Uniting Micro- with Macroevolution Into an Extended Synthesis: Reintegrating Life’S Natural History Into Evolution Studies
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Framing Major Prebiotic Transitions As Stages of Protocell Development: Three Challenges for Origins-Of-Life Research
Framing major prebiotic transitions as stages of protocell development: three challenges for origins-of-life research Ben Shirt-Ediss1, Sara Murillo-Sánchez2,3 and Kepa Ruiz-Mirazo*2,3 Commentary Open Access Address: Beilstein J. Org. Chem. 2017, 13, 1388–1395. 1Interdisciplinary Computing and Complex BioSystems Group, doi:10.3762/bjoc.13.135 University of Newcastle, UK, 2Dept. Logic and Philosophy of Science, University of the Basque Country, Spain and 3Biofisika Institute Received: 16 February 2017 (CSIC, UPV-EHU), Spain Accepted: 27 June 2017 Published: 13 July 2017 Email: Kepa Ruiz-Mirazo* - [email protected] This article is part of the Thematic Series "From prebiotic chemistry to molecular evolution". * Corresponding author Guest Editor: L. Cronin Keywords: functional integration; origins of life; prebiotic evolution; protocells © 2017 Shirt-Ediss et al.; licensee Beilstein-Institut. License and terms: see end of document. Abstract Conceiving the process of biogenesis as the evolutionary development of highly dynamic and integrated protocell populations provides the most appropriate framework to address the difficult problem of how prebiotic chemistry bridged the gap to full-fledged living organisms on the early Earth. In this contribution we briefly discuss the implications of taking dynamic, functionally inte- grated protocell systems (rather than complex reaction networks in bulk solution, sets of artificially evolvable replicating molecules, or even these same replicating molecules encapsulated in passive compartments) -
Introduction to Macroevolution
Spring, 2012 Phylogenetics 200A Modes of Macroevolution Macroevolution is used to refer to any evolutionary change at or above the level of species. Darwin illustrated the combined action of descent with modification, the principle of divergence, and extinction in the only figure in On the Origin of Species (Fig. 1), showing the link between microevolution and macroevolution. The New Synthesis sought to distance itself from the ‘origin of species’ (= macroevolution) and concentrated instead on microevolution - variation within populations and reproductive isolation. “Darwin’s principle of divergence derives from what he thought to be one of the most potent components of the struggle for existence. He argued that the strongest interactions would be among individuals within a population or among closely related populations or species, because these organisms have the most similar requirements. Darwin’s principle of divergence predicts that the individuals, populations or species most likely to succeed in the struggle are those that differ most from their close relatives in the way they achieve their needs for survival and reproduction.” (Reznick & Ricklefs 2009. Nature 457) Macroevolution also fell into disfavor with its invocation for hopeful monsters in development as well as its implication in some Neo-Lamarckian theories. Interest in macroevolution revived by several paleontologists including Steven Stanley, Stephen Jay Gould and Niles Eldredge, the latter two in the context of punctuated equilibrium. They proposed that what happens in evolution beyond the species level is due to processes that operate beyond the level of populations – including species selection. Niles Eldredge, in particular, has written extensively on the macroevolutionary hierarchy. -
Comparative Evolution: Latent Potentials for Anagenetic Advance (Adaptive Shifts/Constraints/Anagenesis) G
Proc. Natl. Acad. Sci. USA Vol. 85, pp. 5141-5145, July 1988 Evolution Comparative evolution: Latent potentials for anagenetic advance (adaptive shifts/constraints/anagenesis) G. LEDYARD STEBBINS* AND DANIEL L. HARTLtt *Department of Genetics, University of California, Davis, CA 95616; and tDepartment of Genetics, Washington University School of Medicine, Box 8031, 660 South Euclid Avenue, Saint Louis, MO 63110 Contributed by G. Ledyard Stebbins, April 4, 1988 ABSTRACT One of the principles that has emerged from genetic variation available for evolutionary changes (2), a experimental evolutionary studies of microorganisms is that major concern of modem evolutionists is explaining how the polymorphic alleles or new mutations can sometimes possess a vast amount of genetic variation that actually exists can be latent potential to respond to selection in different environ- maintained. Given the fact that in complex higher organisms ments, although the alleles may be functionally equivalent or most new mutations with visible effects on phenotype are disfavored under typical conditions. We suggest that such deleterious, many biologists, particularly Kimura (3), have responses to selection in microorganisms serve as experimental sought to solve the problem by proposing that much genetic models of evolutionary advances that occur over much longer variation is selectively neutral or nearly so, at least at the periods of time in higher organisms. We propose as a general molecular level. Amidst a background of what may be largely evolutionary principle that anagenic advances often come from neutral or nearly neutral genetic variation, adaptive evolution capitalizing on preexisting latent selection potentials in the nevertheless occurs. While much of natural selection at the presence of novel ecological opportunity. -
Microevolution and the Genetics of Populations Microevolution Refers to Varieties Within a Given Type
Chapter 8: Evolution Lesson 8.3: Microevolution and the Genetics of Populations Microevolution refers to varieties within a given type. Change happens within a group, but the descendant is clearly of the same type as the ancestor. This might better be called variation, or adaptation, but the changes are "horizontal" in effect, not "vertical." Such changes might be accomplished by "natural selection," in which a trait within the present variety is selected as the best for a given set of conditions, or accomplished by "artificial selection," such as when dog breeders produce a new breed of dog. Lesson Objectives ● Distinguish what is microevolution and how it affects changes in populations. ● Define gene pool, and explain how to calculate allele frequencies. ● State the Hardy-Weinberg theorem ● Identify the five forces of evolution. Vocabulary ● adaptive radiation ● gene pool ● migration ● allele frequency ● genetic drift ● mutation ● artificial selection ● Hardy-Weinberg theorem ● natural selection ● directional selection ● macroevolution ● population genetics ● disruptive selection ● microevolution ● stabilizing selection ● gene flow Introduction Darwin knew that heritable variations are needed for evolution to occur. However, he knew nothing about Mendel’s laws of genetics. Mendel’s laws were rediscovered in the early 1900s. Only then could scientists fully understand the process of evolution. Microevolution is how individual traits within a population change over time. In order for a population to change, some things must be assumed to be true. In other words, there must be some sort of process happening that causes microevolution. The five ways alleles within a population change over time are natural selection, migration (gene flow), mating, mutations, or genetic drift. -
Chapter 9. NATURAL SELECTION and BIOLOGICAL EVOLUTION
Chapter 9. NATURAL SELECTION AND BIOLOGICAL EVOLUTION Which beginning of time [the Creation] according to our Chronologie, fell upon the entrance of the night preced- ing the twenty third day of Octob. in the year of the Julian Calendar, 710 [i.e. B.C. 4004]. Archbishop James Ussher (1581—1656) The Annals of the World1 (1658:1) “How stupid not to have thought of that!” Thomas Huxley (1825-1895), about Darwin’s theory of Evolution by Nat- ural Selection. I. Introduction A. Classical Discoveries of Biology From the mid 18th Century to the early part of the 20th, a large fraction of biologists’ efforts went into two massive collective discoveries, the discovery of biotic diversity, and the discovery of evolution. Over the period from 1750 to 1950 the careful descriptive analyses of Swedish biol- ogist Karl von Linné and his followers showed there to be on the order of 10 million or so different types of living organisms. The differences in biotas in different parts of the world came to be appreciated, the amazing diversity of the tropics was documented, and previ- ously unimagined major groups of organisms were discovered, including microorganisms and the biota of odd habitats like the oceanic plankton. The sometimes bizarre and always impressive adaptation of organisms to their habitats and ways of life greatly impressed the early scientific naturalists, who argued that it proved the existence of an All Seeing Design- er. Similarly, paleontologists described a huge variety of fossil plants and animals. The succession of forms, and the presence of many detailed structural similarities between liv- ing and extinct forms, as well as structural parallels between living forms, strongly suggest- ed that living and ancient forms of life were connected by branching lines of descent. -
What Is Macroevolution?
[Palaeontology, 2020, pp. 1–11] FRONTIERS IN PALAEONTOLOGY WHAT IS MACROEVOLUTION? by MICHAEL HAUTMANN Pal€aontologisches Institut und Museum, Universit€at Zurich,€ Karl-Schmid Strasse 4, 8006 Zurich,€ Switzerland; [email protected] Typescript received 14 June 2019; accepted in revised form 15 October 2019 Abstract: Definitions of macroevolution fall into three cat- intraspecific competition as a mediator between selective egories: (1) evolution of taxa of supraspecific rank; (2) evolu- agents and evolutionary responses. This mediating role of tion on the grand time-scale; and (3) evolution that is guided intraspecific competition occurs in the presence of sexual by sorting of interspecific variation (as opposed to sorting of reproduction and has therefore no analogue at the macroevo- intraspecific variation in microevolution). Here, it is argued lutionary level where species are the evolutionary units. Com- that only definition 3 allows for a consistent separation of petition between species manifests both on the macroevolution and microevolution. Using this definition, spe- microevolutionary and macroevolutionary level, but with dif- ciation has both microevolutionary and macroevolutionary ferent effects. In microevolution, interspecific competition aspects: the process of morphological transformation is spurs evolutionary divergence, whereas it is a potential driver microevolutionary, but the variation among species that it pro- of extinction at the macroevolutionary level. Recasting the Red duces is macroevolutionary, as is the rate at which speciation Queen hypothesis in a macroevolutionary framework suggests occurs. Selective agents may have differential effects on that the effects of interspecific competition result in a positive intraspecific and interspecific variation, with three possible sit- correlation between origination and extinction rates, confirm- uations: effect at one level only, effect at both levels with the ing empirical observations herein referred to as Stanley’s rule. -
•How Does Microevolution Add up to Macroevolution? •What Are Species
Microevolution and Macroevolution • How does Microevolution add up to macroevolution? • What are species? • How are species created? • What are anagenesis and cladogenesis? 1 Sunday, March 6, 2011 Species Concepts • Biological species concept: Defines species as interbreeding populations reproductively isolated from other such populations. • Evolutionary species concept: Defines species as evolutionary lineages with their own unique identity. • Ecological species concept: Defines species based on the uniqueness of their ecological niche. • Recognition species concept: Defines species based on unique traits or behaviors that allow members of one species to identify each other for mating. 2 Sunday, March 6, 2011 Reproductive Isolating Mechanisms • Premating RIMs Habitat isolation Temporal isolation Behavioral isolation Mechanical incompatibility • Postmating RIMs Sperm-egg incompatibility Zygote inviability Embryonic or fetal inviability 3 Sunday, March 6, 2011 Modes of Evolutionary Change 4 Sunday, March 6, 2011 Cladogenesis 5 Sunday, March 6, 2011 6 Sunday, March 6, 2011 7 Sunday, March 6, 2011 Evolution is “the simple way by which species (populations) become exquisitely adapted to various ends” 8 Sunday, March 6, 2011 All characteristics are due to the four forces • Mutation creates new alleles - new variation • Genetic drift moves these around by chance • Gene flow moves these from one population to the next creating clines • Natural selection increases and decreases them in frequency through adaptation 9 Sunday, March 6, 2011 Clines -
Hermann J. Muller's 1936 Letter to Stalin
The Mankind Quarterly 43 (3), Spring 2003, pp. 305-319 Hermann J. Muller’s 1936 Letter to Stalin John Glad1 University of Maryland This is the full text of a 1936 letter sent by the American geneticist H.J. Muller to Joseph Stalin advocating the creation of a eugenic program in the USSR. It was rejected by Stalin in favor of Lysenkoism. Key words: eugenics, communism, Lysenkoist theory, liberal roots of eugenics movement, Jewish scholars, Hermann J. Muller, Joseph Stalin, Stalinist, purges. Hermann Joseph Muller (1890-1967) received the Nobel Prize in 1946 for his work on the genetics of drosophila, whose brief generational life made it an ideal laboratory in miniature. Within a decade, however, following the discovery in 1953 of the double helical structure of DNA, drosophila studies began to be regarded as classical genetics and gave way to microbial and molecular genetics devoted to gene structure and function. Muller looked upon his drosophila research as science to be applied to the genetic betterment of the human species. A popular misconception with regard to eugenics is that it was exclusively a product of political conservatism. In point of fact the movement had its roots in the left as much as in the right. Muller himself was a devoted communist and an idealistic believer in human rights. Bearing in mind that Jewish scholars played a significant role in the eugenics movement, it should not come as a surprise to find that Muller was Jewish on his mother’s side. Indeed, he wrote a letter to Stalin on the subject of eugenics at the suggestion of the Russian-Jewish physician Solomon Levit, whose main interests lay in the field of genetics, especially in twin studies. -
Reproduction of a Protocell by Replication of Minority Molecule in Catalytic Reaction Network
APS/123-QED Reproduction of a Protocell by Replication of Minority Molecule in Catalytic Reaction Network Atsushi Kamimura1 and Kunihiko Kaneko2, 3 1Department of Applied Physics, Graduate School of Engineering, The University of Tokyo, 7-3-1, Hongo, Bunkyo-ku, Tokyo 113-8656, Japan. 2Department of Basic Science, Graduate School of Arts and Sciences, The University of Tokyo, 3-8-1, Komaba, Meguro-ku, Tokyo 153-8902, Japan 3Complex Systems Biology Project, ERATO, JST, Tokyo, Japan. (Dated: October 31, 2018) Abstract For understanding the origin of life, it is essential to explain the development of a compartmen- talized structure, which undergoes growth and division, from a set of chemical reactions. In this study, a hypercycle with two chemicals that mutually catalyze each other is considered in order to show that the reproduction of a protocell with a growth-division process naturally occurs when the replication speed of one chemical is considerably slower than that of the other chemical. It is observed that the protocell divides after a minority molecule is replicated at a slow synthesis rate, and thus, a synchrony between the reproduction of a cell and molecule replication is achieved. The robustness of such protocells against the invasion of parasitic molecules is also demonstrated. arXiv:1005.1142v1 [q-bio.CB] 7 May 2010 PACS numbers: 87.17.-d, 05.40.-a, 82.39.-k 1 Filling a gap between just a set of catalytic reactions and a reproducing cell is a difficult problem; however, it is essential to fully understand this relationship to unveil the origin of life, to establish a theory for a living state, and to experimentally synthesize protocells[1]. -
Perspectives
Copyright Ó 2007 by the Genetics Society of America Perspectives Anecdotal, Historical and Critical Commentaries on Genetics Edited by James F. Crow and William F. Dove Guido Pontecorvo (‘‘Ponte’’): A Centenary Memoir Bernard L. Cohen1 *Institute of Biomedical and Life Sciences, Division of Molecular Genetics, University of Glasgow, Glasgow G11 6NU, Scotland N a memoir published soon after Guido Pontecor- mendation, Pontecorvo applied for and was awarded a I vo’s death (Cohen 2000), I outlined his attractive, small, short-term SPSL scholarship. Thus, he could again but sometimes irascible, character, his history as a apply a genetical approach to a problem related to refugee from Fascism, and his most significant contribu- animal breeding (Pontecorvo 1940a), the branch of tions to genetics. The centenary of his birth (November agriculture in which he had most recently specialized 29, 1907) provides an opportunity for further reflec- with a series of data-rich articles (e.g.,Pontecorvo 1937). tions—personal, historical, and genetical.2 But Ponte was stranded in Edinburgh by the outbreak of Two points of interest arise from the support that war and the cancellation of a Peruvian contract and Ponte received from the Society for the Protection of continued for about 2 years to be supported by SPSL. Science and Learning (SPSL). Formed in 1933 as the The first point of interest is a prime example of the Academic Assistance Council, SPSL aimed to assist the power of chance and opportunity. Renting a small room refugees who had started to arrive in Britain from the in the IAG guest house, Ponte there met Hermann European continent (among them Max Born, Ernst Joseph Muller, who had recently arrived from Russia. -
Macroevolution Spring 2002 Reading List and Syllabus I. Introduction
Biology 4182 - Macroevolution Spring 2002 Reading List and Syllabus I. Introduction - Darwinism and Macroevolution 1. Mayr, E. 1982. The Growth of Biological Thought. Harvard Univ. Press. (Pp. 21-78) 2. Mayr, E. 1985. Darwin's five theories of evolution. Pp. 755- 772 in D. Kohn (ed.) The Darwinian Heritage. Princeton Univ. Press, Princeton. 3. Gould, S. J. 1995. Tempo and mode in the macroevolutionary reconstruction of Darwinism. Pp. 125-144 in W. M. Fitch and F. J. Ayala (eds.) Tempo and Mode in Evolution: Genetics and Paleontology 50 Years after Simpson. National Academy Press, Washington. (Pp. 125-134) 4. Simpson, G. G. 1944. Tempo and Mode in Evolution. Columbia Univ. Press, New York. (Pp. 197-217) II. Systematics I - Concepts of the Higher Taxa A. Evolutionary Taxonomy 5. Simpson, G. G. 1953. The Major Features of Evolution. Columbia Univ. Press, New York. (Pp. 199-212; 338-359) 6. Mayr, E. 1982. The Growth of Biological Thought. Harvard Univ. Press, Cambridge. (Pp. 614-616; 233-235) 7. Miller, A. H. 1949. Some ecologic and morphologic considerations in the evolution of higher taxonomic categories. Pp. 84-88 in E. Mayr and E. Schuz (eds.) Ornithologie als Biologische Wissenschaft. Carl Winter/Universitätsverlag, Heidelberg. B. Phenetic Taxonomy 8. Sneath, P. H. A. and R. R. Sokal. 1973. Numerical Taxonomy. W. H. Freeman and Co., San Francisco. (Pp. 5, 9-10, 27-30, 37- 40, 55-67). C. Cladistic Taxonomy 9. de Queiroz, K. 1988. Systematics and the Darwinian Revolution. Philosophy of Science 55:238-259. 10. Eldredge, N. and J. Cracraft. 1980. Phylogenetic Patterns and the Evolutionary Process. -
September: Forskarnas Älsklingsdjur
Forskarnas älsklingsdjur Slå inte ihjäl den irriterande bananflugan nästa gång den lilla, 2-3 mm långa bumlingen surrar runt i köket. Den är ett under- verk när det gäller iakttagelseförmåga och flygprecision. Förundras i Karl von Frisch Konrad Lorenz Nikolaas Tinbergen stället över denna lilla fluga som lärt forskarna så mycket! Nobelpriset i fysiologi eller medicin 1973 tilldelades gemensamt Bananflugan Drosophila( melanogaster) är en favorit för forskare. Karl von Frisch, Konrad Lorenz och Nikolaas Tinbergen ”för deras Redan i början av 1900-talet började man studera bananflugor upptäckter rörande organisation och utlösning av individuella eftersom de är lätta att odla och förökar sig snabbt med en ge- och sociala beteendemönster”. Frisch och Tinbergen studerade insekter, dock inte bananflugor. Läs mer på www.nobelprize.org nerationstid på endast cirka två veckor. Många genetiska varian- Bananfluga (Wikimedia Commons) ter med exempelvis olika ögon- och kroppsfärg har bildats på na- turlig väg eller framkallats med röntgenstålning eller kemikalier. Nobelpristagare som arbetat med bananflugor (se www.nobel- prize.org, Education): Beteendestudier med bananflugor • Thomas Hunt Morgan (1933) beskrev kromosomernas be- Vilda bananflugor massförökas ofta inomhus tydelse för hur egenskaper ärvs. på sensommaren om övermogen frukt får ligga • Hermann Joseph Muller (1946) upptäckte att röntgenstrål- framme. Fånga in dem i en burk med en tuss ning ger mutationer. bomull indränkt med vinäger. Se även www. • Edward B. Lewis, Christiane Nüsslein-Volhard och Eric F. bioresurs.uu.se (Inköp/Levande organismer) för Wieschaus (1995) studerade embryonalutveckling. adresser till företag som säljer bananflugor. Odlingsrör med bananflugor och parande bananflugor Klassiska skollaborationer är korsningsförsök med bananflugor Bygg en testkammare av två stora petflaskor.