Exploring the Role of Macroalgal Surface Metabolites on the Settlement of the Benthic Dinoflagellate Ostreopsis Cf
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University of Oklahoma
UNIVERSITY OF OKLAHOMA GRADUATE COLLEGE MACRONUTRIENTS SHAPE MICROBIAL COMMUNITIES, GENE EXPRESSION AND PROTEIN EVOLUTION A DISSERTATION SUBMITTED TO THE GRADUATE FACULTY in partial fulfillment of the requirements for the Degree of DOCTOR OF PHILOSOPHY By JOSHUA THOMAS COOPER Norman, Oklahoma 2017 MACRONUTRIENTS SHAPE MICROBIAL COMMUNITIES, GENE EXPRESSION AND PROTEIN EVOLUTION A DISSERTATION APPROVED FOR THE DEPARTMENT OF MICROBIOLOGY AND PLANT BIOLOGY BY ______________________________ Dr. Boris Wawrik, Chair ______________________________ Dr. J. Phil Gibson ______________________________ Dr. Anne K. Dunn ______________________________ Dr. John Paul Masly ______________________________ Dr. K. David Hambright ii © Copyright by JOSHUA THOMAS COOPER 2017 All Rights Reserved. iii Acknowledgments I would like to thank my two advisors Dr. Boris Wawrik and Dr. J. Phil Gibson for helping me become a better scientist and better educator. I would also like to thank my committee members Dr. Anne K. Dunn, Dr. K. David Hambright, and Dr. J.P. Masly for providing valuable inputs that lead me to carefully consider my research questions. I would also like to thank Dr. J.P. Masly for the opportunity to coauthor a book chapter on the speciation of diatoms. It is still such a privilege that you believed in me and my crazy diatom ideas to form a concise chapter in addition to learn your style of writing has been a benefit to my professional development. I’m also thankful for my first undergraduate research mentor, Dr. Miriam Steinitz-Kannan, now retired from Northern Kentucky University, who was the first to show the amazing wonders of pond scum. Who knew that studying diatoms and algae as an undergraduate would lead me all the way to a Ph.D. -
Universidade Federal Do Estado Do Rio De Janeiro
UNIVERSIDADE FEDERAL DO ESTADO DO RIO DE JANEIRO - UNIRIO CENTRO DE CIÊNCIAS BIOLÓGICAS E DA SAÚDE - CCBS INSTITUTO DE BIOCIÊNCIAS - IBio PROGRAMA DE PÓS-GRADUAÇÃO EM CIÊNCIAS BIOLÓGICAS - PPGBIO (BIODIVERSIDADE NEOTROPICAL) Erick Alves Pereira Lopes Filho Filogenia e filogeografia de espécies de Dictyota Lamouroux (Dictyotales: Phaeophyceae) Rio de Janeiro 2018 Erick Alves Pereira Lopes Filho Filogenia e filogeografia de espécies de Dictyota Lamouroux (Dictyotales: Phaeophyceae) Dissertação apresentada ao Programa de Pós-Graduação em Ciências Biológicas (Biodiversidade Neotropical) da Universidade Federal do Estado do Rio de Janeiro como requisito parcial para obtenção do título de Mestre. Orientador: Prof. Dr. Joel Campos de Paula Co-orientador: Prof. Dr. Fabiano Salgueiro Rio de Janeiro 2018 UNIVERSIDADE FEDERAL DO ESTADO DO RIO DE JANEIRO - UNIRIO CENTRO DE CIÊNCIAS BIOLÓGICAS E DA SAÚDE - CCBS INSTITUTO DE BIOCIÊNCIAS - IBio Erick Alves Pereira Lopes Filho Filogenia e filogeografia de espécies de Dictyota Lamouroux (Dictyotales: Phaeophyceae) Dissertação apresentada ao curso de Mestrado em Ciências Biológicas do Programa de Pós- Graduação em Ciências Biológicas (Biodiversidade Neotropical) da Universidade Federal do Estado do Rio de Janeiro no dia 11 de janeiro de 2018, como requisito parcial para a obtenção do título de Mestre em Ciências Biológicas. A mesma foi avaliada pela banca examinadora composta por Dr.ª Maria Beatriz Barbosa de Barros Barreto, Dr.ª Valéria Cassano e Dr. Joel Campos de Paula, sendo suplentes Dr. Fabiano Salgueiro, Dr. Leandro Pederneiras e Dr.ª Valéria Laneuville Teixeira, e aprovada com o conceito _________________ Dr.ª Maria Beatriz Barbosa de Barros Barreto Universidade Federal do Rio de Janeiro ______ Dr.ª Valéria Cassano Universidade de São Paulo Dr. -
BROWN ALGAE [147 Species] (
CHECKLIST of the SEAWEEDS OF IRELAND: BROWN ALGAE [147 species] (http://seaweed.ucg.ie/Ireland/Check-listPhIre.html) PHAEOPHYTA: PHAEOPHYCEAE ECTOCARPALES Ectocarpaceae Acinetospora Bornet Acinetospora crinita (Carmichael ex Harvey) Kornmann Dichosporangium Hauck Dichosporangium chordariae Wollny Ectocarpus Lyngbye Ectocarpus fasciculatus Harvey Ectocarpus siliculosus (Dillwyn) Lyngbye Feldmannia Hamel Feldmannia globifera (Kützing) Hamel Feldmannia simplex (P Crouan et H Crouan) Hamel Hincksia J E Gray - Formerly Giffordia; see Silva in Silva et al. (1987) Hincksia granulosa (J E Smith) P C Silva - Synonym: Giffordia granulosa (J E Smith) Hamel Hincksia hincksiae (Harvey) P C Silva - Synonym: Giffordia hincksiae (Harvey) Hamel Hincksia mitchelliae (Harvey) P C Silva - Synonym: Giffordia mitchelliae (Harvey) Hamel Hincksia ovata (Kjellman) P C Silva - Synonym: Giffordia ovata (Kjellman) Kylin - See Morton (1994, p.32) Hincksia sandriana (Zanardini) P C Silva - Synonym: Giffordia sandriana (Zanardini) Hamel - Only known from Co. Down; see Morton (1994, p.32) Hincksia secunda (Kützing) P C Silva - Synonym: Giffordia secunda (Kützing) Batters Herponema J Agardh Herponema solitarium (Sauvageau) Hamel Herponema velutinum (Greville) J Agardh Kuetzingiella Kornmann Kuetzingiella battersii (Bornet) Kornmann Kuetzingiella holmesii (Batters) Russell Laminariocolax Kylin Laminariocolax tomentosoides (Farlow) Kylin Mikrosyphar Kuckuck Mikrosyphar polysiphoniae Kuckuck Mikrosyphar porphyrae Kuckuck Phaeostroma Kuckuck Phaeostroma pustulosum Kuckuck -
Supplementary Figure 1 Multicenter Randomised Control Trial 2746 Randomised
Supplementary Figure 1 Multicenter randomised control trial 2746 randomised 947 control 910 MNP without zinc 889 MNP with zinc 223 lost to follow up 219 lost to follow up 183 lost to follow up 34 refused 29 refused 37 refused 16 died 12 died 9 died 3 excluded 4 excluded 1 excluded 671 in follow-up 646 in follow-up 659 in follow-up at 24mo of age at 24mo of age at 24mo of age Selection for Microbiome sequencing 516 paired samples unavailable 469 paired samples unavailable 497 paired samples unavailable 69 antibiotic use 63 antibiotic use 67 antibiotic use 31 outside of WLZ criteria 37 outside of WLZ criteria 34 outside of WLZ criteria 6 diarrhea last 7 days 2 diarrhea last 7 days 7 diarrhea last 7 days 39 WLZ > -1 at 24 mo 10 WLZ < -2 at 24mo 58 WLZ > -1 at 24 mo 17 WLZ < -2 at 24mo 48 WLZ > -1 at 24 mo 8 WLZ < -2 at 24mo available for selection available for selection available for selection available for selection available for selection1 available for selection1 14 selected 10 selected 15 selected 14 selected 20 selected1 7 selected1 1 Two subjects (one in the reference WLZ group and one undernourished) had, at 12 months, no diarrhea within 1 day of stool collection but reported diarrhea within 7 days prior. Length, cm kg Weight, Supplementary Figure 2. Length (left) and weight (right) z-scores of children recruited into clinical trial NCT00705445 during the first 24 months of life. Median and quantile values are shown, with medians for participants profiled in current study indicated by red (undernourished) and black (reference WLZ) lines. -
Why the –Omic Future of Apicomplexa Should Include Gregarines Julie Boisard, Isabelle Florent
Why the –omic future of Apicomplexa should include Gregarines Julie Boisard, Isabelle Florent To cite this version: Julie Boisard, Isabelle Florent. Why the –omic future of Apicomplexa should include Gregarines. Biology of the Cell, Wiley, 2020, 10.1111/boc.202000006. hal-02553206 HAL Id: hal-02553206 https://hal.archives-ouvertes.fr/hal-02553206 Submitted on 24 Apr 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Article title: Why the –omic future of Apicomplexa should include Gregarines. Names of authors: Julie BOISARD1,2 and Isabelle FLORENT1 Authors affiliations: 1. Molécules de Communication et Adaptation des Microorganismes (MCAM, UMR 7245), Département Adaptations du Vivant (AVIV), Muséum National d’Histoire Naturelle, CNRS, CP52, 57 rue Cuvier 75231 Paris Cedex 05, France. 2. Structure et instabilité des génomes (STRING UMR 7196 CNRS / INSERM U1154), Département Adaptations du vivant (AVIV), Muséum National d'Histoire Naturelle, CP 26, 57 rue Cuvier 75231 Paris Cedex 05, France. Short Title: Gregarines –omics for Apicomplexa studies -
Dictyotales, Phaeophyceae)1
ƒ. Phycol. 46, 1301-1321 (2010) © 2010 Phycological Society of America DOI: 10.1 lll/j.1529-8817.2010.00908.x SPECIES DELIMITATION, TAXONOMY, AND BIOGEOGRAPHY OF D ICTYO TA IN EUROPE (DICTYOTALES, PHAEOPHYCEAE)1 Ana Tronholn? Departamento de Biología Vegetal (Botánica) , Universidad de La Laguna, 38271 La Laguna, Canary Islands, Spain Frederique Steen, Lennert Tyberghein, Frederik Leliaert, Heroen Verbruggen Phycology Research Group and Centre for Molecular Phylogenetics and Evolution, Ghent University, Rrijgslaan 281, Building S8, 9000 Ghent, Belgium M. Antonia Ribera Signan Unitat de Botánica, Facultat de Farmacia, Universität de Barcelona, Joan XXIII s/n, 08032 Barcelona, Spain and Olivier De Clerck Phycology Research Group and Centre for Molecular Phylogenetics and Evolution, Ghent University, Rrijgslaan 281, Building S8, 9000 Ghent, Belgium Taxonomy of the brown algal genus Dictyota has a supports the by-product hypothesis of reproductive long and troubled history. Our inability to distin isolation. guish morphological plasticity from fixed diagnostic Key index words: biogeography; Dictyota; Dictyotales; traits that separate the various species has severely diversity; molecular phylogenetics; taxonomy confounded species delineation. From continental Europe, more than 60 species and intraspecific taxa Abbreviations: AIC, Akaike information criterion; have been described over the last two centuries. Bí, Bayesian inference; BIC, Bayesian information Using a molecular approach, we addressed the criterion; GTR, general time reversible; ML, diversity of the genus in European waters and made maximum likelihood necessary taxonomic changes. A densely sampled DNA data set demonstrated the presence of six evo- lutionarily significant units (ESUs): Dictyota dichotoma Species of the genus Dictyota J. V. Lamour., along (Huds.) J. V. -
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Mediterranean Marine Science Vol. 14, 2013 Seaweeds of the Greek coasts. I. Phaeophyceae TSIAMIS K. Hellenic Centre for Marine Research (HCMR), Institute of Oceanography, Anavyssos 19013, Attica, Greece PANAYOTIDIS P. Hellenic Centre for Marine Research (HCMR), Institute of Oceanography, Anavyssos 19013, Attica, Greece ECONOMOU-AMILLI A. Faculty of Biology, Department of Ecology and Taxonomy, Athens University, Panepistimiopolis 15784, Athens, Greece KATSAROS C. Faculty of Biology, Department of Botany, Athens University, Panepistimiopolis 15784, Athens, Greece https://doi.org/10.12681/mms.315 Copyright © 2013 To cite this article: TSIAMIS, K., PANAYOTIDIS, P., ECONOMOU-AMILLI, A., & KATSAROS, C. (2013). Seaweeds of the Greek coasts. I. Phaeophyceae. Mediterranean Marine Science, 14(1), 141-157. doi:https://doi.org/10.12681/mms.315 http://epublishing.ekt.gr | e-Publisher: EKT | Downloaded at 02/10/2021 09:35:40 | Research Article Mediterranean Marine Science Indexed in WoS (Web of Science, ISI Thomson) and SCOPUS The journal is available on line at http://www.medit-mar-sc.net http://dx.doi.org/10.12681/mms.315 Seaweeds of the Greek coasts. I. Phaeophyceae K. TSIAMIS1, P. PANAYOTIDIS1, A. ECONOMOU-AMILLI2 and C. KATSAROS3 1 Hellenic Centre for Marine Research, Institute of Oceanography, Anavyssos 19013, Attica, Greece 2 Faculty of Biology, Department of Ecology and Taxonomy, Athens University, Panepistimiopolis 15784, Athens, Greece 3 Faculty of Biology, Department of Botany, Athens University, Panepistimiopolis 15784, Athens, Greece Corresponding author: [email protected] Handling Editor: Athanasios Athanasiadis Received: 25 October 2012; Accepted: 4 January 2013; Published on line: 12 March 2013 Abstract An updated checklist of the brown seaweeds (Phaeophyceae) of Greece is provided, based on both literature records and new collections. -
Pediculus Order Siphonaptera Family Culicidae Phlebotomus Hypoderma
TAXONOMY Adapted from: Veterinary Parasitology (2016), Taylor MA, Coop RL & Wall RL, 4th Edition, Ed. Wiley Blackwell ARTHROPODS (Kingdom Animalia; Phylum Arthropoda) Class Insecta Order Phthiraptera Suborder Anoplura Family Pediculidae Pediculus Order Siphonaptera Order Diptera Suborder Nematocera Family Culicidae Family Psychodidae Phlebotomus Suborder Brachycera Family Oestridae Hypoderma lineatum Order Hemiptera Family Cimicidae Cimex Class Arachnida Order Astigmata Family Sarcoptidae Sarcoptes scabiei Family Psoroptidae Psoroptes Order Prostigmata Family Cheyletidae Cheyletiella Family Demodecidae Demodex Order Mesostigmata Family Varroidae Varroa destructor Order Ixodida Family Ixodidae PROTOZOA (Kingdom Protozoa) Phylum Formicata Class Metamonadea Order Giardiida Family Giardiidae Genus Giardia Phylum Ciliophora Class Litostomatea Order Trichostomatorida Family Balantidiidae Genus Balantidium Phylum Euglenozoa Class Kinetoplasta Order Trypanosomatida Family Trypanosomatidae Trypanosoma cruzi Leishmania infantum Phylum Parabasalia Class Trichomonadea Order Trichomonadida Family Trichomonadidae Trichomonas gallinae Phylum Apicomplexa Class Conoidasida Order Eucoccidiorida Family Eimeriidae Eimeria Cystoisospora Family Cryptosporidiidae Cryptosporidium parvum Family Sarcocystiidae Toxoplasma gondii Sarcocystis Neospora caninum Class Aconoidasida Order Haemosporida Family Plasmodiidae Plasmodium Order Piroplasmorida Family Babesiidae Babesia PLATYHELMINTHES (Kingdom Animalia; Phylum Platyhelminthes) Class Cestoidea Order Pseudophyllidea -
Slide 1 This Lecture Is the Second Part of the Protozoal Parasites. in This LECTURE We Will Talk About the Apicomplexans SPECIFICALLY the Coccidians
Slide 1 This lecture is the second part of the protozoal parasites. In this LECTURE we will talk about the Apicomplexans SPECIFICALLY THE Coccidians. In the next lecture we will Lecture 8: Emerging Parasitic Protozoa part 1 (Apicomplexans-1: talk about the Plasmodia and Babesia Coccidia) Presented by Sharad Malavade, MD, MPH Original Slides by Matt Tucker, PhD HSC4933 1 Emerging Infectious Diseases Slide 2 These are the readings for this week. Readings-Protozoa pt. 2 (Coccidia) • Ch.8 (p. 183 [table 8.3]) • Ch. 11 (p. 301, 304-305) 2 Slide 3 Monsters Inside Me • Cryptosporidiosis (Cryptosporidum spp., Coccidian/Apicomplexan): Background: http://www.cdc.gov/parasites/crypto/ Video: http://animal.discovery.com/videos/monsters-inside-me- cryptosporidium-outbreak.html http://animal.discovery.com/videos/monsters-inside-me-the- cryptosporidium-parasite.html Toxoplasmosis (Toxoplasma gondii, Coccidian/Apicomplexan) Background: http://www.cdc.gov/parasites/toxoplasmosis/ Video: http://animal.discovery.com/videos/monsters-inside-me- toxoplasma-parasite.html 3 Slide 4 Learning objectives: Apicomplexan These are the learning objectives for this lecture. coccidia • Define basic attributes of Apicomplexans- unique characteristics? • Know basic life cycle and developmental stages of coccidian parasites • Required hosts – Transmission strategy – Infective and diagnostic stages – Unique character of reproduction • Know the common characteristics of each parasite – Be able to contrast and compare • Define diseases, high-risk groups • Determine diagnostic methods, treatment • Know important parasite survival strategies • Be familiar with outbreaks caused by coccidians and the conditions involved 4 Slide 5 This figure from the last lecture is just to show you the Taxonomic Review apicoplexans. This lecture we talk about the Coccidians. -
Polyphyletic Origin, Intracellular Invasion, and Meiotic Genes in the Putatively Asexual Agamococcidians (Apicomplexa Incertae Sedis) Tatiana S
www.nature.com/scientificreports OPEN Polyphyletic origin, intracellular invasion, and meiotic genes in the putatively asexual agamococcidians (Apicomplexa incertae sedis) Tatiana S. Miroliubova1,2*, Timur G. Simdyanov3, Kirill V. Mikhailov4,5, Vladimir V. Aleoshin4,5, Jan Janouškovec6, Polina A. Belova3 & Gita G. Paskerova2 Agamococcidians are enigmatic and poorly studied parasites of marine invertebrates with unexplored diversity and unclear relationships to other sporozoans such as the human pathogens Plasmodium and Toxoplasma. It is believed that agamococcidians are not capable of sexual reproduction, which is essential for life cycle completion in all well studied parasitic apicomplexans. Here, we describe three new species of agamococcidians belonging to the genus Rhytidocystis. We examined their cell morphology and ultrastructure, resolved their phylogenetic position by using near-complete rRNA operon sequences, and searched for genes associated with meiosis and oocyst wall formation in two rhytidocystid transcriptomes. Phylogenetic analyses consistently recovered rhytidocystids as basal coccidiomorphs and away from the corallicolids, demonstrating that the order Agamococcidiorida Levine, 1979 is polyphyletic. Light and transmission electron microscopy revealed that the development of rhytidocystids begins inside the gut epithelial cells, a characteristic which links them specifcally with other coccidiomorphs to the exclusion of gregarines and suggests that intracellular invasion evolved early in the coccidiomorphs. We propose -
Structural and Functional Insights Into Apicomplexan Gliding and Its Regulation
Structural and functional insights into apicomplexan gliding and its regulation Dissertation to obtain the degree of Doctor of Natural Sciences University of Hamburg Faculty of Mathematics, Informatics and Natural Sciences at the Department of Biology by Samuel Pažický from Bratislava, Slovakia Hamburg 2020 Examination commission Examination commission chair Prof. Dr. Jörg Ganzhorn (University of Hamburg) Examination commission members Prof. Jonas Schmidt-Chanasit (Bernhard Nocht Institute for Tropical Medicine and University of Hamburg) Prof. Tim Gilberger (Bernhard Nocht Institute for Tropical Medicine, Centre for Structural Systems Biology and University of Hamburg) Dr. Maria Garcia-Alai (European Molecular Biology Laboratory and Centre for Structural Systems Biology) Dr. Christian Löw (European Molecular Biology Laboratory and Centre for Structural Systems Biology) Date of defence: 29.01.2021 This work was performed at European Molecular Biology Laboratory, Hamburg Unit under the supervision of Dr. Christian Löw and Prof. Tim-Wolf Gilberger. The work was supported by the Joachim Herz Foundation. Evaluation Prof. Dr. rer. nat. Tim-Wolf Gilberger Bernhard Nocht Institute for Tropical Medicine (BNITM) Department of Cellular Parasitology Hamburg Dr. Christian Löw European Molecular Biology Laboratory Hamburg unit Hamburg Prof. Dr. vet. med. Thomas Krey Hannover Medical School Institute of Virology Declaration of academic honesty I hereby declare, on oath, that I have written the present dissertation by my own and have not used other than the acknowledged resources and aids. Eidesstattliche Erklärung Hiermit erkläre ich an Eides statt, dass ich die vorliegende Dissertationsschrift selbst verfasst und keine anderen als die angegebenen Quellen und Hilfsmittel benutzt habe. Hamburg, 22.9.2020 Samuel Pažický List of contents Declaration of academic honesty 4 List of contents 5 Acknowledgements 6 Summary 7 Zusammenfassung 10 List of publications 12 Scientific contribution to the manuscript 14 Abbreviations 16 1. -
Marine Flora and Fauna of the Northeastern United States
NOAA Technical Report NMFS Circular 440 Marine Flora and Fauna of the Northeastern United States. Turbellaria: Acoela and Nemertodermatida Louise F. Bush July 1981 u.s. DEPARTMENT OF COMMERCE Malcolm Baldrige, Secretary National Oceanic and Atmospheric Administration National Marine Fisheries Service Terry L. Leitzell, Assistant Administrator for FisherIes FOREWORD This NMFS Circular is part of the subseries "Marine Flora and Fauna of the Northeastern United States;' which consists of original, illustrated, modern manuals on the identification, classification, and general biology of the estuarine and coastal marine plants and, animals of the northeastern United States. The manuals are published at irregular intervals on as many taxa of the region as there are specialists available to collaborate in their preparation. Geographic coverage of the "Marine Flora and Fauna of the Northeastern United States" is planned to include organisms from the headwaters of estuaries seaward to approximately the 200 m depth on the continental shelf from Maine to Virginia, but may vary somewhat with each major taxon and the interests of collaborators. Whenever possible representative specimens dealt with in the manuals are deposited in the reference collections of major museums of the region. The "Marine Flora and Fauna of the Northeastern United States" is being prepared in col laboration with systematic specialists in the United States and abroad. Each manual is based primarily on recent and ongoing revisionary systematic research and a fresh examination of the plants and animals, Each major taxon, treated in a separate manual, includes an introduction, illustrated glossary, uniform originally illustrated keys, annotated checklist with information \vhen available on distribution, habitat, life history, and related biology, references to the major literature of the group, and a systematic jnde:\.