Evolution, Development, and the Units of Selection (Epigenesis/Modern Synthesis/Preformation/Somatic Embryogenesis/Weismann's Doctrine) LEO W
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The Evolution of Cooperation a White Paper Prepared for the John Templeton Foundation
The evolution of cooperation A white paper prepared for the John Templeton foundation Contents Introduction - Darwin’s theory of design - The puzzle of cooperation - This review Cooperation across the tree of life - What is cooperation? - Explanations for Cooperation - The success of inclusive fitness - The debate over inclusive fitness - Alternative ways to measure cooperation - Cooperation between species - The social amoeba: the perfect test case for cooperation Cooperation in Humans - What’s special about humans? - Explanations for cooperation in humans - Cooperative games - Inter-personal and cross-cultural differences in cooperation - Psychological systems designed for cooperation - The origins of cooperation in humans - The How: The mechanism of cooperation Conclusion - The puzzle of cooperation revisited - Open questions in cooperation research 1 Introduction You probably take cooperation for granted. You’d be excused for doing so – cooperation is all around us. Children team up to complete a project on time. Neighbours help each other mend fences. Colleagues share ideas and resources. The very fabric of our society is cooperative. We divide up tasks, with farmers producing food, policemen upholding laws, teachers teaching, so that we may all share the benefits of a functioning society without any one person having to master all domains. What’s more, cooperation is logical, at least to you and me. Two hands are better than one, as the saying goes. If you want something another person has, it makes sense that you might share something of your own. Division of labour efficient. If you have a reputation as a cooperative person, others will likely help you down the line. Cooperation is a straightforward way to achieve more than you ever could on your own. -
Framing Major Prebiotic Transitions As Stages of Protocell Development: Three Challenges for Origins-Of-Life Research
Framing major prebiotic transitions as stages of protocell development: three challenges for origins-of-life research Ben Shirt-Ediss1, Sara Murillo-Sánchez2,3 and Kepa Ruiz-Mirazo*2,3 Commentary Open Access Address: Beilstein J. Org. Chem. 2017, 13, 1388–1395. 1Interdisciplinary Computing and Complex BioSystems Group, doi:10.3762/bjoc.13.135 University of Newcastle, UK, 2Dept. Logic and Philosophy of Science, University of the Basque Country, Spain and 3Biofisika Institute Received: 16 February 2017 (CSIC, UPV-EHU), Spain Accepted: 27 June 2017 Published: 13 July 2017 Email: Kepa Ruiz-Mirazo* - [email protected] This article is part of the Thematic Series "From prebiotic chemistry to molecular evolution". * Corresponding author Guest Editor: L. Cronin Keywords: functional integration; origins of life; prebiotic evolution; protocells © 2017 Shirt-Ediss et al.; licensee Beilstein-Institut. License and terms: see end of document. Abstract Conceiving the process of biogenesis as the evolutionary development of highly dynamic and integrated protocell populations provides the most appropriate framework to address the difficult problem of how prebiotic chemistry bridged the gap to full-fledged living organisms on the early Earth. In this contribution we briefly discuss the implications of taking dynamic, functionally inte- grated protocell systems (rather than complex reaction networks in bulk solution, sets of artificially evolvable replicating molecules, or even these same replicating molecules encapsulated in passive compartments) -
How the Evolution of Multicellularity Set the Stage for Cancer’
www.nature.com/bjc CORRESPONDENCE Comment on ‘How the evolution of multicellularity set the stage for cancer’ British Journal of Cancer (2018) 119:133–134; https://doi.org/ multicellular and multicellular evolutionary origins rather than 10.1038/s41416-018-0091-0 pure unicellular evolutionary origin. Ceaseless proliferation is the most characteristic feature of cancer. But, this behaviour is rarely adopted by unicellular organisms in nature. In addition to cell communication, cell-to- We read the paper “How the evolution of multicellularity set the substrate and cell-to-cell adhesions, earlier unicellular organisms stage for cancer” with interest, which was published in a recent (prokaryotes and protists) acquired a variety of anti-proliferative issue of the British Journal of Cancer.1 In this paper, the authors capabilities (cell cycle negative regulation, programmed cell underlined that disruption of gene regulatory networks, which death, contact-dependent inhibition, toxin-antitoxin, etc.) through maintain the multicellular state, induces cancer. The atavistic the pseudo-multicellular mode of life and responses to selective model of cancer is undoubtedly effective in integrating many pressure.6,7 Indeed, exponential growth may lead to species parameters in a performing heuristic framework. It hypothesises extinction due to starvation or destruction of the protective that cancer results from a transition from multicellularity to biofilm. Earlier prokaryotes inevitably faced this problem and unicellularity, through an active constrained process. In this natural evolution proposed different solutions to circumvent schema, dysregulation of a set of fundamental points of them, which were thereafter fixed by heredity. vulnerability, which govern multicellularity maintenance, is Trigos et al.1 underlined that many hallmarks of the malignant sufficient to model carcinogenesis. -
Chapter 9. NATURAL SELECTION and BIOLOGICAL EVOLUTION
Chapter 9. NATURAL SELECTION AND BIOLOGICAL EVOLUTION Which beginning of time [the Creation] according to our Chronologie, fell upon the entrance of the night preced- ing the twenty third day of Octob. in the year of the Julian Calendar, 710 [i.e. B.C. 4004]. Archbishop James Ussher (1581—1656) The Annals of the World1 (1658:1) “How stupid not to have thought of that!” Thomas Huxley (1825-1895), about Darwin’s theory of Evolution by Nat- ural Selection. I. Introduction A. Classical Discoveries of Biology From the mid 18th Century to the early part of the 20th, a large fraction of biologists’ efforts went into two massive collective discoveries, the discovery of biotic diversity, and the discovery of evolution. Over the period from 1750 to 1950 the careful descriptive analyses of Swedish biol- ogist Karl von Linné and his followers showed there to be on the order of 10 million or so different types of living organisms. The differences in biotas in different parts of the world came to be appreciated, the amazing diversity of the tropics was documented, and previ- ously unimagined major groups of organisms were discovered, including microorganisms and the biota of odd habitats like the oceanic plankton. The sometimes bizarre and always impressive adaptation of organisms to their habitats and ways of life greatly impressed the early scientific naturalists, who argued that it proved the existence of an All Seeing Design- er. Similarly, paleontologists described a huge variety of fossil plants and animals. The succession of forms, and the presence of many detailed structural similarities between liv- ing and extinct forms, as well as structural parallels between living forms, strongly suggest- ed that living and ancient forms of life were connected by branching lines of descent. -
Monism and Morphology at the Turn of the Twentieth Century
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by IUScholarWorks From a draft. May differ from the published version, which appeared in Monism: Science, Philosophy, Religion, and the History of a Worldview, ed. Todd Weir, 135–158, New York: Palgrave USA, 2012. Monism and Morphology at the Turn of the Twentieth Century SANDER GLIBOFF Indiana University Abstract. Ernst Haeckel’s monistic worldview and his interpretation of Darwin’s theory of evolution worked together to help him rule out any role for divine providence or any non-material mind, spirit, will, or purpose in the organic world. In his account of 1866, the impersonal, unpredictable, and purposeless external environment was what drove evolutionary change. By around the turn of the twentieth century, however, new theories of evolution, heredity, and embryology were challenging Haeckel’s, but Haeckel no longer responded with his earlier vigor. Younger monistically oriented evolutionary biologists had to take the lead in modernizing and defending the monistic interpretation and the external causes of evolution. Three of these younger biologists are discussed here: Haeckel’s student, the morphologist-turned-theoretician Richard Semon (1859–1918); Ludwig Plate (1862–1937), who took over Haeckel’s chair at the University of Jena and became an influential journal editor and commentator on new research on heredity and evolution; and Paul Kammerer (1880–1926), whose experimental evidence for the modifying power of the environment was hotly debated. Despite their very different social, political, and religious backgrounds, their contrasting research methods and career trajectories, and their disagreements on the precise mechanisms of evolution, these three were united by their adherence to Haeckelian monistic principles. -
Unit 3 Cells Lesson 6 - Cell Theory What Do Living Things Have in Common?
Unit 3 Cells Lesson 6 - Cell Theory What do living things have in common? Explore and question spontaneous generation, an early belief on the properties of life. Observing Phenomena In the 1600s, this was a recipe for creating mice: Place a dirty shirt in an open container of wheat for 21 days and the wheat will transform into mice. 1) Discuss what you think of this recipe. People may have believed that it worked because they did not notice the mice that were living in and reproducing in the wheat containers and maybe hiding beneath the dirty shirts. Observing Phenomena Another belief of spontaneous generation was that fish formed from the mud of dry river beds. 2) What do you think about the recipe for making fish from the mud of a dried up river bed? Observing Phenomena People believed that these recipes would work because they believed in “spontaneous generation.” 3) Why do you think it is called spontaneous generation? Because a living thing spontaneously came into existence from a mixture of nonliving things. What beliefs about natural phenomena did you have as a young child? For example, some young children might think that clouds are fluffy like cotton balls or the moon is made of cheese. As you have gotten older, how have these beliefs changed as you acquired more knowledge? 4) Discuss why they might have believed these and what has changed people's understanding of living things today. Investigation 1: Categorizing Substances In your notebook, write a list of what you think all living things have in common. -
Uniting Micro- with Macroevolution Into an Extended Synthesis: Reintegrating Life’S Natural History Into Evolution Studies
Uniting Micro- with Macroevolution into an Extended Synthesis: Reintegrating Life’s Natural History into Evolution Studies Nathalie Gontier Abstract The Modern Synthesis explains the evolution of life at a mesolevel by identifying phenotype–environmental interactions as the locus of evolution and by identifying natural selection as the means by which evolution occurs. Both micro- and macroevolutionary schools of thought are post-synthetic attempts to evolution- ize phenomena above and below organisms that have traditionally been conceived as non-living. Microevolutionary thought associates with the study of how genetic selection explains higher-order phenomena such as speciation and extinction, while macroevolutionary research fields understand species and higher taxa as biological individuals and they attribute evolutionary causation to biotic and abiotic factors that transcend genetic selection. The microreductionist and macroholistic research schools are characterized as two distinct epistemic cultures where the former favor mechanical explanations, while the latter favor historical explanations of the evolu- tionary process by identifying recurring patterns and trends in the evolution of life. I demonstrate that both cultures endorse radically different notions on time and explain how both perspectives can be unified by endorsing epistemic pluralism. Keywords Microevolution · Macroevolution · Origin of life · Evolutionary biology · Sociocultural evolution · Natural history · Organicism · Biorealities · Units, levels and mechanisms of evolution · Major transitions · Hierarchy theory But how … shall we describe a process which nobody has seen performed, and of which no written history gives any account? This is only to be investigated, first, in examining the nature of those solid bodies, the history of which we want to know; and 2dly, in exam- ining the natural operations of the globe, in order to see if there now actually exist such operations, as, from the nature of the solid bodies, appear to have been necessary to their formation. -
Cooperation and Conflict During the Unicellular–Multicellular and Prokaryotic–Eukaryotic Transitions
Font-Ch17 8/1/03 6:43 PM Page 195 CHAPTER 17 Cooperation and conflict during the unicellular–multicellular and prokaryotic–eukaryotic transitions Richard E. Michod and Aurora M. Nedelcu Individuals often associate in groups that, under group. Initially, group fitness is taken to be the aver- certain conditions, may evolve into higher-level age of the lower-level fitnesses of its members, but, individuals. It is these conditions and this process as the evolutionary transition proceeds, group fit- of individuation of groups that we wish to under- ness becomes decoupled from the fitness of lower- stand. These groups may involve members of the level components. Witness, for example, colonies of same species or different species. For example, eusocial insects or the cell groups that form organ- under certain conditions bacteria associate to form isms; in these cases, some group members have no a fruiting body, amoebae associate to form a slug- individual fitness (sterile castes, somatic cells) yet like slime mold, solitary cells form a colonial group, this does not detract from the fitness of the group, normally solitary wasps breed cooperatively, birds indeed it is presumed to enhance it. associate to form a colony, and mammals form soci- The essence of an evolutionary transition in indi- eties. Likewise, individuals of different species viduality is that the lower-level individuals must as associate and form symbiotic associations; about it were “relinquish” their “claim” to fitness, that is 2000 million years ago, such an association evolved to flourish and multiply, in favor of the new higher- into the first mitochondriate eukaryotic cell. -
Biological Atomism and Cell Theory
Studies in History and Philosophy of Biological and Biomedical Sciences 41 (2010) 202–211 Contents lists available at ScienceDirect Studies in History and Philosophy of Biological and Biomedical Sciences journal homepage: www.elsevier.com/locate/shpsc Biological atomism and cell theory Daniel J. Nicholson ESRC Research Centre for Genomics in Society (Egenis), University of Exeter, Byrne House, St. Germans Road, Exeter EX4 4PJ, UK article info abstract Keywords: Biological atomism postulates that all life is composed of elementary and indivisible vital units. The activ- Biological atomism ity of a living organism is thus conceived as the result of the activities and interactions of its elementary Cell theory constituents, each of which individually already exhibits all the attributes proper to life. This paper sur- Organismal theory veys some of the key episodes in the history of biological atomism, and situates cell theory within this Reductionism tradition. The atomistic foundations of cell theory are subsequently dissected and discussed, together with the theory’s conceptual development and eventual consolidation. This paper then examines the major criticisms that have been waged against cell theory, and argues that these too can be interpreted through the prism of biological atomism as attempts to relocate the true biological atom away from the cell to a level of organization above or below it. Overall, biological atomism provides a useful perspective through which to examine the history and philosophy of cell theory, and it also opens up a new way of thinking about the epistemic decomposition of living organisms that significantly departs from the phys- icochemical reductionism of mechanistic biology. -
'Great Is Darwin and Bergson His Poet': Julian Huxley's Other
This is a repository copy of ‘Great is Darwin and Bergson his poet’: Julian Huxley's other evolutionary synthesis. White Rose Research Online URL for this paper: http://eprints.whiterose.ac.uk/124449/ Version: Accepted Version Article: Herring, E (2018) ‘Great is Darwin and Bergson his poet’: Julian Huxley's other evolutionary synthesis. Annals of Science, 75 (1). pp. 40-54. ISSN 0003-3790 https://doi.org/10.1080/00033790.2017.1407442 (c) 2018 Informa UK Limited, trading as Taylor & Francis Group. This is an Accepted Manuscript of an article published by Taylor & Francis in Annals of Science on 04 Jan 2018, available online: http://www.tandfonline.com/10.1080/00033790.2017.1407442 Reuse Items deposited in White Rose Research Online are protected by copyright, with all rights reserved unless indicated otherwise. They may be downloaded and/or printed for private study, or other acts as permitted by national copyright laws. The publisher or other rights holders may allow further reproduction and re-use of the full text version. This is indicated by the licence information on the White Rose Research Online record for the item. Takedown If you consider content in White Rose Research Online to be in breach of UK law, please notify us by emailing [email protected] including the URL of the record and the reason for the withdrawal request. [email protected] https://eprints.whiterose.ac.uk/ “Great is Darwin and Bergson his poet”: Julian Huxley’s Other Evolutionary Synthesis. Emily Herring School of Philosophy, Religion and History of Science, University of Leeds, Leeds, United Kingdom Email: [email protected] Address: School of Philosophy, Religion and History of Science, University of Leeds, Woodhouse Lane, Leeds, LS2 9JT, United Kingdom Orcid id: orcid.org/0000-0002-8377-6319 1 “Great is Darwin and Bergson his poet”: Julian Huxley’s Other Evolutionary Synthesis. -
Is the Germline Immortal and Continuous? a Discussion in Light of Ipscs and Germline Regeneration
Is the Germline Immortal and Continuous? A Discussion in Light of iPSCs and Germline Regeneration 1 1 Kate MacCord and B. Duygu Özpolat 1 - Marine Biological Laboratory, Woods Hole, MA, USA 1 ABSTRACT The germline gives rise to gametes, is the hereditary cell lineage, and is often called immortal and continuous. However, what exactly is immortal and continuous about the germline has recently come under scrutiny. The notion of an immortal and continuous germline has been around for over 130 years, and has led to the concept of a barrier between the germline and soma (the “Weismann barrier”). One repercussion of such a barrier is the understanding that when the germline is lost, soma cannot replace it, rendering the organism infertile. Recent research on induced pluripotent stem cells (iPSCs) and germline regeneration raise questions about the impermeability of the Weismann barrier and the designation of the germline as immortal and continuous. How we conceive of the germline and its immortality shapes what we perceive to be possible in animal biology, such as whether somatic cells contribute to the germline in some metazoans during normal development or regeneration. We argue that reassessing the universality of germline immortality and continuity across all metazoans leads to big and exciting open questions about the germ-soma cell distinction, cell reprogramming, germline editing, and even evolution. 2 1.0 Introduction The germline is the lineage of reproductive cells that includes gametes and their precursors, including primordial germ cells and germline stem cells. Because the germline gives rise to the gametes, it is the hereditary cell lineage, and is ultimately responsible for all cells in an organism’s body, including the next generation of the germline, stem cells, and other somatic cells. -
Reproduction of a Protocell by Replication of Minority Molecule in Catalytic Reaction Network
APS/123-QED Reproduction of a Protocell by Replication of Minority Molecule in Catalytic Reaction Network Atsushi Kamimura1 and Kunihiko Kaneko2, 3 1Department of Applied Physics, Graduate School of Engineering, The University of Tokyo, 7-3-1, Hongo, Bunkyo-ku, Tokyo 113-8656, Japan. 2Department of Basic Science, Graduate School of Arts and Sciences, The University of Tokyo, 3-8-1, Komaba, Meguro-ku, Tokyo 153-8902, Japan 3Complex Systems Biology Project, ERATO, JST, Tokyo, Japan. (Dated: October 31, 2018) Abstract For understanding the origin of life, it is essential to explain the development of a compartmen- talized structure, which undergoes growth and division, from a set of chemical reactions. In this study, a hypercycle with two chemicals that mutually catalyze each other is considered in order to show that the reproduction of a protocell with a growth-division process naturally occurs when the replication speed of one chemical is considerably slower than that of the other chemical. It is observed that the protocell divides after a minority molecule is replicated at a slow synthesis rate, and thus, a synchrony between the reproduction of a cell and molecule replication is achieved. The robustness of such protocells against the invasion of parasitic molecules is also demonstrated. arXiv:1005.1142v1 [q-bio.CB] 7 May 2010 PACS numbers: 87.17.-d, 05.40.-a, 82.39.-k 1 Filling a gap between just a set of catalytic reactions and a reproducing cell is a difficult problem; however, it is essential to fully understand this relationship to unveil the origin of life, to establish a theory for a living state, and to experimentally synthesize protocells[1].