Actin Nucleator Spire 1 Is a Regulator of Ectoplasmic Specialization in the Testis Qing Wen1,Nanli1,Xiangxiao 1,2,Wing-Yeelui3, Darren S
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A Computational Approach for Defining a Signature of Β-Cell Golgi Stress in Diabetes Mellitus
Page 1 of 781 Diabetes A Computational Approach for Defining a Signature of β-Cell Golgi Stress in Diabetes Mellitus Robert N. Bone1,6,7, Olufunmilola Oyebamiji2, Sayali Talware2, Sharmila Selvaraj2, Preethi Krishnan3,6, Farooq Syed1,6,7, Huanmei Wu2, Carmella Evans-Molina 1,3,4,5,6,7,8* Departments of 1Pediatrics, 3Medicine, 4Anatomy, Cell Biology & Physiology, 5Biochemistry & Molecular Biology, the 6Center for Diabetes & Metabolic Diseases, and the 7Herman B. Wells Center for Pediatric Research, Indiana University School of Medicine, Indianapolis, IN 46202; 2Department of BioHealth Informatics, Indiana University-Purdue University Indianapolis, Indianapolis, IN, 46202; 8Roudebush VA Medical Center, Indianapolis, IN 46202. *Corresponding Author(s): Carmella Evans-Molina, MD, PhD ([email protected]) Indiana University School of Medicine, 635 Barnhill Drive, MS 2031A, Indianapolis, IN 46202, Telephone: (317) 274-4145, Fax (317) 274-4107 Running Title: Golgi Stress Response in Diabetes Word Count: 4358 Number of Figures: 6 Keywords: Golgi apparatus stress, Islets, β cell, Type 1 diabetes, Type 2 diabetes 1 Diabetes Publish Ahead of Print, published online August 20, 2020 Diabetes Page 2 of 781 ABSTRACT The Golgi apparatus (GA) is an important site of insulin processing and granule maturation, but whether GA organelle dysfunction and GA stress are present in the diabetic β-cell has not been tested. We utilized an informatics-based approach to develop a transcriptional signature of β-cell GA stress using existing RNA sequencing and microarray datasets generated using human islets from donors with diabetes and islets where type 1(T1D) and type 2 diabetes (T2D) had been modeled ex vivo. To narrow our results to GA-specific genes, we applied a filter set of 1,030 genes accepted as GA associated. -
Vocabulario De Morfoloxía, Anatomía E Citoloxía Veterinaria
Vocabulario de Morfoloxía, anatomía e citoloxía veterinaria (galego-español-inglés) Servizo de Normalización Lingüística Universidade de Santiago de Compostela COLECCIÓN VOCABULARIOS TEMÁTICOS N.º 4 SERVIZO DE NORMALIZACIÓN LINGÜÍSTICA Vocabulario de Morfoloxía, anatomía e citoloxía veterinaria (galego-español-inglés) 2008 UNIVERSIDADE DE SANTIAGO DE COMPOSTELA VOCABULARIO de morfoloxía, anatomía e citoloxía veterinaria : (galego-español- inglés) / coordinador Xusto A. Rodríguez Río, Servizo de Normalización Lingüística ; autores Matilde Lombardero Fernández ... [et al.]. – Santiago de Compostela : Universidade de Santiago de Compostela, Servizo de Publicacións e Intercambio Científico, 2008. – 369 p. ; 21 cm. – (Vocabularios temáticos ; 4). - D.L. C 2458-2008. – ISBN 978-84-9887-018-3 1.Medicina �������������������������������������������������������������������������veterinaria-Diccionarios�������������������������������������������������. 2.Galego (Lingua)-Glosarios, vocabularios, etc. políglotas. I.Lombardero Fernández, Matilde. II.Rodríguez Rio, Xusto A. coord. III. Universidade de Santiago de Compostela. Servizo de Normalización Lingüística, coord. IV.Universidade de Santiago de Compostela. Servizo de Publicacións e Intercambio Científico, ed. V.Serie. 591.4(038)=699=60=20 Coordinador Xusto A. Rodríguez Río (Área de Terminoloxía. Servizo de Normalización Lingüística. Universidade de Santiago de Compostela) Autoras/res Matilde Lombardero Fernández (doutora en Veterinaria e profesora do Departamento de Anatomía e Produción Animal. -
Phagocytosis Dynamics Depends on Target Shape
Biophysical Journal Volume 105 September 2013 1143–1150 1143 Phagocytosis Dynamics Depends on Target Shape Debjani Paul,†‡6* Sarra Achouri,†6 Young-Zoon Yoon,† Jurgen Herre,§ Clare E. Bryant,{ and Pietro Cicuta† † ‡ Cavendish Laboratory, University of Cambridge, Cambridge, United Kingdom; Department of Biosciences and Bioengineering, § { Indian Institute of Technology Bombay, Powai, Mumbai, India; Department of Medicine and Department of Veterinary Medicine, University of Cambridge, Cambridge, United Kingdom ABSTRACT A complete understanding of phagocytosis requires insight into both its biochemical and physical aspects. One of the ways to explore the physical mechanism of phagocytosis is to probe whether and how the target properties (e.g., size, shape, surface states, stiffness, etc.) affect their uptake. Here we report an imaging-based method to explore phagocytosis kinetics, which is compatible with real-time imaging and can be used to validate existing reports using fixed and stained cells. We measure single-event engulfment time from a large number of phagocytosis events to compare how size and shape of targets determine their engulfment. The data shows an increase in the average engulfment time for increased target size, for spherical particles. The uptake time data on nonspherical particles confirms that target shape plays a more dominant role than target size for phagocytosis: Ellipsoids with an eccentricity of 0.954 and much smaller surface areas than spheres were taken up five times more slowly than spherical targets. INTRODUCTION Macrophages can engulf a wide variety of targets, such as the degradation of phagosomal contents and the induction invading pathogens, dead cells, foreign airborne particles of the appropriate immune responses. -
Applying Expression Profile Similarity for Discovery of Patient-Specific
bioRxiv preprint doi: https://doi.org/10.1101/172015; this version posted September 17, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. Applying expression profile similarity for discovery of patient-specific functional mutations Guofeng Meng Partner Institute of Computational Biology, Yueyang 333, Shanghai, China email: [email protected] Abstract The progress of cancer genome sequencing projects yields unprecedented information of mutations for numerous patients. However, the complexity of mutation profiles of patients hinders the further understanding of mechanisms of oncogenesis. One basic question is how to uncover mutations with functional impacts. In this work, we introduce a computational method to predict functional somatic mutations for each of patient by integrating mutation recurrence with similarity of expression profiles of patients. With this method, the functional mutations are determined by checking the mutation enrichment among a group of patients with similar expression profiles. We applied this method to three cancer types and identified the functional mutations. Comparison of the predictions for three cancer types suggested that most of the functional mutations were cancer-type-specific with one exception to p53. By checking prediction results, we found that our method effectively filtered non-functional mutations resulting from large protein sizes. In addition, this methods can also perform functional annotation to each patient to describe their association with signalling pathways or biological processes. In breast cancer, we predicted "cell adhesion" and other mutated gene associated terms to be significantly enriched among patients. -
Chloroplast Incorporation and Long-Term Photosynthetic Performance Through the Life Cycle in Laboratory Cultures of Elysia Timid
Chloroplast incorporation and long-term photosynthetic performance through the life cycle in laboratory cultures of Elysia timida (Sacoglossa, Heterobranchia) Schmitt et al. Schmitt et al. Frontiers in Zoology 2014, 11:5 http://www.frontiersinzoology.com/content/11/1/5 Schmitt et al. Frontiers in Zoology 2014, 11:5 http://www.frontiersinzoology.com/content/11/1/5 RESEARCH Open Access Chloroplast incorporation and long-term photosynthetic performance through the life cycle in laboratory cultures of Elysia timida (Sacoglossa, Heterobranchia) Valerie Schmitt1,2, Katharina Händeler2, Susanne Gunkel2, Marie-Line Escande3, Diedrik Menzel4, Sven B Gould2, William F Martin2 and Heike Wägele1* Abstract Introduction: The Mediterranean sacoglossan Elysia timida is one of the few sea slug species with the ability to sequester chloroplasts from its food algae and to subsequently store them in a functional state in the digestive gland cells for more than a month, during which time the plastids retain high photosynthetic activity (= long-term retention). Adult E. timida have been described to feed on the unicellular alga Acetabularia acetabulum in their natural environment. The suitability of E. timida as a laboratory model culture system including its food source was studied. Results: In contrast to the literature reporting that juvenile E. timida feed on Cladophora dalmatica first, and later on switch to the adult diet A. acetabulum, the juveniles in this study fed directly on A. acetabulum (young, non-calcified stalks); they did not feed on the various Cladophora spp. (collected from the sea or laboratory culture) offered. This could possibly hint to cryptic speciation with no clear morphological differences, but incipient ecological differentiation. -
Cldn19 Clic2 Clmp Cln3
NewbornDx™ Advanced Sequencing Evaluation When time to diagnosis matters, the NewbornDx™ Advanced Sequencing Evaluation from Athena Diagnostics delivers rapid, 5- to 7-day results on a targeted 1,722-genes. A2ML1 ALAD ATM CAV1 CLDN19 CTNS DOCK7 ETFB FOXC2 GLUL HOXC13 JAK3 AAAS ALAS2 ATP1A2 CBL CLIC2 CTRC DOCK8 ETFDH FOXE1 GLYCTK HOXD13 JUP AARS2 ALDH18A1 ATP1A3 CBS CLMP CTSA DOK7 ETHE1 FOXE3 GM2A HPD KANK1 AASS ALDH1A2 ATP2B3 CC2D2A CLN3 CTSD DOLK EVC FOXF1 GMPPA HPGD K ANSL1 ABAT ALDH3A2 ATP5A1 CCDC103 CLN5 CTSK DPAGT1 EVC2 FOXG1 GMPPB HPRT1 KAT6B ABCA12 ALDH4A1 ATP5E CCDC114 CLN6 CUBN DPM1 EXOC4 FOXH1 GNA11 HPSE2 KCNA2 ABCA3 ALDH5A1 ATP6AP2 CCDC151 CLN8 CUL4B DPM2 EXOSC3 FOXI1 GNAI3 HRAS KCNB1 ABCA4 ALDH7A1 ATP6V0A2 CCDC22 CLP1 CUL7 DPM3 EXPH5 FOXL2 GNAO1 HSD17B10 KCND2 ABCB11 ALDOA ATP6V1B1 CCDC39 CLPB CXCR4 DPP6 EYA1 FOXP1 GNAS HSD17B4 KCNE1 ABCB4 ALDOB ATP7A CCDC40 CLPP CYB5R3 DPYD EZH2 FOXP2 GNE HSD3B2 KCNE2 ABCB6 ALG1 ATP8A2 CCDC65 CNNM2 CYC1 DPYS F10 FOXP3 GNMT HSD3B7 KCNH2 ABCB7 ALG11 ATP8B1 CCDC78 CNTN1 CYP11B1 DRC1 F11 FOXRED1 GNPAT HSPD1 KCNH5 ABCC2 ALG12 ATPAF2 CCDC8 CNTNAP1 CYP11B2 DSC2 F13A1 FRAS1 GNPTAB HSPG2 KCNJ10 ABCC8 ALG13 ATR CCDC88C CNTNAP2 CYP17A1 DSG1 F13B FREM1 GNPTG HUWE1 KCNJ11 ABCC9 ALG14 ATRX CCND2 COA5 CYP1B1 DSP F2 FREM2 GNS HYDIN KCNJ13 ABCD3 ALG2 AUH CCNO COG1 CYP24A1 DST F5 FRMD7 GORAB HYLS1 KCNJ2 ABCD4 ALG3 B3GALNT2 CCS COG4 CYP26C1 DSTYK F7 FTCD GP1BA IBA57 KCNJ5 ABHD5 ALG6 B3GAT3 CCT5 COG5 CYP27A1 DTNA F8 FTO GP1BB ICK KCNJ8 ACAD8 ALG8 B3GLCT CD151 COG6 CYP27B1 DUOX2 F9 FUCA1 GP6 ICOS KCNK3 ACAD9 ALG9 -
Cell & Molecular Biology
BSC ZO- 102 B. Sc. I YEAR CELL & MOLECULAR BIOLOGY DEPARTMENT OF ZOOLOGY SCHOOL OF SCIENCES UTTARAKHAND OPEN UNIVERSITY BSCZO-102 Cell and Molecular Biology DEPARTMENT OF ZOOLOGY SCHOOL OF SCIENCES UTTARAKHAND OPEN UNIVERSITY Phone No. 05946-261122, 261123 Toll free No. 18001804025 Fax No. 05946-264232, E. mail [email protected] htpp://uou.ac.in Board of Studies and Programme Coordinator Board of Studies Prof. B.D.Joshi Prof. H.C.S.Bisht Retd.Prof. Department of Zoology Department of Zoology DSB Campus, Kumaun University, Gurukul Kangri, University Nainital Haridwar Prof. H.C.Tiwari Dr.N.N.Pandey Retd. Prof. & Principal Senior Scientist, Department of Zoology, Directorate of Coldwater Fisheries MB Govt.PG College (ICAR) Haldwani Nainital. Bhimtal (Nainital). Dr. Shyam S.Kunjwal Department of Zoology School of Sciences, Uttarakhand Open University Programme Coordinator Dr. Shyam S.Kunjwal Department of Zoology School of Sciences, Uttarakhand Open University Haldwani, Nainital Unit writing and Editing Editor Writer Dr.(Ms) Meenu Vats Dr.Mamtesh Kumari , Professor & Head Associate. Professor Department of Zoology, Department of Zoology DAV College,Sector-10 Govt. PG College Chandigarh-160011 Uttarkashi (Uttarakhand) Dr.Sunil Bhandari Asstt. Professor. Department of Zoology BGR Campus Pauri, HNB (Central University) Garhwal. Course Title and Code : Cell and Molecular Biology (BSCZO 102) ISBN : 978-93-85740-54-1 Copyright : Uttarakhand Open University Edition : 2017 Published By : Uttarakhand Open University, Haldwani, Nainital- 263139 Contents Course 1: Cell and Molecular Biology Course code: BSCZO102 Credit: 3 Unit Block and Unit title Page number Number Block 1 Cell Biology or Cytology 1-128 1 Cell Type : History and origin. -
Nomina Histologica Veterinaria, First Edition
NOMINA HISTOLOGICA VETERINARIA Submitted by the International Committee on Veterinary Histological Nomenclature (ICVHN) to the World Association of Veterinary Anatomists Published on the website of the World Association of Veterinary Anatomists www.wava-amav.org 2017 CONTENTS Introduction i Principles of term construction in N.H.V. iii Cytologia – Cytology 1 Textus epithelialis – Epithelial tissue 10 Textus connectivus – Connective tissue 13 Sanguis et Lympha – Blood and Lymph 17 Textus muscularis – Muscle tissue 19 Textus nervosus – Nerve tissue 20 Splanchnologia – Viscera 23 Systema digestorium – Digestive system 24 Systema respiratorium – Respiratory system 32 Systema urinarium – Urinary system 35 Organa genitalia masculina – Male genital system 38 Organa genitalia feminina – Female genital system 42 Systema endocrinum – Endocrine system 45 Systema cardiovasculare et lymphaticum [Angiologia] – Cardiovascular and lymphatic system 47 Systema nervosum – Nervous system 52 Receptores sensorii et Organa sensuum – Sensory receptors and Sense organs 58 Integumentum – Integument 64 INTRODUCTION The preparations leading to the publication of the present first edition of the Nomina Histologica Veterinaria has a long history spanning more than 50 years. Under the auspices of the World Association of Veterinary Anatomists (W.A.V.A.), the International Committee on Veterinary Anatomical Nomenclature (I.C.V.A.N.) appointed in Giessen, 1965, a Subcommittee on Histology and Embryology which started a working relation with the Subcommittee on Histology of the former International Anatomical Nomenclature Committee. In Mexico City, 1971, this Subcommittee presented a document entitled Nomina Histologica Veterinaria: A Working Draft as a basis for the continued work of the newly-appointed Subcommittee on Histological Nomenclature. This resulted in the editing of the Nomina Histologica Veterinaria: A Working Draft II (Toulouse, 1974), followed by preparations for publication of a Nomina Histologica Veterinaria. -
Acanthamoeba Is an Evolutionary Ancestor of Macrophages: a Myth Or Reality? Ruqaiyyah Siddiqui Aga Khan University
eCommons@AKU Department of Biological & Biomedical Sciences Medical College, Pakistan February 2012 Acanthamoeba is an evolutionary ancestor of macrophages: A myth or reality? Ruqaiyyah Siddiqui Aga Khan University Naveed Ahmed Khan Aga Khan University Follow this and additional works at: http://ecommons.aku.edu/pakistan_fhs_mc_bbs Part of the Biochemistry Commons Recommended Citation Siddiqui, R., Khan, N. (2012). Acanthamoeba is an evolutionary ancestor of macrophages: A myth or reality?. Experimental Parasitology, 130(2), 95-97. Available at: http://ecommons.aku.edu/pakistan_fhs_mc_bbs/16 Experimental Parasitology 130 (2012) 95–97 Contents lists available at SciVerse ScienceDirect Experimental Parasitology journal homepage: www.elsevier.com/locate/yexpr Minireview Acanthamoeba is an evolutionary ancestor of macrophages: A myth or reality? ⇑ Ruqaiyyah Siddiqui a, Naveed Ahmed Khan a,b, a Aga Khan University, Stadium Road, Karachi, Pakistan b School of Veterinary Medicine and Science, University of Nottingham, Sutton Bonington, England, UK article info abstract Article history: Given the remarkable similarities in cellular structure (morphological and ultra-structural features), Received 26 October 2011 molecular motility, biochemical physiology, ability to capture prey by phagocytosis and interactions with Received in revised form 17 November 2011 microbial pathogens, here we pose the question whether Acanthamoeba and macrophages are evolution- Accepted 19 November 2011 ary related. This is discussed in the light of evolution and functional aspects such as the astonishing Available online 28 November 2011 resemblance of many bacteria to infect and multiply inside human macrophages and amoebae in analo- gous ways. Further debate and studies will determine if Acanthamoeba is an evolutionary ancestor of Keywords: macrophages. Is this a myth or reality? Acanthamoeba Ó 2011 Elsevier Inc. -
Involvement of the Kinesin Family Members KIF4A and KIF5C In
Downloaded from http://jmg.bmj.com/ on March 10, 2015 - Published by group.bmj.com Cognitive and behavioural genetics ORIGINAL ARTICLE Involvement of the kinesin family members KIF4A and KIF5C in intellectual disability and synaptic Editor’s choice Scan to access more free content function Marjolein H Willemsen,1,2 Wei Ba,1,3,4 Willemijn M Wissink-Lindhout,1 Arjan P M de Brouwer,1,2 Stefan A Haas,5 Melanie Bienek,6 Hao Hu,6 Lisenka E L M Vissers,1,2 Hans van Bokhoven,1,2,3,4 Vera Kalscheuer,6 Nael Nadif Kasri,1,2,3,4 Tjitske Kleefstra1,2 For numbered affiliations see ABSTRACT genes in the development and functioning of the end of article. Introduction Kinesin superfamily (KIF) genes encode nervous system. Mice with homozygous knockout Kif1a 1b 2a 3a 3b 4a 5a 5b Correspondence to motor proteins that have fundamental roles in brain mutations in , , , , , , and Dr Nael Nadif Kasri, functioning, development, survival and plasticity by show various neurological phenotypes including Department of Cognitive regulating the transport of cargo along microtubules structural brain anomalies, decreased brain size, Neuroscience, Radboud within axons, dendrites and synapses. Mouse knockout loss of neurons, reduced rate of neuronal apoptosis university medical center, studies support these important functions in the nervous and perinatal lethality due to neurological pro- Nijmegen, The Netherlands; 4–12 Nael.NadifKasri@radboudumc. system. The role of KIF genes in intellectual disability (ID) blems. The embryonic lethality of knockout nl; has so far received limited attention, although previous mice for Kif2a, Kif3a and 3b, and Kif5b suggest Dr Tjitske Kleefstra, studies have suggested that many ID genes impinge on that these Kif genes have an important function in Department of Human synaptic function. -
Site-Specific and Common Prostate Cancer Metastasis Genes
life Article Site-Specific and Common Prostate Cancer Metastasis Genes as Suggested by Meta-Analysis of Gene Expression Data Ivana Samaržija 1,2 1 Laboratory for Epigenomics, Division of Molecular Medicine, Ruder¯ Boškovi´cInstitute, Bijeniˇcka54, 10000 Zagreb, Croatia; [email protected] 2 Laboratory for Cell Biology and Signalling, Division of Molecular Biology, Ruder¯ Boškovi´cInstitute, Bijeniˇcka54, 10000 Zagreb, Croatia Abstract: Anticancer therapies mainly target primary tumor growth and little attention is given to the events driving metastasis formation. Metastatic prostate cancer, in comparison to localized disease, has a much worse prognosis. In the work presented here, groups of genes that are common to prostate cancer metastatic cells from bones, lymph nodes, and liver and those that are site-specific were delineated. The purpose of the study was to dissect potential markers and targets of anticancer therapies considering the common characteristics and differences in transcriptional programs of metastatic cells from different secondary sites. To that end, a meta-analysis of gene expression data of prostate cancer datasets from the GEO database was conducted. Genes with differential expression in all metastatic sites analyzed belong to the class of filaments, focal adhesion, and androgen receptor signaling. Bone metastases undergo the largest transcriptional changes that are highly enriched for the term of the chemokine signaling pathway, while lymph node metastasis show perturbation in signaling cascades. Liver metastases change the expression of genes in a way that is reminiscent of processes that take place in the target organ. Survival analysis for the common hub genes revealed Citation: Samaržija, I. Site-Specific involvements in prostate cancer prognosis and suggested potential biomarkers. -
Sperm Differentiation
International Journal of Molecular Sciences Review Sperm Differentiation: The Role of Trafficking of Proteins Maria E. Teves 1,* , Eduardo R. S. Roldan 2,*, Diego Krapf 3 , Jerome F. Strauss III 1 , Virali Bhagat 4 and Paulene Sapao 5 1 Department of Obstetrics and Gynecology, Virginia Commonwealth University, Richmond, VA 23298, USA; [email protected] 2 Department of Biodiversity and Evolutionary Biology, Museo Nacional de Ciencias Naturales (CSIC), 28006 Madrid, Spain 3 Department of Electrical and Computer Engineering, Colorado State University, Fort Collins, CO 80523, USA; [email protected] 4 Department of Physiology and Biophysics, Virginia Commonwealth University, Richmond, VA 23298, USA; [email protected] 5 Department of Chemistry, Virginia Commonwealth University, Richmond, VA 23298, USA; [email protected] * Correspondence: [email protected] (M.E.T.); [email protected] (E.R.S.R.) Received: 4 March 2020; Accepted: 20 May 2020; Published: 24 May 2020 Abstract: Sperm differentiation encompasses a complex sequence of morphological changes that takes place in the seminiferous epithelium. In this process, haploid round spermatids undergo substantial structural and functional alterations, resulting in highly polarized sperm. Hallmark changes during the differentiation process include the formation of new organelles, chromatin condensation and nuclear shaping, elimination of residual cytoplasm, and assembly of the sperm flagella. To achieve these transformations, spermatids have unique mechanisms for protein trafficking that operate in a coordinated fashion. Microtubules and filaments of actin are the main tracks used to facilitate the transport mechanisms, assisted by motor and non-motor proteins, for delivery of vesicular and non-vesicular cargos to specific sites.