The University of Georgia in Partial Fulfillment of the Requirements for the Degree Master of Science Athens, Georgia 2010 c 2014 Andrew Buren Brooks All Right Reserved A Morphological Re-Description of Ploeotia pseudanisonema, and Phylogenetic Analysis of the Genus Ploeotia by Andrew Buren Brooks Approved: Major Professor: Mark A. -
Protocols for Monitoring Harmful Algal Blooms for Sustainable Aquaculture and Coastal Fisheries in Chile (Supplement Data)
Protocols for monitoring Harmful Algal Blooms for sustainable aquaculture and coastal fisheries in Chile (Supplement data) Provided by Kyoko Yarimizu, et al. Table S1. Phytoplankton Naming Dictionary: This dictionary was constructed from the species observed in Chilean coast water in the past combined with the IOC list. Each name was verified with the list provided by IFOP and online dictionaries, AlgaeBase (https://www.algaebase.org/) and WoRMS (http://www.marinespecies.org/). The list is subjected to be updated. Phylum Class Order Family Genus Species Ochrophyta Bacillariophyceae Achnanthales Achnanthaceae Achnanthes Achnanthes longipes Bacillariophyta Coscinodiscophyceae Coscinodiscales Heliopeltaceae Actinoptychus Actinoptychus spp. Dinoflagellata Dinophyceae Gymnodiniales Gymnodiniaceae Akashiwo Akashiwo sanguinea Dinoflagellata Dinophyceae Gymnodiniales Gymnodiniaceae Amphidinium Amphidinium spp. Ochrophyta Bacillariophyceae Naviculales Amphipleuraceae Amphiprora Amphiprora spp. Bacillariophyta Bacillariophyceae Thalassiophysales Catenulaceae Amphora Amphora spp. Cyanobacteria Cyanophyceae Nostocales Aphanizomenonaceae Anabaenopsis Anabaenopsis milleri Cyanobacteria Cyanophyceae Oscillatoriales Coleofasciculaceae Anagnostidinema Anagnostidinema amphibium Anagnostidinema Cyanobacteria Cyanophyceae Oscillatoriales Coleofasciculaceae Anagnostidinema lemmermannii Cyanobacteria Cyanophyceae Oscillatoriales Microcoleaceae Annamia Annamia toxica Cyanobacteria Cyanophyceae Nostocales Aphanizomenonaceae Aphanizomenon Aphanizomenon flos-aquae -
Getting to the Roots: a Developmental Genetic View of Root Anatomy and Function from Arabidopsis to Lycophytes
fpls-09-01410 September 21, 2018 Time: 17:3 # 1 REVIEW published: 25 September 2018 doi: 10.3389/fpls.2018.01410 Getting to the Roots: A Developmental Genetic View of Root Anatomy and Function From Arabidopsis to Lycophytes Frauke Augstein and Annelie Carlsbecker* Department of Organismal Biology, Physiological Botany and Linnean Centre for Plant Biology in Uppsala, Uppsala University, Uppsala, Sweden Roots attach plants to the ground and ensure efficient and selective uptake of water and nutrients. These functions are facilitated by the morphological and anatomical structures of the root, formed by the activity of the root apical meristem (RAM) and consecutive patterning and differentiation of specific tissues with distinct functions. Despite the importance of this plant organ, its evolutionary history is not clear, but fossils suggest that roots evolved at least twice, in the lycophyte (clubmosses and their allies) and in the euphyllophyte (ferns and seed plants) lineages. Both lycophyte and euphyllophyte roots grow indeterminately by the action of an apical meristem, which is protected by a root cap. They produce root hairs, and in most species the vascular stele is Edited by: guarded by a specialized endodermal cell layer. Hence, most of these traits must have Annette Becker, evolved independently in these lineages. This raises the question if the development Justus Liebig Universität Gießen, Germany of these apparently analogous tissues is regulated by distinct or homologous genes, Reviewed by: independently recruited from a common ancestor of lycophytes and euphyllophytes. Hongchang Cui, Currently, there are few studies of the genetic and molecular regulation of lycophyte Florida State University, United States and fern roots. -
Microorganisms – Protists: Euglena
Microorganisms – Protists: Euglena Euglena are unicellular organisms classified into the Kingdom Protista, and the Phylum Euglenophyta. All euglena have chloroplasts and can make their own food by photosynthesis. They are not completely autotrophic though, euglena can also absorb food from their environment. Euglena usually live in quiet ponds or puddles. Euglena move by a flagellum (plural flagella), which is a long whip-like structure that acts like a little motor. The flagellum is located on the anterior (front) end, and twirls in such a way as to pull the cell through the water. It is attached at an inward pocket called the reservoir. Color and label the reservoir grey. Color and label the flagellum black. The Euglena is unique in that it is both heterotrophic (must consume food) and autotrophic (can make its own food). Chloroplasts within the euglena trap sunlight that is used for photosynthesis and can be seen as several rod-like structures throughout the cell. Color and label the chloroplasts green. Euglena also have an eyespot at the anterior end that detects light, it can be seen near the reservoir. This helps the euglena find bright areas to gather sunlight to make their food. Color and label the eyespot red. Euglena can also gain nutrients by absorbing them across their cell membrane, hence they become heterotrophic when light is not available, and they cannot photosynthesize. The euglena has a stiff pellicle outside the cell membrane that helps it keep its shape, though the pellicle is somewhat flexible, and some euglena can be observed scrunching up and moving in an inchworm type fashion. -
Understanding the Interaction Between Anabaena Sp. and a Heterocyst-Specific Epibiont
Understanding the interaction between Anabaena sp. and a heterocyst-specific epibiont Iglika V. Pavlova MBL Microbial Diversity course 2005 Abstract Anabaena sp. and an associated heterocyst-specific epibiontic bacterium were isolated from School Street Marsh in Woods Hole, MA in 1997 during the Microbial Diversity course. A two-member culture of the cyanobacterium and the epibiont have been maintained at WHOI by John Waterbury. Anabaena species with similar heterocyst-specific epibionts have also been isolated from other locations (7, 8, 9). Successful culture of the epibiont separately from the School Street Marsh cyanobacterium was achieved on two occasions (1, 10), but the isolates were not preserved. The epibiont was identified to be an α-proteobacterium within the Rhizobiaceae group (10). The close and specific association between the cyanobacterium and the epibiont strongly suggests there might be a physiological benefit or benefits to the cyanobacterium, the epibiont, or to both partners. This study was designed to understand the potential benefits of the interaction for the epibiontic bacterium. Several approaches were used to isolate the epibiont in pure culture, unsuccessfully. This report describes the rationale for undertaking the project and the approaches used to isolate the epibiont, in the hopes that this will be useful information for the future isolation of an axenic epibiont culture. Rationale Cyanobacterial associations with heterotrophic bacteria from environmental isolates have been described before and have been implicated in increasing the growth of the cyanobacterium (5, 6, 7). Benefit to the cyanobacterium may be derived from a range of associations, including the presence of heterotrophic bacteria in the culture medium, attraction of such bacteria to cyanobacterial secretions (either along the whole filament, or secretions stemming from the heterocyst in filamentous bacteria), or the attachment of the bacterium to the cyanobacterium outer surface (5, 6, 7, 9).