Individuality and Adaptation Across Levels of Selection: How Shall We Name and Generalize the Unit of Darwinism?
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Geographically Variable Biotic Interactions and Implications for Species Ranges
ORE Open Research Exeter TITLE Geographically variable biotic interactions and implications for species ranges AUTHORS Early, R; Keith, S JOURNAL Global Ecology and Biogeography DEPOSITED IN ORE 22 November 2018 This version available at http://hdl.handle.net/10871/34864 COPYRIGHT AND REUSE Open Research Exeter makes this work available in accordance with publisher policies. A NOTE ON VERSIONS The version presented here may differ from the published version. If citing, you are advised to consult the published version for pagination, volume/issue and date of publication 1 Geographically variable biotic interactions and implications for species 2 ranges 3 Running title: Geographic variation in biotic interactions 4 Abstract: 5 The challenge: Understanding how biotic interactions affect species’ geographic ranges, biodiversity 6 patterns, and ecological responses to environmental change is one of the most pressing challenges 7 in macroecology. Extensive efforts are underway to detect signals of biotic interactions in 8 macroecological data. However, efforts are limited by bias in the taxa and spatial scale for which 9 occurrence data are available, and by difficulty in ascribing causality to co-occurrence patterns. 10 Moreover, we are not necessarily looking in the right places: analyses are largely ad hoc, depending 11 on data availability, rather than focusing on regions, taxa, ecosystems, or interaction types where 12 biotic interactions might affect species’ geographic ranges most strongly. 13 Unpicking biotic interactions: We suggest that macroecology would benefit from recognising that 14 abiotic conditions alter two key components of biotic interaction strength: frequency and intensity. 15 We outline how and why variation in biotic interaction strength occurs, explore the implications for 16 species’ geographic ranges, and discuss the challenges inherent in quantifying these effects. -
Framing Major Prebiotic Transitions As Stages of Protocell Development: Three Challenges for Origins-Of-Life Research
Framing major prebiotic transitions as stages of protocell development: three challenges for origins-of-life research Ben Shirt-Ediss1, Sara Murillo-Sánchez2,3 and Kepa Ruiz-Mirazo*2,3 Commentary Open Access Address: Beilstein J. Org. Chem. 2017, 13, 1388–1395. 1Interdisciplinary Computing and Complex BioSystems Group, doi:10.3762/bjoc.13.135 University of Newcastle, UK, 2Dept. Logic and Philosophy of Science, University of the Basque Country, Spain and 3Biofisika Institute Received: 16 February 2017 (CSIC, UPV-EHU), Spain Accepted: 27 June 2017 Published: 13 July 2017 Email: Kepa Ruiz-Mirazo* - [email protected] This article is part of the Thematic Series "From prebiotic chemistry to molecular evolution". * Corresponding author Guest Editor: L. Cronin Keywords: functional integration; origins of life; prebiotic evolution; protocells © 2017 Shirt-Ediss et al.; licensee Beilstein-Institut. License and terms: see end of document. Abstract Conceiving the process of biogenesis as the evolutionary development of highly dynamic and integrated protocell populations provides the most appropriate framework to address the difficult problem of how prebiotic chemistry bridged the gap to full-fledged living organisms on the early Earth. In this contribution we briefly discuss the implications of taking dynamic, functionally inte- grated protocell systems (rather than complex reaction networks in bulk solution, sets of artificially evolvable replicating molecules, or even these same replicating molecules encapsulated in passive compartments) -
Chapter 9. NATURAL SELECTION and BIOLOGICAL EVOLUTION
Chapter 9. NATURAL SELECTION AND BIOLOGICAL EVOLUTION Which beginning of time [the Creation] according to our Chronologie, fell upon the entrance of the night preced- ing the twenty third day of Octob. in the year of the Julian Calendar, 710 [i.e. B.C. 4004]. Archbishop James Ussher (1581—1656) The Annals of the World1 (1658:1) “How stupid not to have thought of that!” Thomas Huxley (1825-1895), about Darwin’s theory of Evolution by Nat- ural Selection. I. Introduction A. Classical Discoveries of Biology From the mid 18th Century to the early part of the 20th, a large fraction of biologists’ efforts went into two massive collective discoveries, the discovery of biotic diversity, and the discovery of evolution. Over the period from 1750 to 1950 the careful descriptive analyses of Swedish biol- ogist Karl von Linné and his followers showed there to be on the order of 10 million or so different types of living organisms. The differences in biotas in different parts of the world came to be appreciated, the amazing diversity of the tropics was documented, and previ- ously unimagined major groups of organisms were discovered, including microorganisms and the biota of odd habitats like the oceanic plankton. The sometimes bizarre and always impressive adaptation of organisms to their habitats and ways of life greatly impressed the early scientific naturalists, who argued that it proved the existence of an All Seeing Design- er. Similarly, paleontologists described a huge variety of fossil plants and animals. The succession of forms, and the presence of many detailed structural similarities between liv- ing and extinct forms, as well as structural parallels between living forms, strongly suggest- ed that living and ancient forms of life were connected by branching lines of descent. -
Uniting Micro- with Macroevolution Into an Extended Synthesis: Reintegrating Life’S Natural History Into Evolution Studies
Uniting Micro- with Macroevolution into an Extended Synthesis: Reintegrating Life’s Natural History into Evolution Studies Nathalie Gontier Abstract The Modern Synthesis explains the evolution of life at a mesolevel by identifying phenotype–environmental interactions as the locus of evolution and by identifying natural selection as the means by which evolution occurs. Both micro- and macroevolutionary schools of thought are post-synthetic attempts to evolution- ize phenomena above and below organisms that have traditionally been conceived as non-living. Microevolutionary thought associates with the study of how genetic selection explains higher-order phenomena such as speciation and extinction, while macroevolutionary research fields understand species and higher taxa as biological individuals and they attribute evolutionary causation to biotic and abiotic factors that transcend genetic selection. The microreductionist and macroholistic research schools are characterized as two distinct epistemic cultures where the former favor mechanical explanations, while the latter favor historical explanations of the evolu- tionary process by identifying recurring patterns and trends in the evolution of life. I demonstrate that both cultures endorse radically different notions on time and explain how both perspectives can be unified by endorsing epistemic pluralism. Keywords Microevolution · Macroevolution · Origin of life · Evolutionary biology · Sociocultural evolution · Natural history · Organicism · Biorealities · Units, levels and mechanisms of evolution · Major transitions · Hierarchy theory But how … shall we describe a process which nobody has seen performed, and of which no written history gives any account? This is only to be investigated, first, in examining the nature of those solid bodies, the history of which we want to know; and 2dly, in exam- ining the natural operations of the globe, in order to see if there now actually exist such operations, as, from the nature of the solid bodies, appear to have been necessary to their formation. -
The Flight of the Locus of Selection Some Intricate Relationships
Behavioural Processes 161 (2019) 31–44 Contents lists available at ScienceDirect Behavioural Processes journal homepage: www.elsevier.com/locate/behavproc The flight of the locus of selection: Some intricate relationships between evolutionary elements T ⁎ April M. Becker University of North Texas, Department of Behavior Analysis, United States ARTICLE INFO ABSTRACT Keywords: Selection has enriched our understanding of the world since it was first applied to the evolution of species. Behavior Selection stands as an alternative to essentialist thinking, as a generalized and multiply applicable concept, and Selection as a causal explanation for current forms within biology and behavior. Attempts to describe selection processes Ontogenetic in a generalizable way have provided clarity about their minimal elements, such as replicators and interactors. Phylogenetic This paper discusses the interconnectedness among different levels of selection using evidence garnered from Interdisciplinary evolutionary biology, development, epigenetics, neuroscience, and behavior analysis. Currently, it appears that Evolutionary dynamics replicators and interactors may be more fluid than previously supposed and that selection for particular traits may rely on both multiple levels of interaction and multiple levels of replication. Replicators, interactors, and environment share influence on one another, and different replicators may exchange critical control over similar interactor variation as evolution proceeds. Our current understanding of selection continues to undergo revision, and reference to a number of disparate fields can help to account for the complexity of these processes. An understanding of their interconnectedness may help resolve some mysteries that develop in fields that ex- clusively focus on one or a few, such as the focused study of behavior. 1. -
Reproduction of a Protocell by Replication of Minority Molecule in Catalytic Reaction Network
APS/123-QED Reproduction of a Protocell by Replication of Minority Molecule in Catalytic Reaction Network Atsushi Kamimura1 and Kunihiko Kaneko2, 3 1Department of Applied Physics, Graduate School of Engineering, The University of Tokyo, 7-3-1, Hongo, Bunkyo-ku, Tokyo 113-8656, Japan. 2Department of Basic Science, Graduate School of Arts and Sciences, The University of Tokyo, 3-8-1, Komaba, Meguro-ku, Tokyo 153-8902, Japan 3Complex Systems Biology Project, ERATO, JST, Tokyo, Japan. (Dated: October 31, 2018) Abstract For understanding the origin of life, it is essential to explain the development of a compartmen- talized structure, which undergoes growth and division, from a set of chemical reactions. In this study, a hypercycle with two chemicals that mutually catalyze each other is considered in order to show that the reproduction of a protocell with a growth-division process naturally occurs when the replication speed of one chemical is considerably slower than that of the other chemical. It is observed that the protocell divides after a minority molecule is replicated at a slow synthesis rate, and thus, a synchrony between the reproduction of a cell and molecule replication is achieved. The robustness of such protocells against the invasion of parasitic molecules is also demonstrated. arXiv:1005.1142v1 [q-bio.CB] 7 May 2010 PACS numbers: 87.17.-d, 05.40.-a, 82.39.-k 1 Filling a gap between just a set of catalytic reactions and a reproducing cell is a difficult problem; however, it is essential to fully understand this relationship to unveil the origin of life, to establish a theory for a living state, and to experimentally synthesize protocells[1]. -
According to Science Ramy Brustein Ben-Gurion University of the Negev
The Creation of the World – According to Science Ramy Brustein Ben-Gurion University of the Negev How was the world created? People have asked this ever since they could ask anything, and answers have come from all sides: from religion, tradition, philosophy, mysticism….and science. While this does not seem like a problem amenable to scientific measurement, it has led scientists to come up with fascinating ideas and observations: the Big Bang, the concept of inflation, the fact that most of the world is made up of dark matter and dark energy which we cannot perceive, and more. Of course scientists cannot claim to know the definitive truth. But we can approach the question from a scientific viewpoint and see what we find out. How do we do that? First, we look to the data. Thanks to modern technology, we have much more information than did people of previous ages who asked the same question. Then we can use scientific methods and techniques to analyze the data, organize them in a coherent way and try and extract an answer. This process and its main findings will be described in the lecture. The Ghosts in the (Primitive) Soup: A Review of Some of the Debates that Shaped Early Discussions on the Origin and Nature of Life Antonio Lazcano Universidad Nacional Autónoma de México The heterotrophic origin of life proposed by Oparin and Haldane in the 1920’s was part of a Darwinian framework that assumed that living organisms were the historical outcome of a gradual transformation of lifeless matter. This idea was strongly opposed by the geneticist H. -
Evolution, Development, and the Units of Selection (Epigenesis/Modern Synthesis/Preformation/Somatic Embryogenesis/Weismann's Doctrine) LEO W
Proc. Nat. Acad. Sci. USA Vol. 80, pp. 1387-1391, March 1983 Evolution Evolution, development, and the units of selection (epigenesis/Modern Synthesis/preformation/somatic embryogenesis/Weismann's doctrine) LEO W. Buss Department of Biology and Peabody Museum of Natural History, Yale University, New Haven, Connecticut 06511 Communicated by G, Evelyn Hutchinson, December 17, 1982 ABSTRACT The "Modern Synthesis" forms the foundation of those working with the comparative embryology of vertebrates, current evolutionary theory. It is based on variation among indi- saw strong evidence for Weismann's scheme in the sequestering viduals within populations. Variations within individuals are be- of germ cells during early embryology. Finally, several inves- lieved to hold no phylogenetic significance because such variation tigators studying wound-healing had clearly illustrated that many cannot be transmitted to the germ line (i.e., Weismann's doctrine). somatic cells were, in fact, incapable of regeneration. Weismann's doctrine, however, does not apply to protists, fungi, Support for Weismann's doctrine was by no means universal. or plants and is an entirely unsupported assumption for 19 phyla Botanists were Weismann's earliest critics (5). Debate over the of animals. This fact requires that the Modern Synthesis be reex- issue was central in the development of the continuing rift be- amined and modified. tween botanists and zoologists despite the commonality of their interests (G. E. Hutchinson, personal communication). Al- The Darwinian notion of evolution as a process directed by se- though Weismann's doctrine was the subject of two very critical lection acting upon heritable variation has not been challenged reviews in the 20th century (6, 7), these criticisms fell on deaf seriously since Darwin first articulated it. -
Holobionts As Units of Selection and a Model of Their Population Dynamics and Evolution
Biological Theory https://doi.org/10.1007/s13752-017-0287-1 ORIGINAL ARTICLE Holobionts as Units of Selection and a Model of Their Population Dynamics and Evolution Joan Roughgarden1,6 · Scott F. Gilbert2 · Eugene Rosenberg3 · Ilana Zilber‑Rosenberg4 · Elisabeth A. Lloyd5 Received: 15 January 2017 / Accepted: 5 September 2017 © Konrad Lorenz Institute for Evolution and Cognition Research 2017 Abstract Holobionts, consisting of a host and diverse microbial symbionts, function as distinct biological entities anatomically, metabolically, immunologically, and developmentally. Symbionts can be transmitted from parent to offspring by a variety of vertical and horizontal methods. Holobionts can be considered levels of selection in evolution because they are well- defined interactors, replicators/reproducers, and manifestors of adaptation. An initial mathematical model is presented to help understand how holobionts evolve. The model offered combines the processes of horizontal symbiont transfer, within-host symbiont proliferation, vertical symbiont transmission, and holobiont selection. The model offers equations for the popula- tion dynamics and evolution of holobionts whose hologenomes differ in gene copy number, not in allelic or loci identity. The model may readily be extended to include variation among holobionts in the gene identities of both symbionts and host. Keywords Holobiont · Holobiont model · Hologenome · Level of selection · Microbiome · Microbiota · Symbiont Introduction also provides a model for the evolution of a holobiont that combines microbe and host population processes. This article discusses the concept of a holobiont—an ani- Following Lederberg and McCray (2001), a microbiome mal or plant host together with all the microbes living on or refers to an “ecological community of commensal, symbi- in it, exosymbionts and endosymbionts, respectively. -
Prebiotic Network Evolution: Six Key Parameters
Molecular BioSystems Prebiotic Network Evolution: Six Key Parameters Journal: Molecular BioSystems Manuscript ID MB-ART-09-2015-000593.R1 Article Type: Review Article Date Submitted by the Author: 02-Oct-2015 Complete List of Authors: Nghe, Philippe; CNRS ESPCI ParisTech, Laboratoire de Biochimie Hordijk, Wim; SmartAnalytiX.com, Kauffman, Stuart; Institute for Systems Biology, Walker, Sara; Arizona State University, School of Earth and Space Exploration and Beyond Center for Fundamental Concepts in Science Schmidt, Francis; University of Missouri, Biochemistry Kemble, Harry; CNRS ESPCI ParisTech, Yeates, Jessica; Portland State University, Chemistry Lehman, Niles; Portland State University, Department of Chemistry Page 1 of 36 Molecular BioSystems Prebiotic Network Evolution: Six Key Parameters Philippe Nghe 1†, Wim Hordijk 2†, Stuart A. Kauffman 3, Sara I. Walker 4, Francis J. Schmidt 5, Harry Kemble 1, Jessica A.M. Yeates 6, and Niles Lehman 6* 1 Laboratoire de Biochimie, CNRS - ESPCI ParisTech, France 2 SmartAnalytiX.com, Lausanne, Switzerland 3 Institute for Systems Biology, Seattle, WA 98109 USA 4 School of Earth and Space Exploration and Beyond Center for Fundamental Concepts in Science, Arizona State University, Tempe, AZ 85287 USA 5 Department of Biochemistry, University of Missouri, 117 Schweitzer Hall, Columbia, MO 65211, USA 6 Department of Chemistry, Portland State University, PO Box 751, Portland, OR 97207 USA †These authors contributed equally to this work. *To whom correspondence should be addressed at: Niles Lehman Department of Chemistry Portland State University PO Box 751 Portland, OR 97207 +1-503-725-8769 [email protected] 1 Molecular BioSystems Page 2 of 36 Abstract The origins of life likely required the cooperation among a set of molecular species interacting in a network. -
The Evolutionary Biology of Ourselves: Unit Requirements and Organizational Change in United States History
THE EVOLUTIONARY BIOLOGY OF OURSELVES: UNIT REQUIREMENTS AND ORGANIZATIONAL CHANGE IN UNITED STATES HISTORY Carl P. Lipo Department of Anthropology Box 353100 University of Washington Seattle, WA 98195-3100 (206) 543-5240 (206) 543-3285 FAX [email protected] Mark E. Madsen Emergent Media, Inc. 411 Fairview Ave. N. Suite 200 Seattle, WA 98109 [email protected] Lipo and Madsen: The Evolution Biology of Ourselves 2 INTRODUCTION Concerning the origins of “modern” American society from simpler beginnings, historian Henry Steele Commager wrote: “In the generation after Appomattox the pattern of our present society and economy took shape. Growth--in area, numbers, wealth, power, social complexity, and economic maturity--was the one most arresting fact. The political divisions of the republic were drawn in their final form … and an American empire was established” (Nevins and Commager 1956:241). Theories of cultural evolution in their various forms posit that cultural development occurs as a consequence of the expansion of societies coupled with increased control over social and technical activities (e.g., White 1949; cf. Harris 1968). Growth necessarily precedes organizational change because it provides the impetus for change. Studies of complex societies, whether prehistoric, historic, or contemporary have frequently taken this stance. Numerous challenges have been made to cultural evolution. Over the past decade scientific, or Darwinian, evolutionary theory has become an increasing focus of anthropological research into cultural change. Interest in Darwinian theory is evident both in general anthropology (e.g., Boyd and Richerson 1985; Rogers 1995; Smith and Winterhalder 1992) and in archaeology (e.g., Barton and Clark 1997; Dunnell 1980, 1989, 1992, 1995; Feathers 1990, 1993; Leonard and Jones 1987; Leonard and Reed 1993; Lipo et al. -
Ideas Are Not Replicators but Minds Are
Ideas are Not Replicators but Minds Are To appear in vol. 19(1) of Biology and Philosophy (ms # BIPH264-02). Liane Gabora [email protected] Department of Psychology University of California, Berkeley 3210 Tolman Hall, Berkeley CA 94720-1650 USA CONTENTS 1 Does Culture Evolve like Biological Lineages Do? ..................................................................... 2 2 Two Kinds of Replicators ............................................................................................................. 3 2.1 Coded Replicators ................................................................................................................. 4 2.2 Primitive Replicators ............................................................................................................. 5 3 Does Anything in Culture Constitute a Replicator? ..................................................................... 7 3.1 Ideas and Artifacts are not Coded Replicators ...................................................................... 8 3.1.1 Are Cultural Entities Interpreted ?.................................................................................. 8 3.1.2 Are Cultural Entities Copied (without Interpretation)? .................................................. 9 3.2 Interconnected Worldview as Primitive Replicator ............................................................. 10 3.2.1 Conceptual Closure ...................................................................................................... 11 4 Implications for the Evolution