Maximisation Principles in Evolutionary Biology
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Functional Analysis of the Homeobox Gene Tur-2 During Mouse Embryogenesis
Functional Analysis of The Homeobox Gene Tur-2 During Mouse Embryogenesis Shao Jun Tang A thesis submitted in conformity with the requirements for the Degree of Doctor of Philosophy Graduate Department of Molecular and Medical Genetics University of Toronto March, 1998 Copyright by Shao Jun Tang (1998) National Library Bibriothèque nationale du Canada Acquisitions and Acquisitions et Bibiiographic Services seMces bibliographiques 395 Wellington Street 395, rue Weifington OtbawaON K1AW OttawaON KYAON4 Canada Canada The author has granted a non- L'auteur a accordé une licence non exclusive licence alIowing the exclusive permettant à la National Library of Canada to Bibliothèque nationale du Canada de reproduce, loan, distri%uteor sell reproduire, prêter' distribuer ou copies of this thesis in microform, vendre des copies de cette thèse sous paper or electronic formats. la forme de microfiche/nlm, de reproduction sur papier ou sur format électronique. The author retains ownership of the L'auteur conserve la propriété du copyright in this thesis. Neither the droit d'auteur qui protège cette thèse. thesis nor substantial extracts fkom it Ni la thèse ni des extraits substantiels may be printed or otherwise de celle-ci ne doivent être imprimés reproduced without the author's ou autrement reproduits sans son permission. autorisation. Functional Analysis of The Homeobox Gene TLr-2 During Mouse Embryogenesis Doctor of Philosophy (1998) Shao Jun Tang Graduate Department of Moiecular and Medicd Genetics University of Toronto Abstract This thesis describes the clonhg of the TLx-2 homeobox gene, the determination of its developmental expression, the characterization of its fiuiction in mouse mesodem and penpheral nervous system (PNS) developrnent, the regulation of nx-2 expression in the early mouse embryo by BMP signalling, and the modulation of the function of nX-2 protein by the 14-3-3 signalling protein during neural development. -
FGF Signaling in Gastrulation and Neural Development in Nematostella Vectensis, an Anthozoan Cnidarian
Dev Genes Evol DOI 10.1007/s00427-006-0122-3 ORIGINAL ARTICLE FGF signaling in gastrulation and neural development in Nematostella vectensis, an anthozoan cnidarian David Q. Matus & Gerald H. Thomsen & Mark Q. Martindale Received: 8 June 2006 /Accepted: 3 November 2006 # Springer-Verlag 2007 Abstract The fibroblast growth factor (FGF) signal trans- planula stages known as the apical tuft. These results duction pathway serves as one of the key regulators of early suggest a conserved role for FGF signaling molecules in metazoan development, displaying conserved roles in the coordinating both gastrulation and neural induction that specification of endodermal, mesodermal, and neural fates predates the Cambrian explosion and the origins of the during vertebrate development. FGF signals also regulate Bilateria. gastrulation, in part, by triggering epithelial to mesenchy- mal transitions in embryos of both vertebrates and Keywords Gastrulation . Neurogenesis . invertebrates. Thus, FGF signals coordinate gastrulation Evolution of development movements across many different phyla. To help under- stand the breadth of FGF signaling deployment across the animal kingdom, we have examined the presence and Introduction expression of genes encoding FGF pathway components in the anthozoan cnidarian Nematostella vectensis. We isolat- Fibroblast growth factors (FGFs) were originally isolated ed three FGF ligands (NvFGF8A, NvFGF8B,and from vertebrate brain and pituitary fibroblasts for their roles NvFGF1A), two FGF receptors (NvFGFRa and NvFGFRb), in angiogenesis, mitogenesis, cellular differentiation, mi- and two orthologs of vertebrate FGF responsive genes, gration, and tissue-injury repair (Itoh and Ornitz 2004; Sprouty (NvSprouty), an inhibitor of FGF signaling, and Ornitz and Itoh 2001; Popovici et al. 2005). FGFs signal Churchill (NvChurchill), a Zn finger transcription factor. -
Mendelism, Plant Breeding and Experimental Cultures: Agriculture and the Development of Genetics in France Christophe Bonneuil
Mendelism, plant breeding and experimental cultures: Agriculture and the development of genetics in France Christophe Bonneuil To cite this version: Christophe Bonneuil. Mendelism, plant breeding and experimental cultures: Agriculture and the development of genetics in France. Journal of the History of Biology, Springer Verlag, 2006, vol. 39 (n° 2 (juill. 2006)), pp.281-308. hal-00175990 HAL Id: hal-00175990 https://hal.archives-ouvertes.fr/hal-00175990 Submitted on 3 Oct 2007 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Mendelism, plant breeding and experimental cultures: Agriculture and the development of genetics in France Christophe Bonneuil Centre Koyré d’Histoire des Sciences et des Techniques, CNRS, Paris and INRA-TSV 57 rue Cuvier. MNHN. 75005 Paris. France Journal of the History of Biology, vol. 39, no. 2 (juill. 2006), 281-308. This is an early version; please refer to the original publication for quotations, photos, and original pagination Abstract The article reevaluates the reception of Mendelism in France, and more generally considers the complex relationship between Mendelism and plant breeding in the first half on the twentieth century. It shows on the one side that agricultural research and higher education institutions have played a key role in the development and institutionalization of genetics in France, whereas university biologists remained reluctant to accept this approach on heredity. -
Philosophy and the Black Experience
APA NEWSLETTER ON Philosophy and the Black Experience John McClendon & George Yancy, Co-Editors Spring 2004 Volume 03, Number 2 elaborations on the sage of African American scholarship is by ROM THE DITORS way of centrally investigating the contributions of Amilcar F E Cabral to Marxist philosophical analysis of the African condition. Duran’s “Cabral, African Marxism, and the Notion of History” is a comparative look at Cabral in light of the contributions of We are most happy to announce that this issue of the APA Marxist thinkers C. L. R. James and W. E. B. Du Bois. Duran Newsletter on Philosophy and the Black Experience has several conceptually places Cabral in the role of an innovative fine articles on philosophy of race, philosophy of science (both philosopher within the Marxist tradition of Africana thought. social science and natural science), and political philosophy. Duran highlights Cabral’s profound understanding of the However, before we introduce the articles, we would like to historical development as a manifestation of revolutionary make an announcement on behalf of the Philosophy practice in the African liberation movement. Department at Morgan State University (MSU). It has come to In this issue of the Newsletter, philosopher Gertrude James our attention that MSU may lose the major in philosophy. We Gonzalez de Allen provides a very insightful review of Robert think that the role of our Historically Black Colleges and Birt’s book, The Quest for Community and Identity: Critical Universities and MSU in particular has been of critical Essays in Africana Social Philosophy. significance in attracting African American students to Our last contributor, Dr. -
Bibliography and Scientific Name Index to Amphibians
lb BIBLIOGRAPHY AND SCIENTIFIC NAME INDEX TO AMPHIBIANS AND REPTILES IN THE PUBLICATIONS OF THE BIOLOGICAL SOCIETY OF WASHINGTON BULLETIN 1-8, 1918-1988 AND PROCEEDINGS 1-100, 1882-1987 fi pp ERNEST A. LINER Houma, Louisiana SMITHSONIAN HERPETOLOGICAL INFORMATION SERVICE NO. 92 1992 SMITHSONIAN HERPETOLOGICAL INFORMATION SERVICE The SHIS series publishes and distributes translations, bibliographies, indices, and similar items judged useful to individuals interested in the biology of amphibians and reptiles, but unlikely to be published in the normal technical journals. Single copies are distributed free to interested individuals. Libraries, herpetological associations, and research laboratories are invited to exchange their publications with the Division of Amphibians and Reptiles. We wish to encourage individuals to share their bibliographies, translations, etc. with other herpetologists through the SHIS series. If you have such items please contact George Zug for instructions on preparation and submission. Contributors receive 50 free copies. Please address all requests for copies and inquiries to George Zug, Division of Amphibians and Reptiles, National Museum of Natural History, Smithsonian Institution, Washington DC 20560 USA. Please include a self-addressed mailing label with requests. INTRODUCTION The present alphabetical listing by author (s) covers all papers bearing on herpetology that have appeared in Volume 1-100, 1882-1987, of the Proceedings of the Biological Society of Washington and the four numbers of the Bulletin series concerning reference to amphibians and reptiles. From Volume 1 through 82 (in part) , the articles were issued as separates with only the volume number, page numbers and year printed on each. Articles in Volume 82 (in part) through 89 were issued with volume number, article number, page numbers and year. -
Cadherin Switch Marks Germ Layer Formation in the Diploblastic Sea Anemone Nematostella Vectensis
bioRxiv preprint doi: https://doi.org/10.1101/488270; this version posted December 6, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Cadherin switch marks germ layer formation in the diploblastic sea anemone Nematostella vectensis PUKHLYAKOVA, E.A.1, KIRILLOVA, A.1,2, KRAUS, Y.A. 2, TECHNAU, U.1 1 Department for Molecular Evolution and Development, Centre of Organismal Systems Biology, University of Vienna, Althanstraße 14, A-1090 Vienna, Austria. 2 Department of Evolutionary Biology, Biological Faculty, Moscow State University, Leninskie Gory 1/12, 119991, Moscow, Russia. Key words: cadherin, cell adhesion, morphogenesis, germ layers, Nematostella, Cnidaria Abstract Morphogenesis is a shape-building process during development of multicellular organisms. During this process the establishment and modulation of cell-cell contacts play an important role. Cadherins, the major cell adhesion molecules, form adherens junctions connecting ephithelial cells. Numerous studies in Bilateria have shown that cadherins are associated with the regulation of cell differentiation, cell shape changes, cell migration and tissue morphogenesis. To date, the role of Cadherins in non- bilaterians is unknown. Here, we study the expression and the function of two paralogous classical cadherins, cadherin1 and cadherin3, in the diploblastic animal, the sea anemone Nematostella vectensis. We show that a cadherin switch is accompanying the formation of germ layers. Using specific antibodies, we show that both cadherins are localized to adherens junctions at apical and basal positions in ectoderm and endoderm. -
1 Demographic History, Cold Adaptation, and Recent NRAP Recurrent Convergent Evolution At
bioRxiv preprint doi: https://doi.org/10.1101/2020.06.15.151894; this version posted June 15, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 Demographic history, cold adaptation, and recent NRAP recurrent convergent evolution at 2 amino acid residue 100 in the world northernmost cattle from Russia 3 4 Laura Buggiotti1, Andrey A. Yurchenko2, Nikolay S. Yudin2, Christy J. Vander Jagt3, Hans D. 5 Daetwyler3,4, Denis M. Larkin1,2,5 6 1Royal Veterinary College, University of London, London, UK. 7 2The Federal State Budgetary Institution of Science Federal Research Center Institute of Cytology 8 and Genetics, Siberian Branch of the Russian Academy of Sciences (ICG SB RAS), Novosibirsk, 9 Russia. 10 3Agriculture Victoria, AgriBio, Centre for AgriBioscience, Bundoora, 3083, Victoria, Australia. 11 4School of Applied Systems Biology, La Trobe University, Bundoora, 3083, Victoria, Australia. 12 5Kurchatov Genomics Center, the Federal Research Center Institute of Cytology and Genetics, 13 Siberian Branch of the Russian Academy of Science, Novosibirsk, Russia. 14 15 Abstract 16 Native cattle breeds represent an important cultural heritage. They are a reservoir of genetic variation 17 useful for properly responding to agriculture needs in light of ongoing climate changes. Evolutionary 18 processes that occur in response to extreme environmental conditions could also be better understood 19 using adapted local populations. Herein, different evolutionary histories for two of the world 20 northernmost native cattle breeds from Russia were investigated. They highlighted Kholmogory as a 21 typical taurine cattle, while Yakut cattle separated from European taurines ~5,000 years ago and 22 contain numerous ancestral and some novel genetic variants allowing their adaptation to harsh 23 conditions of living above the Polar Circle. -
Expert Report of Professor Woinarski
NOTICE OF FILING This document was lodged electronically in the FEDERAL COURT OF AUSTRALIA (FCA) on 18/01/2019 3:23:32 PM AEDT and has been accepted for filing under the Court’s Rules. Details of filing follow and important additional information about these are set out below. Details of Filing Document Lodged: Expert Report File Number: VID1228/2017 File Title: FRIENDS OF LEADBEATER'S POSSUM INC v VICFORESTS Registry: VICTORIA REGISTRY - FEDERAL COURT OF AUSTRALIA Dated: 18/01/2019 3:23:39 PM AEDT Registrar Important Information As required by the Court’s Rules, this Notice has been inserted as the first page of the document which has been accepted for electronic filing. It is now taken to be part of that document for the purposes of the proceeding in the Court and contains important information for all parties to that proceeding. It must be included in the document served on each of those parties. The date and time of lodgment also shown above are the date and time that the document was received by the Court. Under the Court’s Rules the date of filing of the document is the day it was lodged (if that is a business day for the Registry which accepts it and the document was received by 4.30 pm local time at that Registry) or otherwise the next working day for that Registry. No. VID 1228 of 2017 Federal Court of Australia District Registry: Victoria Division: ACLHR FRIENDS OF LEADBEATER’S POSSUM INC Applicant VICFORESTS Respondent EXPERT REPORT OF PROFESSOR JOHN CASIMIR ZICHY WOINARSKI Contents: 1. -
Atavism in the Watermelon
37° The Ohio Naturalist. [Vol. Ill, No. 4, ATAVISM IN THE WATERMELON. JOHN H. SCHAFFNER. In the summer of 1895 I noticed a peculiar variation in the leaves of a watermelon vine, growing in a patch in Clay county, Kansas. The plants were of the variety known as the " Georgia Rattlesnake," and, excepting the single plant mentioned, were of the usual type. nThe leaves of the watermelon seem to be quite constant in form. They are usually described as palmately five-lobed, the lobes being mostly sinuate-pinnatifid, with all the segments obtuse (Fig. ib). But in this plant the lobed condition of all the leaves was almost entirely absent, the border being only moderately undulate (Fig. ic). Some of the seed from this individual were planted in 1896, and the same leaf pe- culiarity was report- ed. The form has been successfully cul- t i v a t e d every year since that time, al- though it was usually planted in patches with the ordinary kind and much cross- pollination must have resulted. Whether this con- dition of entire leaves is common in the wa- termelon I do not know, but I regard it as a good example of Fig. 1. a, A young seedling of the usual form atavism, or reversion b, Leaf of visual form. to a more primitive c, I,eaf of special form. type. Such reversions -may perhaps be of frequent occurrence in the species. It is a well-known fact that the leaves of many fossil plants from the Cretaceons have entire borders, while the modern representatives of the same genera are often serrate, denticulate or lobed. -
Alternative Splicing Modulates Ubx Protein Function in Drosophila Melanogaster
Copyright Ó 2010 by the Genetics Society of America DOI: 10.1534/genetics.109.112086 Alternative Splicing Modulates Ubx Protein Function in Drosophila melanogaster Hilary C. Reed,* Tim Hoare,† Stefan Thomsen,‡ Thomas A. Weaver,† Robert A. H. White,† Michael Akam* and Claudio R. Alonso‡,1 *Department of Zoology, University of Cambridge, Cambridge CB2 3EJ, United Kingdom, †Department of Physiology, Development and Neuroscience, University of Cambridge, Cambridge CB2 3DY, United Kingdom and ‡School of Life Sciences, University of Sussex, Brighton BN1 9QG, United Kingdom Manuscript received November 13, 2009 Accepted for publication December 17, 2009 ABSTRACT The Drosophila Hox gene Ultrabithorax (Ubx) produces a family of protein isoforms through alternative splicing. Isoforms differ from one another by the presence of optional segments—encoded by individual exons—that modify the distance between the homeodomain and a cofactor-interaction module termed the ‘‘YPWM’’ motif. To investigate the functional implications of Ubx alternative splicing, here we analyze the in vivo effects of the individual Ubx isoforms on the activation of a natural Ubx molecular target, the decapentaplegic (dpp) gene, within the embryonic mesoderm. These experiments show that the Ubx isoforms differ in their abilities to activate dpp in mesodermal tissues during embryogenesis. Furthermore, using a Ubx mutant that reduces the full Ubx protein repertoire to just one single isoform, we obtain specific anomalies affecting the patterning of anterior abdominal muscles, demonstrating that Ubx isoforms are not functionally interchangeable during embryonic mesoderm development. Finally, a series of experiments in vitro reveals that Ubx isoforms also vary in their capacity to bind DNA in presence of the cofactor Extradenticle (Exd). -
A Taxonomic Framework for Typhlopid Snakes from the Caribbean and Other Regions (Reptilia, Squamata)
caribbean herpetology article A taxonomic framework for typhlopid snakes from the Caribbean and other regions (Reptilia, Squamata) S. Blair Hedges1,*, Angela B. Marion1, Kelly M. Lipp1,2, Julie Marin3,4, and Nicolas Vidal3 1Department of Biology, Pennsylvania State University, University Park, PA 16802-5301, USA. 2Current address: School of Dentistry, University of North Carolina, Chapel Hill, NC 27599-7450, USA. 3Département Systématique et Evolution, UMR 7138, C.P. 26, Muséum National d’Histoire Naturelle, 57 rue Cuvier, F-75231 Paris cedex 05, France. 4Current address: Department of Biology, Pennsylvania State University, University Park, PA 16802-5301 USA. *Corresponding author ([email protected]) Article registration: http://zoobank.org/urn:lsid:zoobank.org:pub:47191405-862B-4FB6-8A28-29AB7E25FBDD Edited by: Robert W. Henderson. Date of publication: 17 January 2014. Citation: Hedges SB, Marion AB, Lipp KM, Marin J, Vidal N. 2014. A taxonomic framework for typhlopid snakes from the Caribbean and other regions (Reptilia, Squamata). Caribbean Herpetology 49:1–61. Abstract The evolutionary history and taxonomy of worm-like snakes (scolecophidians) continues to be refined as new molec- ular data are gathered and analyzed. Here we present additional evidence on the phylogeny of these snakes, from morphological data and 489 new DNA sequences, and propose a new taxonomic framework for the family Typhlopi- dae. Of 257 named species of typhlopid snakes, 92 are now placed in molecular phylogenies along with 60 addition- al species yet to be described. Afrotyphlopinae subfam. nov. is distributed almost exclusively in sub-Saharan Africa and contains three genera: Afrotyphlops, Letheobia, and Rhinotyphlops. Asiatyphlopinae subfam. nov. is distributed in Asia, Australasia, and islands of the western and southern Pacific, and includes ten genera:Acutotyphlops, Anilios, Asiatyphlops gen. -
Bodily Complexity: Integrated Multicellular Organizations for Contraction-Based Motility
fphys-10-01268 October 11, 2019 Time: 16:13 # 1 HYPOTHESIS AND THEORY published: 15 October 2019 doi: 10.3389/fphys.2019.01268 Bodily Complexity: Integrated Multicellular Organizations for Contraction-Based Motility Argyris Arnellos1,2* and Fred Keijzer3 1 IAS-Research Centre for Life, Mind & Society, Department of Logic and Philosophy of Science, University of the Basque Country, San Sebastián, Spain, 2 Department of Product and Systems Design Engineering, Complex Systems and Service Design Lab, University of the Aegean, Syros, Greece, 3 Department of Theoretical Philosophy, University of Groningen, Groningen, Netherlands Compared to other forms of multicellularity, the animal case is unique. Animals—barring some exceptions—consist of collections of cells that are connected and integrated to such an extent that these collectives act as unitary, large free-moving entities capable of sensing macroscopic properties and events. This animal configuration Edited by: Matteo Mossio, is so well-known that it is often taken as a natural one that ‘must’ have evolved, UMR8590 Institut d’Histoire et given environmental conditions that make large free-moving units ‘obviously’ adaptive. de Philosophie des Sciences et des Techniques (IHPST), France Here we question the seemingly evolutionary inevitableness of animals and introduce Reviewed by: a thesis of bodily complexity: The multicellular organization characteristic for typical Stuart A. Newman, animals requires the integration of a multitude of intrinsic bodily features between its New York Medical