Regulation of Proboscipedia in Drosophila by Homeotic Selector Genes
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Functional Analysis of the Homeobox Gene Tur-2 During Mouse Embryogenesis
Functional Analysis of The Homeobox Gene Tur-2 During Mouse Embryogenesis Shao Jun Tang A thesis submitted in conformity with the requirements for the Degree of Doctor of Philosophy Graduate Department of Molecular and Medical Genetics University of Toronto March, 1998 Copyright by Shao Jun Tang (1998) National Library Bibriothèque nationale du Canada Acquisitions and Acquisitions et Bibiiographic Services seMces bibliographiques 395 Wellington Street 395, rue Weifington OtbawaON K1AW OttawaON KYAON4 Canada Canada The author has granted a non- L'auteur a accordé une licence non exclusive licence alIowing the exclusive permettant à la National Library of Canada to Bibliothèque nationale du Canada de reproduce, loan, distri%uteor sell reproduire, prêter' distribuer ou copies of this thesis in microform, vendre des copies de cette thèse sous paper or electronic formats. la forme de microfiche/nlm, de reproduction sur papier ou sur format électronique. The author retains ownership of the L'auteur conserve la propriété du copyright in this thesis. Neither the droit d'auteur qui protège cette thèse. thesis nor substantial extracts fkom it Ni la thèse ni des extraits substantiels may be printed or otherwise de celle-ci ne doivent être imprimés reproduced without the author's ou autrement reproduits sans son permission. autorisation. Functional Analysis of The Homeobox Gene TLr-2 During Mouse Embryogenesis Doctor of Philosophy (1998) Shao Jun Tang Graduate Department of Moiecular and Medicd Genetics University of Toronto Abstract This thesis describes the clonhg of the TLx-2 homeobox gene, the determination of its developmental expression, the characterization of its fiuiction in mouse mesodem and penpheral nervous system (PNS) developrnent, the regulation of nx-2 expression in the early mouse embryo by BMP signalling, and the modulation of the function of nX-2 protein by the 14-3-3 signalling protein during neural development. -
Conservation and Diversification of Appendage Identity Specification Mechanisms Along the Anteroposterior and Proximodistal Axes in Panarthropoda Frank W
University of Connecticut OpenCommons@UConn Doctoral Dissertations University of Connecticut Graduate School 8-23-2013 Conservation and Diversification of Appendage Identity Specification Mechanisms Along the Anteroposterior and Proximodistal Axes in Panarthropoda Frank W. Smith III University of Connecticut, [email protected] Follow this and additional works at: https://opencommons.uconn.edu/dissertations Recommended Citation Smith, Frank W. III, "Conservation and Diversification of Appendage Identity Specification Mechanisms Along the Anteroposterior and Proximodistal Axes in Panarthropoda" (2013). Doctoral Dissertations. 161. https://opencommons.uconn.edu/dissertations/161 Conservation and Diversification of Appendage Identity Specification Mechanisms Along the Anteroposterior and Proximodistal Axes in Panarthropoda Frank Wesley Smith III, PhD University of Connecticut, 2013 A key characteristic of arthropods is their diverse serially homologous segmented appendages. This dissertation explores diversification of these appendages, and the developmental mechanisms producing them. In Chapter 1, the roles of genes that specify antennal identity in Drosophila melanogaster were investigated in the flour beetle Tribolium castaneum. Antenna-to-leg transformations occurred in response to RNA interference (RNAi) against homothorax, extradenticle, spineless and Distal-less. However, for homothorax/extradenticle RNAi, the extent of transformation along the proximodistal axis differed between embryogenesis and metamorphosis. This suggests that distinct mechanisms specify antennal identity during flour beetle embryogenesis and metamorphosis and leads to a model for the evolution of the Drosophila antennal identity mechanism. Homothorax/Extradenticle acquire many of their identity specification roles by acting as Hox cofactors. In chapter 2, the metamorphic roles of the Hox genes, extradenticle, and homothorax were compared in T. castaneum. homothorax/extradenticle RNAi and Hox RNAi produced similar body wall phenotypes but different appendage phenotypes. -
Function and Specificity of Synthetic Hox Transcription Factors in Vivo
Function and specificity of synthetic Hox transcription factors in vivo Dimitrios K. Papadopoulosa, Vladana Vukojevićb, Yoshitsugu Adachic, Lars Tereniusb, Rudolf Riglerd,e, and Walter J. Gehringa,1 aDepartment of Cell Biology, Biozentrum, University of Basel, 4056 Basel, Switzerland; bDepartment of Clinical Neuroscience, Karolinska Institutet, 17176 Stockholm, Sweden; cDepartment of Neuroscience, Institute of Psychiatry, King's College London, De Crespigny Park, Denmark Hill, London SE5 8AF, United Kingdom; dDepartment of Medical Biochemistry and Biophysics, Karolinska Institutet, 17177 Stockholm, Sweden; and eLaboratory of Biomedical Optics, Swiss Federal Institute of Technology, CH-1015 Lausanne, Switzerland Contributed by Walter J. Gehring, December 23, 2009 (sent for review November 3, 2009) Homeotic (Hox) genes encode transcription factors that confer Bric-à-Brac interacting protein 2 (Bip2) (17). However, Hox segmental identity along the anteroposterior axis of the embryo. cofactors do not suffice to entirely explain Hox specificity. The However the molecular mechanisms underlying Hox-mediated finding of cofactor independent Hox function (18) contributed transcription and the differential requirements for specificity in to the realization that further sequences residing in the N terminus the regulation of the vast number of Hox-target genes remain of Hox proteins might be the link for increased specificity in vivo. ill-defined. Here we show that synthetic Sex combs reduced In the present work we have derived synthetic Scr genes -
Alternative Splicing Modulates Ubx Protein Function in Drosophila Melanogaster
Copyright Ó 2010 by the Genetics Society of America DOI: 10.1534/genetics.109.112086 Alternative Splicing Modulates Ubx Protein Function in Drosophila melanogaster Hilary C. Reed,* Tim Hoare,† Stefan Thomsen,‡ Thomas A. Weaver,† Robert A. H. White,† Michael Akam* and Claudio R. Alonso‡,1 *Department of Zoology, University of Cambridge, Cambridge CB2 3EJ, United Kingdom, †Department of Physiology, Development and Neuroscience, University of Cambridge, Cambridge CB2 3DY, United Kingdom and ‡School of Life Sciences, University of Sussex, Brighton BN1 9QG, United Kingdom Manuscript received November 13, 2009 Accepted for publication December 17, 2009 ABSTRACT The Drosophila Hox gene Ultrabithorax (Ubx) produces a family of protein isoforms through alternative splicing. Isoforms differ from one another by the presence of optional segments—encoded by individual exons—that modify the distance between the homeodomain and a cofactor-interaction module termed the ‘‘YPWM’’ motif. To investigate the functional implications of Ubx alternative splicing, here we analyze the in vivo effects of the individual Ubx isoforms on the activation of a natural Ubx molecular target, the decapentaplegic (dpp) gene, within the embryonic mesoderm. These experiments show that the Ubx isoforms differ in their abilities to activate dpp in mesodermal tissues during embryogenesis. Furthermore, using a Ubx mutant that reduces the full Ubx protein repertoire to just one single isoform, we obtain specific anomalies affecting the patterning of anterior abdominal muscles, demonstrating that Ubx isoforms are not functionally interchangeable during embryonic mesoderm development. Finally, a series of experiments in vitro reveals that Ubx isoforms also vary in their capacity to bind DNA in presence of the cofactor Extradenticle (Exd). -
The Evolution and Development of Arthropod Appendages
Evolving Form and Function: Fossils and Development Proceedings of a symposium honoring Adolf Seilacher for his contributions to paleontology, in celebration of his 80th birthday Derek E. G. Briggs, Editor April 1– 2, 2005 New Haven, Connecticut A Special Publication of the Peabody Museum of Natural History Yale University New Haven, Connecticut, U.S.A. December 2005 Evolving Form and Function: Fossils and Development Proceedings of a symposium honoring Adolf Seilacher for his contributions to paleontology, in celebration of his 80th birthday A Special Publication of the Peabody Museum of Natural History, Yale University Derek E.G. Briggs, Editor These papers are the proceedings of Evolving Form and Function: Fossils and Development, a symposium held on April 1–2, 2005, at Yale University. Yale Peabody Museum Publications Jacques Gauthier, Curatorial Editor-in-Chief Lawrence F. Gall, Executive Editor Rosemary Volpe, Publications Editor Joyce Gherlone, Publications Assistant Design by Rosemary Volpe • Index by Aardvark Indexing Cover: Fossil specimen of Scyphocrinites sp., Upper Silurian, Morocco (YPM 202267). Purchased for the Yale Peabody Museum by Dr. Seilacher. Photograph by Jerry Domian. © 2005 Peabody Museum of Natural History, Yale University. All rights reserved. Frontispiece: Photograph of Dr. Adolf Seilacher by Wolfgang Gerber. Used with permission. All rights reserved. In addition to occasional Special Publications, the Yale Peabody Museum publishes the Bulletin of the Peabody Museum of Natural History, Postilla and the Yale University Publications in Anthropology. A com- plete list of titles, along with submission guidelines for contributors, can be obtained from the Yale Peabody Museum website or requested from the Publications Office at the address below. -
Evidence for a Direct Functional Antagonism of the Selector Genes Proboscipedia and Eyeless in Drosophila Head Development
Development 130, 575-586 575 © 2003 The Company of Biologists Ltd doi:10.1242/dev.00226 Evidence for a direct functional antagonism of the selector genes proboscipedia and eyeless in Drosophila head development Corinne Benassayag1, Serge Plaza2, Patrick Callaerts3, Jason Clements3, Yves Romeo4, Walter J. Gehring2 and David L. Cribbs1,* 1Centre de Biologie du Développement-CNRS and Institut d’Exploration Fonctionnelle du Génome, 118 route de Narbonne, Bâtiment 4R3, F-31062 Toulouse Cedex 04, France 2Biozentrum, University of Basel, Klingelbergstrasse 70, CH-4056 Basel, Switzerland 3Department of Biology and Biochemistry, University of Houston, 369 Science and Research Bldg. 2, Houston TX 77204-5001, USA 4IBCG-CNRS, Université Paul Sabatier, 118 route de Narbonne, F-31062 Toulouse Cedex, France *Author for correspondence (e-mail: [email protected]) Accepted 15 October 2002 SUMMARY Diversification of Drosophila segmental and cellular development. Transient co-expression is detected early identities both require the combinatorial function of after this onset, but is apparently resolved to yield exclusive homeodomain-containing transcription factors. Ectopic groups of cells expressing either PB or EY proteins. A expression of the mouthparts selector proboscipedia combination of in vivo and in vitro approaches indicates (pb) directs a homeotic antenna-to-maxillary palp that PB suppresses EY transactivation activity via protein- transformation. It also induces a dosage-sensitive eye loss protein contacts of the PB homeodomain and EY Paired that we used to screen for dominant Enhancer mutations. domain. The direct functional antagonism between PB and Four such Enhancer mutations were alleles of the eyeless EY proteins suggests a novel crosstalk mechanism (ey) gene that encode truncated EY proteins. -
HOX CLUSTER INTERGENIC SEQUENCE EVOLUTION by JEREMY DON RAINCROW a Dissertation Submitted to the Graduate School-New Brunswick R
HOX CLUSTER INTERGENIC SEQUENCE EVOLUTION By JEREMY DON RAINCROW A Dissertation submitted to the Graduate School-New Brunswick Rutgers, The State University of New Jersey and The Graduate School of Biomedical Sciences University of Medicine and Dentistry of New Jersey in partial fulfillment of the requirements for the degree of Doctor of Philosophy Graduate Program in Cell and Developmental Biology written under the direction of Chi-hua Chiu and approved by ______________________________________________ ______________________________________________ ______________________________________________ ______________________________________________ New Brunswick, New Jersey October 2010 ABSTRACT OF THE DISSERTATION HOX GENE CLUSTER INTERGENIC SEQUENCE EVOLUTION by JEREMY DON RAINCROW Dissertation Director: Chi-hua Chiu The Hox gene cluster system is highly conserved among jawed-vertebrates. Specifically, the coding region of Hox genes along with their spacing and occurrence is highly conserved throughout gnathostomes. The intergenic regions of these clusters however are more variable. During the construction of a comprehensive non-coding sequence database we discovered that the intergenic sequences appear to also be highly conserved among cartilaginous and lobe-finned fishes, but much more diverged and dynamic in the ray-finned fishes. Starting at the base of the Actinopterygii a turnover of otherwise highly conserved non-coding sequences begins. This turnover is extended well into the derived ray-finned fish clade, Teleostei. Evidence from our population genetic study suggests this turnover, which appears to be due mainly to loosened constraints at the macro-evolutionary level, is highlighted by evidence of strong positive selection acting at the micro-evolutionary level. During the construction of the non-coding sequence database we also discovered that along with evidence of both relaxed constraints and positive selection emerges a pattern of transposable elements found within the Hox gene cluster system. -
Homeotic Gene Action in Embryonic Brain Development of Drosophila
Development 125, 1579-1589 (1998) 1579 Printed in Great Britain © The Company of Biologists Limited 1998 DEV1254 Homeotic gene action in embryonic brain development of Drosophila Frank Hirth, Beate Hartmann and Heinrich Reichert* Institute of Zoology, University of Basel, Rheinsprung 9, CH-4051 Basel, Switzerland *Author for correspondence (e-mail: [email protected]) Accepted 18 February; published on WWW 1 April 1998 SUMMARY Studies in vertebrates show that homeotic genes are absence of labial, mutant cells are generated and positioned involved in axial patterning and in specifying segmental correctly in the brain, but these cells do not extend axons. identity of the embryonic hindbrain and spinal cord. To Additionally, extending axons of neighboring wild-type gain further insights into homeotic gene action during CNS neurons stop at the mutant domains or project ectopically, development, we here characterize the role of the homeotic and defective commissural and longitudinal pathways genes in embryonic brain development of Drosophila. We result. Immunocytochemical analysis demonstrates that first use neuroanatomical techniques to map the entire cells in the mutant domains do not express neuronal anteroposterior order of homeotic gene expression in the markers, indicating a complete lack of neuronal identity. Drosophila CNS, and demonstrate that this order is An alternative glial identity is not adopted by these mutant virtually identical in the CNS of Drosophila and mammals. cells. Comparable effects are seen in Deformed mutants but We then carry out a genetic analysis of the labial gene in not in other homeotic gene mutants. Our findings embryonic brain development. Our analysis shows that demonstrate that the action of the homeotic genes labial loss-of-function mutation and ubiquitous overexpression of and Deformed are required for neuronal differentiation in labial results in ectopic expression of neighboring the developing brain of Drosophila. -
Mechanisms of Specificity for Hox Factor Activity
Journal of Developmental Biology Review Mechanisms of Specificity for Hox Factor Activity Arya Zandvakili 1,2 and Brian Gebelein 3,* 1 Molecular and Developmental Biology Graduate Program, Cincinnati Children’s Hospital Medical Center, Cincinnati, OH 45229, USA 2 Medical-Scientist Training Program, University of Cincinnati College of Medicine, Cincinnati, OH 45267, USA; [email protected] 3 Division of Developmental Biology, Cincinnati Children’s Hospital Medical Center, Cincinnati, OH 45229, USA * Correspondence: [email protected]; Tel.: +1-513-636-3366 Academic Editors: Vincenzo Zappavigna and Simon J. Conway Received: 5 April 2016; Accepted: 4 May 2016; Published: 9 May 2016 Abstract: Metazoans encode clusters of paralogous Hox genes that are critical for proper development of the body plan. However, there are a number of unresolved issues regarding how paralogous Hox factors achieve specificity to control distinct cell fates. First, how do Hox paralogs, which have very similar DNA binding preferences in vitro, drive different transcriptional programs in vivo? Second, the number of potential Hox binding sites within the genome is vast compared to the number of sites bound. Hence, what determines where in the genome Hox factors bind? Third, what determines whether a Hox factor will activate or repress a specific target gene? Here, we review the current evidence that is beginning to shed light onto these questions. In particular, we highlight how cooperative interactions with other transcription factors (especially PBC and HMP proteins) and the sequences of cis-regulatory modules provide a basis for the mechanisms of Hox specificity. We conclude by integrating a number of the concepts described throughout the review in a case study of a highly interrogated Drosophila cis-regulatory module named “The Distal-less Conserved Regulatory Element” (DCRE). -
Engrailed Homeoproteins in Visual System Development
Cell. Mol. Life Sci. (2015) 72:1433–1445 DOI 10.1007/s00018-014-1776-z Cellular and Molecular Life Sciences REVIEW Engrailed homeoproteins in visual system development Andrea Wizenmann • Olivier Stettler • Kenneth L. Moya Received: 28 July 2014 / Revised: 31 October 2014 / Accepted: 6 November 2014 / Published online: 29 November 2014 Ó The Author(s) 2014. This article is published with open access at Springerlink.com Abstract Engrailed is a homeoprotein transcription Keywords Visual system Á Retina Á Tectum Á factor. This family of transcription factors is characterized Sensory map Á Homeoprotein Á Engrailed by their DNA-binding homeodomain and some members, including Engrailed, can transfer between cells and reg- ulate protein translation in addition to gene transcription. Introduction Engrailed is intimately involved in the development of the vertebrate visual system. Early expression of Engrailed in Since the discovery of homeobox genes [1, 2] there has dorsal mesencephalon contributes to the development and been accumulating evidence from all multi-cellular organization of a visual structure, the optic tectum/supe- organisms that these genes play key roles in determining rior colliculus. This structure is an important target for positional information. These genes encode homeoprotein retinal ganglion cell axons that carry visual information transcription factors that regulate the expression of down- from the retina. Engrailed regulates the expression of stream genes necessary at all developmental stages, Ephrin axon guidance cues in the tectum/superior col- including lineage determination, cell migration, cell dif- liculus. More recently it has been reported that Engrailed ferentiation, and tissue formation. Some homeoproteins are itself acts as an axon guidance cue in synergy with the also able to regulate protein translation and cell-to-cell Ephrin system and is proposed to enhance retinal topo- signaling. -
Characterisation of HPC3, a New Human Polycomb Group Protein
Characterisation of HPC3, A NEW HUMAN POLYCOMB GROUP PROTEIN Julia I. Bardos Thesis presented for the degree of Doctor of Philosophy from the University of London August 2001 Molecular Structure and Function Laboratory Imperial Cancer Research Fund 44 Lincoln’s Inn Fields London WC2A 3PX ProQuest Number: U643553 All rights reserved INFORMATION TO ALL USERS The quality of this reproduction is dependent upon the quality of the copy submitted. In the unlikely event that the author did not send a complete manuscript and there are missing pages, these will be noted. Also, if material had to be removed, a note will indicate the deletion. uest. ProQuest U643553 Published by ProQuest LLC(2016). Copyright of the Dissertation is held by the Author. All rights reserved. This work is protected against unauthorized copying under Title 17, United States Code. Microform Edition © ProQuest LLC. ProQuest LLC 789 East Eisenhower Parkway P.O. Box 1346 Ann Arbor, Ml 48106-1346 A b s t r a c t A b str a c t Polycomb Group (PcG) proteins are a conserved group of transcriptional repressors, mainly known for their role in stably maintaining the repressed state of homeotic and Hox genes, after their expression patterns have been established early in embryonic development. Thus, the Polycomb Group constitutes an important part of a cellular transcriptional memory system. Loss of PcG function leads to homeotic transformations in Drosophila and corresponding shifts in Hox gene expression in vertebrates. PcG proteins form multiprotein complexes of varying composition that associate with chromatin, and it has been postulated that they achieve gene silencing by altering higher order chromatin structure. -
Evolving Pathways Key Themes in Evolutionary Developmental Biology
Evolving Pathways Key Themes in Evolutionary Developmental Biology Evolutionary developmental biology, or ‘evo-devo’, is the study of the relationship between evolution and development. Dealing specifically with the generative mechanisms of organismal form, evo-devo goes straight to the core of the developmental origin of variation, the raw material on which natural selection (and random drift) can work. Evolving Pathways responds to the growing volume of data in this field, with its potential to answer fundamental questions in biology, by fuelling debate through contributions that represent a diversity of approaches. Topics range from developmental genetics to comparative morphology of animals and plants alike, including palaeontology. Researchers and graduate students will find this book a valuable overview of current research as we begin to fill a major gap in our perception of evolutionary change. ALESSANDRO MINELLI is currently Professor of Zoology at the University of Padova, Italy. An honorary fellow of the Royal Entomological Society, he was a founding member and Vice-President of the European Society for Evolutionary Biology. He has served as President of the International Commission on Zoological Nomenclature, and is on the editorial board of multiple learned journals, including Evolution & Development. He is the author of The Development of Animal Form (2003). GIUSEPPE FUSCO is Assistant Professor of Zoology at the University of Padova, Italy, where he teaches evolutionary biology. His main research work is in the morphological