Chapter 9. NATURAL SELECTION and BIOLOGICAL EVOLUTION
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The Parasitic Host: Symbiosis Contra Neo-Darwinism
Pli 9 (2000), 119-38. The Parasitic Host: Symbiosis contra Neo-Darwinism MICHELLE SPEIDEL Introduction Darwinism, and its modern formulation, neo-Darwinism, have often been the target of philosophically motivated attacks which centre on what are often seen as the ideological underpinnings, assumptions or consequences that are believed to emanate from Darwinism’s Malthusian origins. More often than not, these attacks focus on the ‘improper’ extensions of Darwinism into the social realm, in the areas of social engineering, evolutionary psychology (or its much-derided former incarnation, sociobiology), biopolitics, and the like. Occasionally, some attacks on Darwinism and neo-Darwinism have a force that is more ‘scientific’ in nature, that is, the attacks on the ideology attempt to show the entailment of real consequences for the methodology and practice of biological science itself, and are serious challenges not just to the ideological aspects of Darwinism, but to the theory itself. The group of approaches to evolution that can be grouped under the heading of ‘symbiosis’ appear to be challenges of precisely this kind. Symbiosis, the phenomenon that describes the ‘coevolution’ of two distinct species into a partnership-oriented evolutionary relationship, does appear at first glance to be absent from most descriptions of neo- Darwinism as a scientific theory, since such descriptions invariably prescribe competition as the primary impetus for evolutionary change. As I hope to show, there is a real sense in which a theory which emphasises competition cannot explain cooperative behaviours, except by fairly circuitous reroutings of the operational terms of the theory. Furthermore, I will argue that the real strength of symbiosis as a challenge to neo- 120 Pli 9 (2000) Darwinism lies in the very notion of symbiosis itself, quite apart from the ‘cooperative’ nature of symbiotic associations. -
Framing Major Prebiotic Transitions As Stages of Protocell Development: Three Challenges for Origins-Of-Life Research
Framing major prebiotic transitions as stages of protocell development: three challenges for origins-of-life research Ben Shirt-Ediss1, Sara Murillo-Sánchez2,3 and Kepa Ruiz-Mirazo*2,3 Commentary Open Access Address: Beilstein J. Org. Chem. 2017, 13, 1388–1395. 1Interdisciplinary Computing and Complex BioSystems Group, doi:10.3762/bjoc.13.135 University of Newcastle, UK, 2Dept. Logic and Philosophy of Science, University of the Basque Country, Spain and 3Biofisika Institute Received: 16 February 2017 (CSIC, UPV-EHU), Spain Accepted: 27 June 2017 Published: 13 July 2017 Email: Kepa Ruiz-Mirazo* - [email protected] This article is part of the Thematic Series "From prebiotic chemistry to molecular evolution". * Corresponding author Guest Editor: L. Cronin Keywords: functional integration; origins of life; prebiotic evolution; protocells © 2017 Shirt-Ediss et al.; licensee Beilstein-Institut. License and terms: see end of document. Abstract Conceiving the process of biogenesis as the evolutionary development of highly dynamic and integrated protocell populations provides the most appropriate framework to address the difficult problem of how prebiotic chemistry bridged the gap to full-fledged living organisms on the early Earth. In this contribution we briefly discuss the implications of taking dynamic, functionally inte- grated protocell systems (rather than complex reaction networks in bulk solution, sets of artificially evolvable replicating molecules, or even these same replicating molecules encapsulated in passive compartments) -
Copyright by Paul Harold Rubinson 2008
Copyright by Paul Harold Rubinson 2008 The Dissertation Committee for Paul Harold Rubinson certifies that this is the approved version of the following dissertation: Containing Science: The U.S. National Security State and Scientists’ Challenge to Nuclear Weapons during the Cold War Committee: —————————————————— Mark A. Lawrence, Supervisor —————————————————— Francis J. Gavin —————————————————— Bruce J. Hunt —————————————————— David M. Oshinsky —————————————————— Michael B. Stoff Containing Science: The U.S. National Security State and Scientists’ Challenge to Nuclear Weapons during the Cold War by Paul Harold Rubinson, B.A.; M.A. Dissertation Presented to the Faculty of the Graduate School of The University of Texas at Austin in Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy The University of Texas at Austin August 2008 Acknowledgements Thanks first and foremost to Mark Lawrence for his guidance, support, and enthusiasm throughout this project. It would be impossible to overstate how essential his insight and mentoring have been to this dissertation and my career in general. Just as important has been his camaraderie, which made the researching and writing of this dissertation infinitely more rewarding. Thanks as well to Bruce Hunt for his support. Especially helpful was his incisive feedback, which both encouraged me to think through my ideas more thoroughly, and reined me in when my writing overshot my argument. I offer my sincerest gratitude to the Smith Richardson Foundation and Yale University International Security Studies for the Predoctoral Fellowship that allowed me to do the bulk of the writing of this dissertation. Thanks also to the Brady-Johnson Program in Grand Strategy at Yale University, and John Gaddis and the incomparable Ann Carter-Drier at ISS. -
Publications of Peter H. Raven
Peter H. Raven LIST OF PUBLICATIONS 1950 1. 1950 Base Camp botany. Pp. 1-19 in Base Camp 1950, (mimeographed Sierra Club report of trip). [Upper basin of Middle Fork of Bishop Creek, Inyo Co., CA]. 1951 2. The plant list interpreted for the botanical low-brow. Pp. 54-56 in Base Camp 1951, (mimeographed Sierra Club report of trip). 3. Natural science. An integral part of Base Camp. Pp. 51-52 in Base Camp 1951, (mimeographed Sierra Club report of trip). 4. Ediza entomology. Pp. 52-54 in Base Camp 1951, (mimeographed Sierra Club report of trip). 5. 1951 Base Camp botany. Pp. 51-56 in Base Camp 1951, (mimeographed Sierra Club report of trip). [Devils Postpile-Minaret Region, Madera and Mono Counties, CA]. 1952 6. Parsley for Marin County. Leafl. West. Bot. 6: 204. 7. Plant notes from San Francisco, California. Leafl. West. Bot. 6: 208-211. 8. 1952 Base Camp bird list. Pp. 46-48 in Base Camp 1952, (mimeographed Sierra Club report of trip). 9. Charybdis. Pp. 163-165 in Base Camp 1952, (mimeographed Sierra Club report of trip). 10. 1952 Base Camp botany. Pp. 1-30 in Base Camp 1952, (mimeographed Sierra Club report of trip). [Evolution Country - Blaney Meadows - Florence Lake, Fresno, CA]. 11. Natural science report. Pp. 38-39 in Base Camp 1952, (mimeographed Sierra Club report of trip). 1953 12. 1953 Base Camp botany. Pp. 1-26 in Base Camp 1953, (mimeographed Sierra Club report of trip). [Mono Recesses, Fresno Co., CA]. 13. Ecology of the Mono Recesses. Pp. 109-116 in Base Camp 1953, (illustrated by M. -
Uniting Micro- with Macroevolution Into an Extended Synthesis: Reintegrating Life’S Natural History Into Evolution Studies
Uniting Micro- with Macroevolution into an Extended Synthesis: Reintegrating Life’s Natural History into Evolution Studies Nathalie Gontier Abstract The Modern Synthesis explains the evolution of life at a mesolevel by identifying phenotype–environmental interactions as the locus of evolution and by identifying natural selection as the means by which evolution occurs. Both micro- and macroevolutionary schools of thought are post-synthetic attempts to evolution- ize phenomena above and below organisms that have traditionally been conceived as non-living. Microevolutionary thought associates with the study of how genetic selection explains higher-order phenomena such as speciation and extinction, while macroevolutionary research fields understand species and higher taxa as biological individuals and they attribute evolutionary causation to biotic and abiotic factors that transcend genetic selection. The microreductionist and macroholistic research schools are characterized as two distinct epistemic cultures where the former favor mechanical explanations, while the latter favor historical explanations of the evolu- tionary process by identifying recurring patterns and trends in the evolution of life. I demonstrate that both cultures endorse radically different notions on time and explain how both perspectives can be unified by endorsing epistemic pluralism. Keywords Microevolution · Macroevolution · Origin of life · Evolutionary biology · Sociocultural evolution · Natural history · Organicism · Biorealities · Units, levels and mechanisms of evolution · Major transitions · Hierarchy theory But how … shall we describe a process which nobody has seen performed, and of which no written history gives any account? This is only to be investigated, first, in examining the nature of those solid bodies, the history of which we want to know; and 2dly, in exam- ining the natural operations of the globe, in order to see if there now actually exist such operations, as, from the nature of the solid bodies, appear to have been necessary to their formation. -
Lynn Margulis and Dorion Sagan, Acquiring Genomes
CONTENTS Forewordby Ernst Mayr XI xv CaJ1•1thtO JOOJ by lfnn M.,1i1ll1111J l>nrlun S1tc11n Preface Pulttl1h,Jby 1111k Rook,, PART ONE. THE EVOLUTIONARY IMPERATIVE AM,mber of rh, l'wucu1Book, Group. 1 Darwinism Not Neodarwinism 3 Allrlahu re1crved. Printed in the United States of America. No part of this book may be 2 Darwin's Dilemma 25 rc~r<>ducedin any manner whatsoever without written permission except in the case of 3 Relative Individuality 51 briefquotations embodied in critical articles and reviews.For information, address Basic 67 Books, 387 Park Avenue South, New York NY 10016-8810. 4 The Natural Selector 5 Principles of Evolutionary Novelty 71 Library of Congress Cataloging-in-Publication Data PART TWO. THE MICROBE IN EVOLUTION Margulis, Lynn, 1938- Acquiring genomes : a theory of the origins of species / Lynn Margulis and Dorion 6 Species and Cells 81 Sagan.-lst ed. 7 History of the Heritable 89 p. cm. Includes bibiliographical references PART THREE. PLANETARY LEGACY ISBN 0-465-04391-7 (hardcover) 1. Species. 2. Symbiogenesis. 3. Evolution (Biology). 4. Sagan Dorion 1959- II 123 Title. ' ' . 8 Gaian Planet 139 QH380 .M37 2002 9 Eukaryosis in an Anoxic World 576.8'6-dc21 2002001521 PART FOUR. CONSORTIA 165 Text design by TrishWilkimon 10 Seaworthy Alliances Set in 12.5-point AGaramond by The Perseus Books Group 11 Plant Proclivities 185 12 Chromosome Dance: The Fission Theory 191 FIRST EDITION 13 Darwin Revisited: 02 03 04 05 / IO 9 8 7 6 5 4 3 2 1 Spedes in the Evolutionary Dialogue 201 ..•,, •HI /,,/tit,,,,,,/ 1//11,11,111,,,,, -
Reproduction of a Protocell by Replication of Minority Molecule in Catalytic Reaction Network
APS/123-QED Reproduction of a Protocell by Replication of Minority Molecule in Catalytic Reaction Network Atsushi Kamimura1 and Kunihiko Kaneko2, 3 1Department of Applied Physics, Graduate School of Engineering, The University of Tokyo, 7-3-1, Hongo, Bunkyo-ku, Tokyo 113-8656, Japan. 2Department of Basic Science, Graduate School of Arts and Sciences, The University of Tokyo, 3-8-1, Komaba, Meguro-ku, Tokyo 153-8902, Japan 3Complex Systems Biology Project, ERATO, JST, Tokyo, Japan. (Dated: October 31, 2018) Abstract For understanding the origin of life, it is essential to explain the development of a compartmen- talized structure, which undergoes growth and division, from a set of chemical reactions. In this study, a hypercycle with two chemicals that mutually catalyze each other is considered in order to show that the reproduction of a protocell with a growth-division process naturally occurs when the replication speed of one chemical is considerably slower than that of the other chemical. It is observed that the protocell divides after a minority molecule is replicated at a slow synthesis rate, and thus, a synchrony between the reproduction of a cell and molecule replication is achieved. The robustness of such protocells against the invasion of parasitic molecules is also demonstrated. arXiv:1005.1142v1 [q-bio.CB] 7 May 2010 PACS numbers: 87.17.-d, 05.40.-a, 82.39.-k 1 Filling a gap between just a set of catalytic reactions and a reproducing cell is a difficult problem; however, it is essential to fully understand this relationship to unveil the origin of life, to establish a theory for a living state, and to experimentally synthesize protocells[1]. -
Reticulate Evolution Everywhere
Reticulate Evolution Everywhere Nathalie Gontier Abstract Reticulation is a recurring evolutionary pattern found in phylogenetic reconstructions of life. The pattern results from how species interact and evolve by mechanisms and processes including symbiosis; symbiogenesis; lateral gene transfer (that occurs via bacterial conjugation, transformation, transduction, Gene Transfer Agents, or the movements of transposons, retrotransposons, and other mobile genetic elements); hybridization or divergence with gene flow; and infec- tious heredity (induced either directly by bacteria, bacteriophages, viruses, pri- ons, protozoa and fungi, or via vectors that transmit these pathogens). Research on reticulate evolution today takes on inter- and transdisciplinary proportions and is able to unite distinct research fields ranging from microbiology and molecular genetics to evolutionary biology and the biomedical sciences. This chapter sum- marizes the main principles of the diverse reticulate evolutionary mechanisms and situates them into the chapters that make up this volume. Keywords Reticulate evolution · Symbiosis · Symbiogenesis · Lateral Gene Transfer · Infectious agents · Microbiome · Viriome · Virolution · Hybridization · Divergence with gene flow · Evolutionary patterns · Extended Synthesis 1 Reticulate Evolution: Patterns, Processes, Mechanisms According to the Online Etymology Dictionary (http://www.etymonline.com), the word reticulate is an adjective that stems from the Latin words “re¯ticulātus” (having a net-like pattern) and re¯ticulum (little net). When scholars identify the evolution of life as being “reticulated,” they first and foremost refer to a recurring evolutionary pattern. N. Gontier (*) AppEEL—Applied Evolutionary Epistemology Lab, University of Lisbon, Lisbon, Portugal e-mail: [email protected] © Springer International Publishing Switzerland 2015 1 N. Gontier (ed.), Reticulate Evolution, Interdisciplinary Evolution Research 3, DOI 10.1007/978-3-319-16345-1_1 2 N. -
Records, 1969-1973
Records, 1969-1973 Finding aid prepared by Smithsonian Institution Archives Smithsonian Institution Archives Washington, D.C. Contact us at [email protected] Table of Contents Collection Overview ........................................................................................................ 1 Administrative Information .............................................................................................. 1 Historical Note.................................................................................................................. 1 Introduction....................................................................................................................... 1 Descriptive Entry.............................................................................................................. 1 Names and Subjects ...................................................................................................... 2 Container Listing ............................................................................................................. 4 Series 1: GENERAL ORGANIZATION..................................................................... 4 Series 2: PROGRAM................................................................................................ 6 Records https://siarchives.si.edu/collections/siris_arc_217299 Collection Overview Repository: Smithsonian Institution Archives, Washington, D.C., [email protected] Title: Records Identifier: Record Unit 7141 Date: 1969-1973 Extent: 4.5 cu. ft. (9 document boxes) Creator:: -
According to Science Ramy Brustein Ben-Gurion University of the Negev
The Creation of the World – According to Science Ramy Brustein Ben-Gurion University of the Negev How was the world created? People have asked this ever since they could ask anything, and answers have come from all sides: from religion, tradition, philosophy, mysticism….and science. While this does not seem like a problem amenable to scientific measurement, it has led scientists to come up with fascinating ideas and observations: the Big Bang, the concept of inflation, the fact that most of the world is made up of dark matter and dark energy which we cannot perceive, and more. Of course scientists cannot claim to know the definitive truth. But we can approach the question from a scientific viewpoint and see what we find out. How do we do that? First, we look to the data. Thanks to modern technology, we have much more information than did people of previous ages who asked the same question. Then we can use scientific methods and techniques to analyze the data, organize them in a coherent way and try and extract an answer. This process and its main findings will be described in the lecture. The Ghosts in the (Primitive) Soup: A Review of Some of the Debates that Shaped Early Discussions on the Origin and Nature of Life Antonio Lazcano Universidad Nacional Autónoma de México The heterotrophic origin of life proposed by Oparin and Haldane in the 1920’s was part of a Darwinian framework that assumed that living organisms were the historical outcome of a gradual transformation of lifeless matter. This idea was strongly opposed by the geneticist H. -
Carl Sagan 1934–1996
Carl Sagan 1934–1996 A Biographical Memoir by David Morrison ©2014 National Academy of Sciences. Any opinions expressed in this memoir are those of the author and do not necessarily reflect the views of the National Academy of Sciences. CARL SAGAN November 9, 1934–December 20, 1996 Awarded 1994 NAS Pubic Welfare Medal Carl Edward Sagan was a founder of the modern disci- plines of planetary science and exobiology (which studies the potential habitability of extraterrestrial environments for living things), and he was a brilliant educator who was able to inspire public interest in science. A visionary and a committed defender of rational scientific thinking, he transcended the usual categories of academia to become one of the world’s best-known scientists and a true celebrity. NASA Photo Courtesy of Sagan was propelled in his careers by a wealth of talent, By David Morrison a large share of good luck, and an intensely focused drive to succeed. His lifelong quests were to understand our plane- tary system, to search for life beyond Earth, and to communicate the thrill of scientific discovery to others. As an advisor to the National Aeronautics and Space Administration (NASA) and a member of the science teams for the Mariner, Viking, Voyager, and Galileo missions, he was a major player in the scientific exploration of the solar system. He was also a highly popular teacher, but his influence reached far beyond the classroom through his vivid popular writing and his mastery of the medium of television. The early years Born in 1934, Sagan grew up in a workingclass Jewish neighborhood of Brooklyn, New York, and attended public schools there and in Rahway, New Jersey. -
Evolution, Development, and the Units of Selection (Epigenesis/Modern Synthesis/Preformation/Somatic Embryogenesis/Weismann's Doctrine) LEO W
Proc. Nat. Acad. Sci. USA Vol. 80, pp. 1387-1391, March 1983 Evolution Evolution, development, and the units of selection (epigenesis/Modern Synthesis/preformation/somatic embryogenesis/Weismann's doctrine) LEO W. Buss Department of Biology and Peabody Museum of Natural History, Yale University, New Haven, Connecticut 06511 Communicated by G, Evelyn Hutchinson, December 17, 1982 ABSTRACT The "Modern Synthesis" forms the foundation of those working with the comparative embryology of vertebrates, current evolutionary theory. It is based on variation among indi- saw strong evidence for Weismann's scheme in the sequestering viduals within populations. Variations within individuals are be- of germ cells during early embryology. Finally, several inves- lieved to hold no phylogenetic significance because such variation tigators studying wound-healing had clearly illustrated that many cannot be transmitted to the germ line (i.e., Weismann's doctrine). somatic cells were, in fact, incapable of regeneration. Weismann's doctrine, however, does not apply to protists, fungi, Support for Weismann's doctrine was by no means universal. or plants and is an entirely unsupported assumption for 19 phyla Botanists were Weismann's earliest critics (5). Debate over the of animals. This fact requires that the Modern Synthesis be reex- issue was central in the development of the continuing rift be- amined and modified. tween botanists and zoologists despite the commonality of their interests (G. E. Hutchinson, personal communication). Al- The Darwinian notion of evolution as a process directed by se- though Weismann's doctrine was the subject of two very critical lection acting upon heritable variation has not been challenged reviews in the 20th century (6, 7), these criticisms fell on deaf seriously since Darwin first articulated it.