Homeotic Gene Action in Embryonic Brain Development of Drosophila
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Functional Analysis of the Homeobox Gene Tur-2 During Mouse Embryogenesis
Functional Analysis of The Homeobox Gene Tur-2 During Mouse Embryogenesis Shao Jun Tang A thesis submitted in conformity with the requirements for the Degree of Doctor of Philosophy Graduate Department of Molecular and Medical Genetics University of Toronto March, 1998 Copyright by Shao Jun Tang (1998) National Library Bibriothèque nationale du Canada Acquisitions and Acquisitions et Bibiiographic Services seMces bibliographiques 395 Wellington Street 395, rue Weifington OtbawaON K1AW OttawaON KYAON4 Canada Canada The author has granted a non- L'auteur a accordé une licence non exclusive licence alIowing the exclusive permettant à la National Library of Canada to Bibliothèque nationale du Canada de reproduce, loan, distri%uteor sell reproduire, prêter' distribuer ou copies of this thesis in microform, vendre des copies de cette thèse sous paper or electronic formats. la forme de microfiche/nlm, de reproduction sur papier ou sur format électronique. The author retains ownership of the L'auteur conserve la propriété du copyright in this thesis. Neither the droit d'auteur qui protège cette thèse. thesis nor substantial extracts fkom it Ni la thèse ni des extraits substantiels may be printed or otherwise de celle-ci ne doivent être imprimés reproduced without the author's ou autrement reproduits sans son permission. autorisation. Functional Analysis of The Homeobox Gene TLr-2 During Mouse Embryogenesis Doctor of Philosophy (1998) Shao Jun Tang Graduate Department of Moiecular and Medicd Genetics University of Toronto Abstract This thesis describes the clonhg of the TLx-2 homeobox gene, the determination of its developmental expression, the characterization of its fiuiction in mouse mesodem and penpheral nervous system (PNS) developrnent, the regulation of nx-2 expression in the early mouse embryo by BMP signalling, and the modulation of the function of nX-2 protein by the 14-3-3 signalling protein during neural development. -
Perspectives
Copyright 0 1994 by the Genetics Society of America Perspectives Anecdotal, Historical and Critical Commentaries on Genetics Edited by James F. Crow and William F. Dove A Century of Homeosis, A Decade of Homeoboxes William McGinnis Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut 06520-8114 NE hundred years ago, while the science of genet- ing mammals, and were proposed to encode DNA- 0 ics still existed only in the yellowing reprints of a binding homeodomainsbecause of a faint resemblance recently deceased Moravian abbot, WILLIAMBATESON to mating-type transcriptional regulatory proteins of (1894) coined the term homeosis to define a class of budding yeast and an even fainter resemblance to bac- biological variations in whichone elementof a segmen- terial helix-turn-helix transcriptional regulators. tally repeated array of organismal structures is trans- The initial stream of papers was a prelude to a flood formed toward the identity of another. After the redis- concerning homeobox genes and homeodomain pro- coveryof MENDEL’Sgenetic principles, BATESONand teins, a flood that has channeled into a steady river of others (reviewed in BATESON1909) realized that some homeo-publications, fed by many tributaries. A major examples of homeosis in floral organs and animal skel- reason for the continuing flow of studies is that many etons could be attributed to variation in genes. Soon groups, working on disparate lines of research, have thereafter, as the discipline of Drosophila genetics was found themselves swept up in the currents when they born and was evolving into a formidable intellectual found that their favorite protein contained one of the force enriching many biologicalsubjects, it gradually be- many subtypes of homeodomain. -
REVIEW Cell and Molecular Biology of Notch
459 REVIEW Cell and molecular biology of Notch Ulla-Maj Fiu´za and Alfonso Martinez Arias Department of Genetics, University of Cambridge, Cambridge CB2 3EH, UK (Correspondence should be addressed to U-M Fiu´za; Email: [email protected]) Abstract Notch signalling is a cell–cell communication process, which complexity which could account for the multitude of roles it has allows the establishment of patterns of gene expression and during development and in adult organisms. In this review, we differentiation, regulates binary cell fate choice and the will describe the multiple roles of Notch and how various factors maintenance of stem cell populations. So far, the data published can regulate Notch signalling. has elucidated the main players in the Notch signalling pathway. Journal of Endocrinology (2007) 194, 459–474 However, its regulatory mechanisms are exhibiting an increasing The structure of Notch and the Notch signalling which allowed the discovery of a core set of molecules involved pathway in Notch signalling and lead to the understanding of how they organize into a signalling pathway. The Notch genes encode members of a family of receptors that In mammals, there are four Notch genes and five genes mediate short-range signalling events. A prototypical Notch encoding ligands, three Delta-like and two Jagged (Fig. 1). In gene encodes a single transmembrane receptor composed in Drosophila, there is only one Notch-encoding gene, one Delta its extracellular region of a conserved array of up to 36 and one Jagged homologue (Serrate; Maine et al. 1995, epidermal growth factor (EGF)-like repeats, involved in Lissemore & Starmer 1999). -
Subject Index
979 Subject Index Acellularity Asymmetry of embryonic starfish mesenchyme cells: KANEKO AND development of left/right asymmetry: BROWN AND OTHERS 129 WOLPERT 1 Acetylcholinesterase Avian tropomyosin/cholinesterase expression in ascidian embryo zygotes: CROWTHER AND OTHERS 953 localization of bFGF: KALCHEIM AND NEUFELD 203 Acrosome Axis reaction anterior-posterior zona receptors on guinea-pig spermatozoa: JONES AND organizer amount and axial pattern in Xenopus: WILLIAMS 41 STEWART AND GERHART 363 Actin Axogenesis effect of stretch on muscle gene expression: LOUGHNA AND Thy-1 expression in murine olfactory bulb: XUE AND OTHERS 217 OTHERS 851 Adult Axolotl rat embryo perinatnl ndu coexistence of O-2A and O-2A " progenitors: extracellular matrix in neural crest pathways: PERRIS WOLSWIJK AND OTHERS 691 AND OTHERS 533 Aggregation Axon pattern guidance of Dictyostelium discoideum: FOERSTER AND OTHERS 11 axon patterning at rat floor plate: BOVOLENTA AND Aging DODD 435 NGF receptor in rat dental tissue: BYERS AND OTHERS 461 outgrowth Agouti growth associated protein in chick visual system: cellular action of the mouse lethal yellow mutation: BARSH SCHLOSSHAUER AND OTHERS 395 AND OTHERS 683 rat Ammonia prenatal Schwann cell development: MIRSKY AND promotes cAMP accumulation in Dictyostelium: RILEY AND OTHERS 105 BARCLAY 715 regeneration AMP effects of protease inhibitors: FAWCETT AND HOUSDEN cyclic 59 ammonia promotes cAMP accumulation in Dictyostelium: RILEY AND BARCLAY 715 prenatal Schwann cell development: MIRSKY AND Back-transplantation OTHERS -
Clonal Dispersion During Neural Tube Formation 4097 of Neuromeres
Development 126, 4095-4106 (1999) 4095 Printed in Great Britain © The Company of Biologists Limited 1999 DEV2458 Successive patterns of clonal cell dispersion in relation to neuromeric subdivision in the mouse neuroepithelium Luc Mathis1,*, Johan Sieur1, Octavian Voiculescu2, Patrick Charnay2 and Jean-François Nicolas1,‡ 1Unité de Biologie moléculaire du Développement, Institut Pasteur, 25, rue du Docteur Roux, 75724 Paris Cedex 15, France 2Unité INSERM 368, Ecole Normale Supérieure, 46 rue d’Ulm, 75230 Paris Cedex 05, France *Present address: Beckman Institute (139-74), California Institute of Technology, Pasadena, CA, 91125, USA ‡Author for correspondence (e-mail: [email protected]) Accepted 5 July; published on WWW 23 August 1999 SUMMARY We made use of the laacz procedure of single-cell labelling the AP and DV axis of the neural tube. A similar sequence to visualize clones labelled before neuromere formation, in of AP cell dispersion followed by an arrest of AP cell 12.5-day mouse embryos. This allowed us to deduce two dispersion, a preferential DV cell dispersion and then by a successive phases of cell dispersion in the formation of the coherent neuroepithelial growth, is also observed in the rhombencephalon: an initial anterior-posterior (AP) cell spinal cord and mesencephalon. This demonstrates that a dispersion, followed by an asymmetrical dorsoventral (DV) similar cascade of cell events occurs in these different cell distribution during which AP cell dispersion occurs in domains of the CNS. In the prosencephalon, differences in territories smaller than one rhombomere. We conclude that spatial constraints may explain the variability in the the general arrest of AP cell dispersion precedes the onset orientation of cell clusters. -
Epigenetics of Floral Homeotic Genes in Relation to Sexual Dimorphism in the 2 Dioecious Plant Mercurialis Annua
bioRxiv preprint doi: https://doi.org/10.1101/481481; this version posted November 29, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 Epigenetics of floral homeotic genes in relation to sexual dimorphism in the 2 dioecious plant Mercurialis annua 3 4 Janardan Khadka1, Narendra Singh Yadav1†, Micha Guy1, Gideon Grafi1* and Avi Golan- 5 Goldhirsh1* 6 1French Associates Institute for Agriculture and Biotechnology of Drylands, Jacob Blaustein 7 Institutes for Desert Research, Ben-Gurion University of the Negev, Midreshet Ben Gurion 8 84990, Israel. 9 †Present address: Department of Biological Sciences, University of Lethbridge, AB T1K 10 3M4, Canada. 11 * To whom correspondence should be addressed 12 13 14 Highlights 15 Sex determination in Mercurialis annua is not related to epigenetics of floral homeotic genes 16 but appears to be modulated by an unknown gender-specific regulator(s) that affects hormonal 17 homeostasis. 18 1 bioRxiv preprint doi: https://doi.org/10.1101/481481; this version posted November 29, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 19 Abstract 20 In plants, dioecy characterizes species carrying male and female flowers on separate plants 21 and occurs in about 6% of angiosperms. To date, the molecular mechanism(s) underlying 22 sexual dimorphism is essentially unknown. The ability of gender-reversal by hormone 23 application suggests that epigenetics might play an important role in sexual dimorphism. -
Stages of Embryonic Development of the Zebrafish
DEVELOPMENTAL DYNAMICS 2032553’10 (1995) Stages of Embryonic Development of the Zebrafish CHARLES B. KIMMEL, WILLIAM W. BALLARD, SETH R. KIMMEL, BONNIE ULLMANN, AND THOMAS F. SCHILLING Institute of Neuroscience, University of Oregon, Eugene, Oregon 97403-1254 (C.B.K., S.R.K., B.U., T.F.S.); Department of Biology, Dartmouth College, Hanover, NH 03755 (W.W.B.) ABSTRACT We describe a series of stages for Segmentation Period (10-24 h) 274 development of the embryo of the zebrafish, Danio (Brachydanio) rerio. We define seven broad peri- Pharyngula Period (24-48 h) 285 ods of embryogenesis-the zygote, cleavage, blas- Hatching Period (48-72 h) 298 tula, gastrula, segmentation, pharyngula, and hatching periods. These divisions highlight the Early Larval Period 303 changing spectrum of major developmental pro- Acknowledgments 303 cesses that occur during the first 3 days after fer- tilization, and we review some of what is known Glossary 303 about morphogenesis and other significant events that occur during each of the periods. Stages sub- References 309 divide the periods. Stages are named, not num- INTRODUCTION bered as in most other series, providing for flexi- A staging series is a tool that provides accuracy in bility and continued evolution of the staging series developmental studies. This is because different em- as we learn more about development in this spe- bryos, even together within a single clutch, develop at cies. The stages, and their names, are based on slightly different rates. We have seen asynchrony ap- morphological features, generally readily identi- pearing in the development of zebrafish, Danio fied by examination of the live embryo with the (Brachydanio) rerio, embryos fertilized simultaneously dissecting stereomicroscope. -
Alternative Splicing Modulates Ubx Protein Function in Drosophila Melanogaster
Copyright Ó 2010 by the Genetics Society of America DOI: 10.1534/genetics.109.112086 Alternative Splicing Modulates Ubx Protein Function in Drosophila melanogaster Hilary C. Reed,* Tim Hoare,† Stefan Thomsen,‡ Thomas A. Weaver,† Robert A. H. White,† Michael Akam* and Claudio R. Alonso‡,1 *Department of Zoology, University of Cambridge, Cambridge CB2 3EJ, United Kingdom, †Department of Physiology, Development and Neuroscience, University of Cambridge, Cambridge CB2 3DY, United Kingdom and ‡School of Life Sciences, University of Sussex, Brighton BN1 9QG, United Kingdom Manuscript received November 13, 2009 Accepted for publication December 17, 2009 ABSTRACT The Drosophila Hox gene Ultrabithorax (Ubx) produces a family of protein isoforms through alternative splicing. Isoforms differ from one another by the presence of optional segments—encoded by individual exons—that modify the distance between the homeodomain and a cofactor-interaction module termed the ‘‘YPWM’’ motif. To investigate the functional implications of Ubx alternative splicing, here we analyze the in vivo effects of the individual Ubx isoforms on the activation of a natural Ubx molecular target, the decapentaplegic (dpp) gene, within the embryonic mesoderm. These experiments show that the Ubx isoforms differ in their abilities to activate dpp in mesodermal tissues during embryogenesis. Furthermore, using a Ubx mutant that reduces the full Ubx protein repertoire to just one single isoform, we obtain specific anomalies affecting the patterning of anterior abdominal muscles, demonstrating that Ubx isoforms are not functionally interchangeable during embryonic mesoderm development. Finally, a series of experiments in vitro reveals that Ubx isoforms also vary in their capacity to bind DNA in presence of the cofactor Extradenticle (Exd). -
Expression Patterns of Neural Genes in Euperipatoides Kanangrensis Suggest Divergent Evolution of Onychophoran and Euarthropod Neurogenesis
Expression patterns of neural genes in Euperipatoides kanangrensis suggest divergent evolution of onychophoran and euarthropod neurogenesis Bo Joakim Eriksson and Angelika Stollewerk1 School of Biological and Chemical Sciences, Queen Mary University of London, London E1 4NS, United Kingdom Edited by Thomas C. Kaufman, Indiana University, Bloomington, IN, and approved November 10, 2010 (received for review June 28, 2010) One of the controversial debates on euarthropod relationships pattern of neurogenesis that has been retained in these groups centers on the question as to whether insects, crustaceans, and and thus cannot be used to resolve euarthropod phylogeny? myriapods (Mandibulata) share a common ancestor or whether Analysis of neurogenesis in a closely related group, the Ony- myriapods group with the chelicerates (Myriochelata). The debate chophora, might shed light on this problem. Although the phy- was stimulated recently by studies in chelicerates and myriapods logenetic position of onychophorans is still debated, many that show that neural precursor groups (NPGs) segregate from the phylogenies group them with euarthropods and possibly tardi- neuroectoderm generating the nervous system, whereas in insects grades in the phylum Arthropoda; thus onychophorans share and crustaceans the nervous tissue is produced by stem cells. Do a common ancestor with euarthropods (8, 19–23). Analyses of the shared neural characters of myriapods and chelicerates repre- neurogenesis in onychophorans suggests that, similar to insects sent derived characters that support the Myriochelata grouping? and crustaceans, single neural precursors are formed in the neu- Or do they rather reflect the ancestral pattern? Analyses of neuro- roectoderm, rather than groups of cells as seen in chelicerates and genesis in a group closely related to euarthropods, the onycho- myriapods (24–26). -
Cephalic Neurulation in the Mouse Embryo Analyzed by SEM and Morphometry
THE ANATOMICAL RECORD 203:375-396 (1982) Cephalic Neurulation in the Mouse Embryo Analyzed by SEM and Morphometry ANTONE G. JACOBSON AND PATRICK P.L. TAM Department of Zoology. Uniuersity of Texas, Austin, TX 78712 (A.G.J.) and Department of Anatomy, (‘hinese University of Hong Kong, Shatin, N.T., Hong Kong IP.PL.T) ABSTRACT A detailed account of mouse neurulation is given based mostly on SEM analysis over 20 hr of development. Many observations and measure- ments were made on staged living embryos and on embryos prepared for scanning and light microscopy to help deduce what mechanisms may contribute to neural tube formation. Each lateral half of the early cephalic neural plate makes a convex bulge, opposite to the way it must fold to form a tube. Underlying mesenchyme and matrix are reported to have a role in forming these bulges. Processes that form the tube must overcome this opposed folding and the forces that produce it. Crani- al flexure begins long before tube formation. The flexure commences at the rostra1 tip of the cephalic neural plate, then the apex of the flexure migrates caudally to the mesencephalic region. Early appearance of this flexure imposes a mechanical impediment to tube closure in forebrain and midbrain regions. Tube closure begins in the cervical region exactly where the neural plate is reflected dorsally by a bend in the embryo. This bend may mechanically assist closure in this region. Cells of the mouse neural plate are reported to contain organized microfilaments and mi- crotubules, and the plate cells appear to change shape (reduce apical area and in- crease cell height) in the same manner as that suggested in embryos of some other species to contribute to neural tube formation. -
R-Cadherin Expression During Nucleus Formation in Chicken Forebrain Neuromeres
The Journal of Neuroscience, June 1995, 15(6): 4157-4172 R-Cadherin Expression during Nucleus Formation in Chicken Forebrain Neuromeres Susanne I. I. GBnzler and Christoph Redies Department of Biochemistry, Max Planck Institute for Developmental Biology, D-72072 Tiibingen, Germany The primordial neuroepithelium of the vertebrate forebrait dahl, 1924; Vaage, 1969; Kuhlenbeck, 1973; Puelleset al., 1987; consists of transverse and longitudinal morphogenetic Puelles and Rubenstein, 1993) that represent independentmor- compartments (“neuromeres”). During development, neu- phogenetic fields (Bergquist and KallCn, 1953a,b, 1954; Keyser, rons born in the ventricular zone of each neuromere mi- 1972; Puelleset al., 1987). The boundariesbetween neuromeres grate outward to the mantle zone. Here, neuroblasts grad- often coincide with primordial fiber tracts and restrict cell lin- ually accumulate and aggregate either into sheets (“lami- eage and migration. Generally, they coincide with the borders nae”) or into roundish structures (“nuclei”). As brain ar- of expressionof generegulatory proteins (reviewed in Lumsden, chitecture matures, sets of nuclei and laminae derived from 1990, 1993; Figdor and Stern, 1993; Krumlauf et al., 1993; Puel- several neuromeres become connected by fiber tracts to les and Rubenstein, 1993; Wilson et al., 1993). form functional circuits. We show by immunostaining and During development, a percentageof cells born in the prolif- in situ hybridization techniques that, in the E3-E5 chicken erative (ventricular) zone of each neuromerebecome postmitotic embryo, the cell adhesion molecule R-cadherin is ex- and migrate as neuroblastsoutward into the mantle zone (Sauer, pressed in several stripes and patches in the forebrain neu- 1935; Fujita, 1964; Morest, 1970) in two or three sustained roepithelium. -
HOX CLUSTER INTERGENIC SEQUENCE EVOLUTION by JEREMY DON RAINCROW a Dissertation Submitted to the Graduate School-New Brunswick R
HOX CLUSTER INTERGENIC SEQUENCE EVOLUTION By JEREMY DON RAINCROW A Dissertation submitted to the Graduate School-New Brunswick Rutgers, The State University of New Jersey and The Graduate School of Biomedical Sciences University of Medicine and Dentistry of New Jersey in partial fulfillment of the requirements for the degree of Doctor of Philosophy Graduate Program in Cell and Developmental Biology written under the direction of Chi-hua Chiu and approved by ______________________________________________ ______________________________________________ ______________________________________________ ______________________________________________ New Brunswick, New Jersey October 2010 ABSTRACT OF THE DISSERTATION HOX GENE CLUSTER INTERGENIC SEQUENCE EVOLUTION by JEREMY DON RAINCROW Dissertation Director: Chi-hua Chiu The Hox gene cluster system is highly conserved among jawed-vertebrates. Specifically, the coding region of Hox genes along with their spacing and occurrence is highly conserved throughout gnathostomes. The intergenic regions of these clusters however are more variable. During the construction of a comprehensive non-coding sequence database we discovered that the intergenic sequences appear to also be highly conserved among cartilaginous and lobe-finned fishes, but much more diverged and dynamic in the ray-finned fishes. Starting at the base of the Actinopterygii a turnover of otherwise highly conserved non-coding sequences begins. This turnover is extended well into the derived ray-finned fish clade, Teleostei. Evidence from our population genetic study suggests this turnover, which appears to be due mainly to loosened constraints at the macro-evolutionary level, is highlighted by evidence of strong positive selection acting at the micro-evolutionary level. During the construction of the non-coding sequence database we also discovered that along with evidence of both relaxed constraints and positive selection emerges a pattern of transposable elements found within the Hox gene cluster system.