Conserved Genetic Patterning Mechanisms in Insect and Vertebrate Brain Development
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Re-Establishing the Avian Body Plan 2463
Development 126, 2461-2473 (1999) 2461 Printed in Great Britain © The Company of Biologists Limited 1999 DEV4144 Reconstitution of the organizer is both sufficient and required to re-establish a fully patterned body plan in avian embryos Shipeng Yuan and Gary C. Schoenwolf* Department of Neurobiology and Anatomy, 50 North Medical Drive, University of Utah School of Medicine, Salt Lake City, Utah 84132, USA *Author for correspondence (e-mail: [email protected]) Accepted 18 March; published on WWW 4 May 1999 SUMMARY Lateral blastoderm isolates (LBIs) at the late gastrula/early and reconstitution of the body plan fail to occur. Thus, the neurula stage (i.e., stage 3d/4) that lack Hensen’s node reconstitution of the organizer is not only sufficient to re- (organizer) and primitive streak can reconstitute a establish a fully patterned body plan, it is also required. functional organizer and primitive streak within 10-12 Finally, our results show that formation and patterning of hours in culture. We used LBIs to study the initiation and the heart is under the control of the organizer, and that regionalization of the body plan. A complete body plan such control is exerted during the early to mid-gastrula forms in each LBI by 36 hours in culture, and normal stages (i.e., stages 2-3a), prior to formation of the fully craniocaudal, dorsoventral, and mediolateral axes are re- elongated primitive streak. established. Thus, reconstitution of the organizer is sufficient to re-establish a fully patterned body plan. LBIs can be modified so that reconstitution of the organizer does Key words: Cardiac mesoderm, Chick embryos, Gastrulation, Gene not occur. -
Conservation and Diversification of Appendage Identity Specification Mechanisms Along the Anteroposterior and Proximodistal Axes in Panarthropoda Frank W
University of Connecticut OpenCommons@UConn Doctoral Dissertations University of Connecticut Graduate School 8-23-2013 Conservation and Diversification of Appendage Identity Specification Mechanisms Along the Anteroposterior and Proximodistal Axes in Panarthropoda Frank W. Smith III University of Connecticut, [email protected] Follow this and additional works at: https://opencommons.uconn.edu/dissertations Recommended Citation Smith, Frank W. III, "Conservation and Diversification of Appendage Identity Specification Mechanisms Along the Anteroposterior and Proximodistal Axes in Panarthropoda" (2013). Doctoral Dissertations. 161. https://opencommons.uconn.edu/dissertations/161 Conservation and Diversification of Appendage Identity Specification Mechanisms Along the Anteroposterior and Proximodistal Axes in Panarthropoda Frank Wesley Smith III, PhD University of Connecticut, 2013 A key characteristic of arthropods is their diverse serially homologous segmented appendages. This dissertation explores diversification of these appendages, and the developmental mechanisms producing them. In Chapter 1, the roles of genes that specify antennal identity in Drosophila melanogaster were investigated in the flour beetle Tribolium castaneum. Antenna-to-leg transformations occurred in response to RNA interference (RNAi) against homothorax, extradenticle, spineless and Distal-less. However, for homothorax/extradenticle RNAi, the extent of transformation along the proximodistal axis differed between embryogenesis and metamorphosis. This suggests that distinct mechanisms specify antennal identity during flour beetle embryogenesis and metamorphosis and leads to a model for the evolution of the Drosophila antennal identity mechanism. Homothorax/Extradenticle acquire many of their identity specification roles by acting as Hox cofactors. In chapter 2, the metamorphic roles of the Hox genes, extradenticle, and homothorax were compared in T. castaneum. homothorax/extradenticle RNAi and Hox RNAi produced similar body wall phenotypes but different appendage phenotypes. -
Core Transcriptional Regulatory Circuitries in Cancer
Oncogene (2020) 39:6633–6646 https://doi.org/10.1038/s41388-020-01459-w REVIEW ARTICLE Core transcriptional regulatory circuitries in cancer 1 1,2,3 1 2 1,4,5 Ye Chen ● Liang Xu ● Ruby Yu-Tong Lin ● Markus Müschen ● H. Phillip Koeffler Received: 14 June 2020 / Revised: 30 August 2020 / Accepted: 4 September 2020 / Published online: 17 September 2020 © The Author(s) 2020. This article is published with open access Abstract Transcription factors (TFs) coordinate the on-and-off states of gene expression typically in a combinatorial fashion. Studies from embryonic stem cells and other cell types have revealed that a clique of self-regulated core TFs control cell identity and cell state. These core TFs form interconnected feed-forward transcriptional loops to establish and reinforce the cell-type- specific gene-expression program; the ensemble of core TFs and their regulatory loops constitutes core transcriptional regulatory circuitry (CRC). Here, we summarize recent progress in computational reconstitution and biologic exploration of CRCs across various human malignancies, and consolidate the strategy and methodology for CRC discovery. We also discuss the genetic basis and therapeutic vulnerability of CRC, and highlight new frontiers and future efforts for the study of CRC in cancer. Knowledge of CRC in cancer is fundamental to understanding cancer-specific transcriptional addiction, and should provide important insight to both pathobiology and therapeutics. 1234567890();,: 1234567890();,: Introduction genes. Till now, one critical goal in biology remains to understand the composition and hierarchy of transcriptional Transcriptional regulation is one of the fundamental mole- regulatory network in each specified cell type/lineage. -
Table S1 the Four Gene Sets Derived from Gene Expression Profiles of Escs and Differentiated Cells
Table S1 The four gene sets derived from gene expression profiles of ESCs and differentiated cells Uniform High Uniform Low ES Up ES Down EntrezID GeneSymbol EntrezID GeneSymbol EntrezID GeneSymbol EntrezID GeneSymbol 269261 Rpl12 11354 Abpa 68239 Krt42 15132 Hbb-bh1 67891 Rpl4 11537 Cfd 26380 Esrrb 15126 Hba-x 55949 Eef1b2 11698 Ambn 73703 Dppa2 15111 Hand2 18148 Npm1 11730 Ang3 67374 Jam2 65255 Asb4 67427 Rps20 11731 Ang2 22702 Zfp42 17292 Mesp1 15481 Hspa8 11807 Apoa2 58865 Tdh 19737 Rgs5 100041686 LOC100041686 11814 Apoc3 26388 Ifi202b 225518 Prdm6 11983 Atpif1 11945 Atp4b 11614 Nr0b1 20378 Frzb 19241 Tmsb4x 12007 Azgp1 76815 Calcoco2 12767 Cxcr4 20116 Rps8 12044 Bcl2a1a 219132 D14Ertd668e 103889 Hoxb2 20103 Rps5 12047 Bcl2a1d 381411 Gm1967 17701 Msx1 14694 Gnb2l1 12049 Bcl2l10 20899 Stra8 23796 Aplnr 19941 Rpl26 12096 Bglap1 78625 1700061G19Rik 12627 Cfc1 12070 Ngfrap1 12097 Bglap2 21816 Tgm1 12622 Cer1 19989 Rpl7 12267 C3ar1 67405 Nts 21385 Tbx2 19896 Rpl10a 12279 C9 435337 EG435337 56720 Tdo2 20044 Rps14 12391 Cav3 545913 Zscan4d 16869 Lhx1 19175 Psmb6 12409 Cbr2 244448 Triml1 22253 Unc5c 22627 Ywhae 12477 Ctla4 69134 2200001I15Rik 14174 Fgf3 19951 Rpl32 12523 Cd84 66065 Hsd17b14 16542 Kdr 66152 1110020P15Rik 12524 Cd86 81879 Tcfcp2l1 15122 Hba-a1 66489 Rpl35 12640 Cga 17907 Mylpf 15414 Hoxb6 15519 Hsp90aa1 12642 Ch25h 26424 Nr5a2 210530 Leprel1 66483 Rpl36al 12655 Chi3l3 83560 Tex14 12338 Capn6 27370 Rps26 12796 Camp 17450 Morc1 20671 Sox17 66576 Uqcrh 12869 Cox8b 79455 Pdcl2 20613 Snai1 22154 Tubb5 12959 Cryba4 231821 Centa1 17897 -
Genetic Variability in the Italian Heavy Draught Horse from Pedigree Data and Genomic Information
Supplementary material for manuscript: Genetic variability in the Italian Heavy Draught Horse from pedigree data and genomic information. Enrico Mancin†, Michela Ablondi†, Roberto Mantovani*, Giuseppe Pigozzi, Alberto Sabbioni and Cristina Sartori ** Correspondence: [email protected] † These two Authors equally contributed to the work Supplementary Figure S1. Mares and foal of Italian Heavy Draught Horse (IHDH; courtesy of Cinzia Stoppa) Supplementary Figure S2. Number of Equivalent Generations (EqGen; above) and pedigree completeness (PC; below) over years in Italian Heavy Draught Horse population. Supplementary Table S1. Descriptive statistics of homozygosity (observed: Ho_obs; expected: Ho_exp; total: Ho_tot) in 267 genotyped individuals of Italian Heavy Draught Horse based on the number of homozygous genotypes. Parameter Mean SD Min Max Ho_obs 35,630.3 500.7 34,291 38,013 Ho_exp 35,707.8 64.0 35,010 35,740 Ho_tot 50,674.5 93.8 49,638 50,714 1 Definitions of the methods for inbreeding are in the text. Supplementary Figure S3. Values of BIC obtained by analyzing values of K from 1 to 10, corresponding on the same amount of clusters defining the proportion of ancestry in the 267 genotyped individuals. Supplementary Table S2. Estimation of genomic effective population size (Ne) traced back to 18 generations ago (Gen. ago). The linkage disequilibrium estimation, adjusted for sampling bias was also included (LD_r2), as well as the relative standard deviation (SD(LD_r2)). Gen. ago Ne LD_r2 SD(LD_r2) 1 100 0.009 0.014 2 108 0.011 0.018 3 118 0.015 0.024 4 126 0.017 0.028 5 134 0.019 0.031 6 143 0.021 0.034 7 156 0.023 0.038 9 173 0.026 0.041 11 189 0.029 0.046 14 213 0.032 0.052 18 241 0.036 0.058 Supplementary Table S3. -
Hoxb1 Controls Anteroposterior Identity of Vestibular Projection Neurons
Hoxb1 Controls Anteroposterior Identity of Vestibular Projection Neurons Yiju Chen1, Masumi Takano-Maruyama1, Bernd Fritzsch2, Gary O. Gaufo1* 1 Department of Biology, University of Texas at San Antonio, San Antonio, Texas, United States of America, 2 Department of Biology, University of Iowa, Iowa City, Iowa, United States of America Abstract The vestibular nuclear complex (VNC) consists of a collection of sensory relay nuclei that integrates and relays information essential for coordination of eye movements, balance, and posture. Spanning the majority of the hindbrain alar plate, the rhombomere (r) origin and projection pattern of the VNC have been characterized in descriptive works using neuroanatomical tracing. However, neither the molecular identity nor developmental regulation of individual nucleus of the VNC has been determined. To begin to address this issue, we found that Hoxb1 is required for the anterior-posterior (AP) identity of precursors that contribute to the lateral vestibular nucleus (LVN). Using a gene-targeted Hoxb1-GFP reporter in the mouse, we show that the LVN precursors originate exclusively from r4 and project to the spinal cord in the stereotypic pattern of the lateral vestibulospinal tract that provides input into spinal motoneurons driving extensor muscles of the limb. The r4-derived LVN precursors express the transcription factors Phox2a and Lbx1, and the glutamatergic marker Vglut2, which together defines them as dB2 neurons. Loss of Hoxb1 function does not alter the glutamatergic phenotype of dB2 neurons, but alters their stereotyped spinal cord projection. Moreover, at the expense of Phox2a, the glutamatergic determinants Lmx1b and Tlx3 were ectopically expressed by dB2 neurons. Our study suggests that the Hox genes determine the AP identity and diversity of vestibular precursors, including their output target, by coordinating the expression of neurotransmitter determinant and target selection properties along the AP axis. -
Assembly of the Cnidarian Camera-Type Eye from Vertebrate-Like Components
Assembly of the cnidarian camera-type eye from vertebrate-like components Zbynek Kozmik*†, Jana Ruzickova*‡, Kristyna Jonasova*‡, Yoshifumi Matsumoto§, Pavel Vopalensky*, Iryna Kozmikova*, Hynek Strnad*, Shoji Kawamura§, Joram Piatigorsky†¶, Vaclav Paces*, and Cestmir Vlcek*† *Institute of Molecular Genetics, Academy of Sciences of the Czech Republic, Videnska 1083, 142 20 Prague 4, Czech Republic; §Graduate School of Frontier Sciences, University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa, Chiba 277-8562, Japan; and ¶National Eye Institute, National Institutes of Health, Bethesda, MD 20892-3655 Edited by Eviatar Nevo, University of Haifa, Haifa, Israel, and approved April 11, 2008 (received for review January 14, 2008) Animal eyes are morphologically diverse. Their assembly, however, containing Tripedalia eyes have sophisticated visual optics as do always relies on the same basic principle, i.e., photoreceptors advanced bilaterian phyla (11). located in the vicinity of dark shielding pigment. Cnidaria as the In the present work, we characterize genes required for the likely sister group to the Bilateria are the earliest branching phylum assembly of camera-type eyes in Tripedalia. We show that the with a well developed visual system. Here, we show that camera- genetic building blocks typical of vertebrate eyes, namely ciliary type eyes of the cubozoan jellyfish, Tripedalia cystophora, use opsin and the melanogenic pathway, are used by the cubozoan genetic building blocks typical of vertebrate eyes, namely, a ciliary eyes. Although our findings of unsuspected parallelism are phototransduction cascade and melanogenic pathway. Our find- consistent with either an independent origin or common ances- ings indicative of parallelism provide an insight into eye evolution. try of cubozoan and vertebrate eyes, we believe the present data Combined, the available data favor the possibility that vertebrate favor the former alternative. -
Glioblastoma Stem Cells Induce Quiescence in Surrounding Neural Stem Cells Via Notch Signalling
bioRxiv preprint doi: https://doi.org/10.1101/856062; this version posted November 29, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Glioblastoma stem cells induce quiescence in surrounding neural stem cells via Notch signalling. Katerina Lawlor1, Maria Angeles Marques-Torrejon2, Gopuraja Dharmalingham3, Yasmine El-Azhar1, Michael D. Schneider1, Steven M. Pollard2§ and Tristan A. Rodríguez1§ 1National Heart and Lung Institute, Imperial College London, Hammersmith Hospital Campus, Du Cane Road, London W12 0NN, United Kingdom. 2 MRC Centre for Regenerative Medicine & Edinburgh Cancer Research UK Centre, University of Edinburgh, Edinburgh, UK. 3MRC London Institute of Medical Sciences, Institute of Clinical Sciences, Imperial College London, UK §Authors for correspondence: [email protected] and [email protected] Running title: Glioblastoma stem cell competition Keyword: Neural stem cells, quiescence, glioblastoma, Notch, cell competition 1 bioRxiv preprint doi: https://doi.org/10.1101/856062; this version posted November 29, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 Abstract 2 There is increasing evidence suggesting that adult neural stem cells (NSCs) are a cell of 3 origin of glioblastoma, the most aggressive form of malignant glioma. The earliest stages of 4 hyperplasia are not easy to explore, but likely involve a cross-talk between normal and 5 transformed NSCs. How normal cells respond to this cross-talk and if they expand or are 6 outcompeted is poorly understood. -
A Case of Junctional Neural Tube Defect Associated with a Lipoma of the Filum Terminale: a New Subtype of Junctional Neural Tube Defect?
CASE REPORT J Neurosurg Pediatr 21:601–605, 2018 A case of junctional neural tube defect associated with a lipoma of the filum terminale: a new subtype of junctional neural tube defect? Simona Mihaela Florea, MD,1 Alice Faure, MD,2 Hervé Brunel, MD,3 Nadine Girard, MD, PhD,3 and Didier Scavarda, MD1 Departments of 1Pediatric Neurosurgery, 2Pediatric Surgery, and 3Neuroradiology, Hôpital Timone Enfants, Marseille, France The embryological development of the central nervous system takes place during the neurulation process, which in- cludes primary and secondary neurulation. A new form of dysraphism, named junctional neural tube defect (JNTD), was recently reported, with only 4 cases described in the literature. The authors report a fifth case of JNTD. This 5-year-old boy, who had been operated on during his 1st month of life for a uretero-rectal fistula, was referred for evaluation of possible spinal dysraphism. He had urinary incontinence, clubfeet, and a history of delayed walking ability. MRI showed a spinal cord divided in two, with an upper segment ending at the T-11 level and a lower segment at the L5–S1 level, with a thickened filum terminale. The JNTDs represent a recently classified dysraphism caused by an error during junctional neurulation. The authors suggest that their patient should be included in this category as the fifth case reported in the literature and note that this would be the first reported case of JNTD in association with a lipomatous filum terminale. https://thejns.org/doi/abs/10.3171/2018.1.PEDS17492 KEYWORDS junctional neurulation; junctional neural tube defect; spina bifida; dysraphism; spine; congenital HE central nervous system and vertebrae are formed or lipomas of the filum terminale.16 When there are altera- during the neurulation process that occurs early in tions present in both the primary and secondary neurula- the embryonic life and is responsible for the trans- tion we can find mixed dysraphisms that present with ele- Tformation of the flat neural plate into the neural tube (NT). -
Subject Index
979 Subject Index Acellularity Asymmetry of embryonic starfish mesenchyme cells: KANEKO AND development of left/right asymmetry: BROWN AND OTHERS 129 WOLPERT 1 Acetylcholinesterase Avian tropomyosin/cholinesterase expression in ascidian embryo zygotes: CROWTHER AND OTHERS 953 localization of bFGF: KALCHEIM AND NEUFELD 203 Acrosome Axis reaction anterior-posterior zona receptors on guinea-pig spermatozoa: JONES AND organizer amount and axial pattern in Xenopus: WILLIAMS 41 STEWART AND GERHART 363 Actin Axogenesis effect of stretch on muscle gene expression: LOUGHNA AND Thy-1 expression in murine olfactory bulb: XUE AND OTHERS 217 OTHERS 851 Adult Axolotl rat embryo perinatnl ndu coexistence of O-2A and O-2A " progenitors: extracellular matrix in neural crest pathways: PERRIS WOLSWIJK AND OTHERS 691 AND OTHERS 533 Aggregation Axon pattern guidance of Dictyostelium discoideum: FOERSTER AND OTHERS 11 axon patterning at rat floor plate: BOVOLENTA AND Aging DODD 435 NGF receptor in rat dental tissue: BYERS AND OTHERS 461 outgrowth Agouti growth associated protein in chick visual system: cellular action of the mouse lethal yellow mutation: BARSH SCHLOSSHAUER AND OTHERS 395 AND OTHERS 683 rat Ammonia prenatal Schwann cell development: MIRSKY AND promotes cAMP accumulation in Dictyostelium: RILEY AND OTHERS 105 BARCLAY 715 regeneration AMP effects of protease inhibitors: FAWCETT AND HOUSDEN cyclic 59 ammonia promotes cAMP accumulation in Dictyostelium: RILEY AND BARCLAY 715 prenatal Schwann cell development: MIRSKY AND Back-transplantation OTHERS -
Late Effects of Retinoic Acid on Neural Crest and Aspects of Rhombomere Identity
Development 122, 783-793 (1996) 783 Printed in Great Britain © The Company of Biologists Limited 1996 DEV2020 Late effects of retinoic acid on neural crest and aspects of rhombomere identity Emily Gale1, Victoria Prince2, Andrew Lumsden3, Jon Clarke4, Nigel Holder1 and Malcolm Maden1 1Developmental Biology Research Centre, The Randall Institute, King’s College London, 26-29 Drury Lane, London WC2B 5RL, UK 2Department of Molecular Biology, Princeton University, Washington Road, Princeton, NJ 08544, USA 3MRC Brain Development Programme, Division of Anatomy and Cell Biology, UMDS, Guy’s Hospital, London SE1 9RT, UK 4Department of Anatomy and Developmental Biology, University College, Windeyer Building, Cleveland St., London W1P 6DB, UK SUMMARY We exposed st.10 chicks to retinoic acid (RA), both ment of the facial ganglion in addition to a mis-direction of globally, and locally to individual rhombomeres, to look at the extensions of its distal axons and a dramatic decrease its role in specification of various aspects of hindbrain in the number of contralateral vestibuloacoustic neurons derived morphology. Previous studies have looked at RA normally seen in r4. Only this r4-specific neuronal type is exposure at earlier stages, during axial specification. Stage affected in r4; the motor neuron projections seem normal 10 is the time of morphological segmentation of the in experimental animals. The specificity of this result, hindbrain and is just prior to neural crest migration. combined with the loss of Hoxb-1 expression in r4 and the Rhombomere 4 localised RA injections result in specific work by Krumlauf and co-workers showing gain of con- alterations of pathways some crest cells that normally tralateral neurons co-localised with ectopic Hoxb-1 migrate to sites of differentiation of neurogenic derivatives. -
1 Eric Davidson and Deep Time Douglas H. Erwin Department Of
Eric Davidson and Deep Time Douglas H. Erwin Department of Paleobiology, MRC-121 National Museum of Natural History Washington, DC 20013-7012 E-mail: [email protected] Abstract Eric Davidson had a deep and abiding interest in the role developmental mechanisms played in the generating evolutionary patterns documented in deep time, from the origin of the euechinoids to the processes responsible for the morphological architectures of major animal clades. Although not an evolutionary biologist, Davidson’s interests long preceded the current excitement over comparative evolutionary developmental biology. Here I discuss three aspects at the intersection between his research and evolutionary patterns in deep time: First, understanding the mechanisms of body plan formation, particularly those associated with the early diversification of major metazoan clades. Second, a critique of early claims about ancestral metazoans based on the discoveries of highly conserved genes across bilaterian animals. Third, Davidson’s own involvement in paleontology through a collaborative study of the fossil embryos from the Ediacaran Doushantuo Formation in south China. Keywords Eric Davidson – Evolution – Gene regulatory networks – Bodyplan – Cambrian Radiation – Echinoderms 1 Introduction Eric Davidson was a developmental biologist, not an evolutionary biologist or paleobiologist. He was driven to understand the mechanisms of gene regulatory control and how they controlled development, but this focus was deeply embedded within concerns about the relationship between development and evolution. Questions about the origin of major metazoan architectures or body plans were central to Eric’s concerns since at least the late 1960s. His 1971 paper with Roy Britten includes a section on “The Evolutionary Growth of the Genome” illustrated with a figure depicting variations in genome size in major animal groups and a metazoan phylogeny (Britten and Davidson 1971).