Microevolution and the Genetics of Populations Microevolution Refers to Varieties Within a Given Type
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Evolution by Natural Selection, Formulated Independently by Charles Darwin and Alfred Russel Wallace
UNIT 4 EVOLUTIONARY PATT EVOLUTIONARY E RNS AND PROC E SS E Evolution by Natural S 22 Selection Natural selection In this chapter you will learn that explains how Evolution is one of the most populations become important ideas in modern biology well suited to their environments over time. The shape and by reviewing by asking by applying coloration of leafy sea The rise of What is the evidence for evolution? Evolution in action: dragons (a fish closely evolutionary thought two case studies related to seahorses) 22.1 22.4 are heritable traits that with regard to help them to hide from predators. The pattern of evolution: The process of species have changed evolution by natural and are related 22.2 selection 22.3 keeping in mind Common myths about natural selection and adaptation 22.5 his chapter is about one of the great ideas in science: the theory of evolution by natural selection, formulated independently by Charles Darwin and Alfred Russel Wallace. The theory explains how T populations—individuals of the same species that live in the same area at the same time—have come to be adapted to environments ranging from arctic tundra to tropical wet forest. It revealed one of the five key attributes of life: Populations of organisms evolve. In other words, the heritable characteris- This chapter is part of the tics of populations change over time (Chapter 1). Big Picture. See how on Evolution by natural selection is one of the best supported and most important theories in the history pages 516–517. of scientific research. -
Introduction to Macroevolution
Spring, 2012 Phylogenetics 200A Modes of Macroevolution Macroevolution is used to refer to any evolutionary change at or above the level of species. Darwin illustrated the combined action of descent with modification, the principle of divergence, and extinction in the only figure in On the Origin of Species (Fig. 1), showing the link between microevolution and macroevolution. The New Synthesis sought to distance itself from the ‘origin of species’ (= macroevolution) and concentrated instead on microevolution - variation within populations and reproductive isolation. “Darwin’s principle of divergence derives from what he thought to be one of the most potent components of the struggle for existence. He argued that the strongest interactions would be among individuals within a population or among closely related populations or species, because these organisms have the most similar requirements. Darwin’s principle of divergence predicts that the individuals, populations or species most likely to succeed in the struggle are those that differ most from their close relatives in the way they achieve their needs for survival and reproduction.” (Reznick & Ricklefs 2009. Nature 457) Macroevolution also fell into disfavor with its invocation for hopeful monsters in development as well as its implication in some Neo-Lamarckian theories. Interest in macroevolution revived by several paleontologists including Steven Stanley, Stephen Jay Gould and Niles Eldredge, the latter two in the context of punctuated equilibrium. They proposed that what happens in evolution beyond the species level is due to processes that operate beyond the level of populations – including species selection. Niles Eldredge, in particular, has written extensively on the macroevolutionary hierarchy. -
And Ford, I; Ford, '953) on the Other Hand Have Put Forward a View Intermediate Between the Extreme Ones of Darwin on the One Hand and Goldschmidt on the Other
THE EVOLUTION OF MIMICRY IN THE BUTTERFLY PAPILIO DARDANUS C. A. CLARKE and P. M. SHEPPARD Departments of Medicine and Zoology, University of Liverpool Received23.V.59 1.INTRODUCTION WHENBatesputforward the mimicry hypothesis which bears his name, Darwin (1872), although accepting it, had some difficulty in explaining the evolution of the mimetic resemblance of several distinct species to one distasteful model by a series of small changes, a require- ment of his general theory of evolution. He said "it is necessary to suppose in some cases that ancient members belonging to several distinct groups, before they had diverged to their present extent, accidentally resembled a member of another and protected group in a sufficient degree to afford some slight protection; this having given the basis for the subsequent acquisition of the most perfect resemb- lance ". Punnett (1915) realised that the difficulty is even more acute when one is dealing with a polymorphic species whose forms mimic very distantly related models. Knowing that, in those butterflies which had been investigated genetically, the forms differed by single allelomorphs he concluded that the mimicry did not evolve gradually and did not confer any advantage or disadvantage to the individual. He argued that an allelomorph arises at a single step by mutation and that therefore the mimicry also arises by chance at a single step. Goldschmidt (x) although not denying that mimicry confers some advantage to its possessors also maintained that the resemblance arises fully perfected by a single mutation of a gene distinct from that producing the colour pattern in the model, but producing a similar effect in the mimic. -
Allele Frequency–Based and Polymorphism-Versus
View metadata, citation and similar papers at core.ac.uk brought to you by CORE Allele Frequency–Based and Polymorphism-Versus- provided by PubMed Central Divergence Indices of Balancing Selection in a New Filtered Set of Polymorphic Genes in Plasmodium falciparum Lynette Isabella Ochola,1 Kevin K. A. Tetteh,2 Lindsay B. Stewart,2 Victor Riitho,1 Kevin Marsh,1 and David J. Conway*,2 1Kenya Medical Research Institute, Centre for Geographic Medicine Research Coast, Kilifi, Kenya 2Department of Infectious and Tropical Diseases, London School of Hygiene and Tropical Medicine, London, United Kingdom *Corresponding author: E-mail: [email protected], [email protected]. Associate editor: John H. McDonald Research article Abstract Signatures of balancing selection operating on specific gene loci in endemic pathogens can identify candidate targets of naturally acquired immunity. In malaria parasites, several leading vaccine candidates convincingly show such signatures when subjected to several tests of neutrality, but the discovery of new targets affected by selection to a similar extent has been slow. A small minority of all genes are under such selection, as indicated by a recent study of 26 Plasmodium falciparum merozoite- stage genes that were not previously prioritized as vaccine candidates, of which only one (locus PF10_0348) showed a strong signature. Therefore, to focus discovery efforts on genes that are polymorphic, we scanned all available shotgun genome sequence data from laboratory lines of P. falciparum and chose six loci with more than five single nucleotide polymorphisms per kilobase (including PF10_0348) for in-depth frequency–based analyses in a Kenyan population (allele sample sizes .50 for each locus) and comparison of Hudson–Kreitman–Aguade (HKA) ratios of population diversity (p) to interspecific divergence (K) from the chimpanzee parasite Plasmodium reichenowi. -
Comparative Evolution: Latent Potentials for Anagenetic Advance (Adaptive Shifts/Constraints/Anagenesis) G
Proc. Natl. Acad. Sci. USA Vol. 85, pp. 5141-5145, July 1988 Evolution Comparative evolution: Latent potentials for anagenetic advance (adaptive shifts/constraints/anagenesis) G. LEDYARD STEBBINS* AND DANIEL L. HARTLtt *Department of Genetics, University of California, Davis, CA 95616; and tDepartment of Genetics, Washington University School of Medicine, Box 8031, 660 South Euclid Avenue, Saint Louis, MO 63110 Contributed by G. Ledyard Stebbins, April 4, 1988 ABSTRACT One of the principles that has emerged from genetic variation available for evolutionary changes (2), a experimental evolutionary studies of microorganisms is that major concern of modem evolutionists is explaining how the polymorphic alleles or new mutations can sometimes possess a vast amount of genetic variation that actually exists can be latent potential to respond to selection in different environ- maintained. Given the fact that in complex higher organisms ments, although the alleles may be functionally equivalent or most new mutations with visible effects on phenotype are disfavored under typical conditions. We suggest that such deleterious, many biologists, particularly Kimura (3), have responses to selection in microorganisms serve as experimental sought to solve the problem by proposing that much genetic models of evolutionary advances that occur over much longer variation is selectively neutral or nearly so, at least at the periods of time in higher organisms. We propose as a general molecular level. Amidst a background of what may be largely evolutionary principle that anagenic advances often come from neutral or nearly neutral genetic variation, adaptive evolution capitalizing on preexisting latent selection potentials in the nevertheless occurs. While much of natural selection at the presence of novel ecological opportunity. -
Adaptive Radiation Driven by the Interplay of Eco-Evolutionary and Landscape Dynamics R
Adaptive radiation driven by the interplay of eco-evolutionary and landscape dynamics R. Aguilée, D. Claessen, A. Lambert To cite this version: R. Aguilée, D. Claessen, A. Lambert. Adaptive radiation driven by the interplay of eco-evolutionary and landscape dynamics. Evolution - International Journal of Organic Evolution, Wiley, 2013, 67 (5), pp.1291-1306. 10.1111/evo.12008. hal-00838275 HAL Id: hal-00838275 https://hal.archives-ouvertes.fr/hal-00838275 Submitted on 13 Apr 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Adaptive radiation driven by the interplay of eco-evolutionary and landscape dynamics Robin Aguil´eea;b;∗, David Claessenb and Amaury Lambertc;d Published in Evolution, 2013, 67(5): 1291{1306 with doi: 10.1111/evo.12008 a Institut des Sciences de l'Evolution´ de Montpellier (UMR 5554), Univ Montpellier II, CNRS, Montpellier, France b Laboratoire Ecologie´ et Evolution´ (UMR 7625), UPMC Univ Paris 06, Ecole´ Normale Sup´erieure,CNRS, Paris, France c Laboratoire Probabilit´eset Mod`elesAl´eatoires(LPMA) CNRS UMR 7599, UPMC Univ Paris 06, Paris, France. d Center for Interdisciplinary Research in Biology (CIRB) CNRS UMR 7241, Coll`egede France, Paris, France ∗ Corresponding author. -
Phenotypic Plasticity Vs. Microevolution in Relation to Climate Change Noticeable Impacts of Climate Change Phenotypic Plasticit
6/6/14 Phenotypic Plasticity vs. Microevolution in Relation to Climate Change By Elizabeth Berry, Alex Lefort, Andy Tran, and Maya Vrba (EPA, 2013) Noticeable Impacts of Climate Change Phenotypic Plasticity vs Microevolution !! Canadian Squirrel: earlier breeding !! Phenotypic Plasticity: The ability of a genotype to produce different phenotypes in different environments (Charmantier & Gienapp 2013) !! American Mosquito: changes in dormancy !! Microevolution: Evolution in a small scale-within a single population (UC Museum of Paleontology 2008) !! Field Mustard plant: early blooming times !! Distinction: Phenotypic Plasticity acts on individuals, Microevolution acts on populations. !! Drosophila melanogaster: changes in gene flow !! Norm of Reaction: The range of phenotypic variation available to a given genotype that can change based on the environment. University of California Museum of Paleontology, 2008 European Great Tit: Parus major European Blackcap: Sylvia atricapilla !! Breeding times are evolving earlier in females to account for !! ADCYAP1: gene that controls the Climate Change. expression of migratory behavior !! Phenotypic Plasticity evident in (Mueller et al., 2011) laying times. !! Migratory activity is heritable and population-specific (Berthold & !! Some females having more flexible laying dates. Pulido 1994) ! Climate change causes evolving !! Success of offspring dependent ! on breeding times and caterpillar migratory patterns (Berthold & biomass coinciding, Pulido 1994) Jerry Nicholls and BBC, 2014 University of California -
NOTES – CH 17 – Evolution of Populations
NOTES – CH 17 – Evolution of Populations ● Vocabulary – Fitness – Genetic Drift – Punctuated Equilibrium – Gene flow – Adaptive radiation – Divergent evolution – Convergent evolution – Gradualism 17.1 – Genes & Variation ● Darwin developed his theory of natural selection without knowing how heredity worked…or how variations arise ● VARIATIONS are the raw materials for natural selection ● All of the discoveries in genetics fit perfectly into evolutionary theory! Genotype & Phenotype ● GENOTYPE : the particular combination of alleles an organism carries ● an organism’s genotype, together with environmental conditions, produces its PHENOTYPE ● PHENOTYPE : all physical, physiological, and behavioral characteristics of an organism (i.e. eye color, height ) Natural Selection ● NATURAL SELECTION acts directly on… …PHENOTYPES ! ● How does that work?...some individuals have phenotypes that are better suited to their environment…they survive & produce more offspring (higher fitness!) ● organisms with higher fitness pass more copies of their genes to the next generation! Do INDIVIDUALS evolve? ● NO! ● Individuals are born with a certain set of genes (and therefore phenotypes) ● If one or more of their phenotypes (i.e. tooth shape, flower color, etc.) are poorly adapted, they may be unable to survive and reproduce ● An individual CANNOT evolve a new phenotype in response to its environment So, EVOLUTION acts on… ● POPULATIONS! ● POPULATION = all members of a species that live in a particular area ● In a population, there exists a RANGE of phenotypes ● NATURAL SELECTION acts on this range of phenotypes the most “fit” are selected for survival and reproduction 17.2: Evolution as Genetic Change in Populations Mechanisms of Evolution (How evolution happens) 1) Natural Selection (from Darwin) 2) Mutations 3) Migration (Gene Flow) 4) Genetic Drift DEFINITIONS: ● SPECIES: group of organisms that breed with one another and produce fertile offspring. -
Gene Flow by Pollen Into Small Populations
Proc. Natl. Acad. Sci. USA Vol. 86, pp. 9044-9047, November 1989 Population Biology Gene flow by pollen into small populations: Data from experimental and natural stands of wild radish (Raphanus sativus/spatial isolation/interpopulation mating) NORMAN C. ELLSTRANDt, B. DEVLINt, AND DIANE L. MARSHALL§ Department of Botany and Plant Sciences and Program in Genetics, University of California, Riverside, CA 92521-0124 Communicated by R. W. Allard, August 14, 1989 (received for review August 18, 1988) ABSTRACT Gene flow can have an especially strong im- much from population to population, whether it varies within pact on the evolution of small populations. However, empirical a population over a season, and whether it varies with spatial studies on the actual rates and patterns of gene flow into small isolation from the nearest conspecific. More data are needed populations are few. Thus, we sought to measure gene flow into that focus more closely on a number ofpopulations ofa single small populations of wild radish, Raphanus sativus. We found species. significant differences in gene flow receipt among experimental Therefore, we selected wild radish, Raphanus sativus L. populations and within those populations over a season. A (Brassicaceae), to measure patterns of gene flow by pollen maximum-likelihood estimate revealed that almost all of the into small populations. This species is especially suitable for gene flow into these synthetic populations had its origin in both experimental and descriptive gene flow studies because relatively distant (>650 m), large natural populations rather it is a common outcrossing weed in southern California (8), than the proximal (255400 m), small synthetic populations. -
Intro Forensic Stats
Popstats Unplugged 14th International Symposium on Human Identification John V. Planz, Ph.D. UNT Health Science Center at Fort Worth Forensic Statistics From the ground up… Why so much attention to statistics? Exclusions don’t require numbers Matches do require statistics Problem of verbal expression of numbers Transfer evidence Laboratory result 1. Non-match - exclusion 2. Inconclusive- no decision 3. Match - estimate frequency Statistical Analysis Focus on the question being asked… About “Q” sample “K” matches “Q” Who else could match “Q" partial profile, mixtures Match – estimate frequency of: Match to forensic evidence NOT suspect DNA profile Who is in suspect population? So, what are we really after? Quantitative statement that expresses the rarity of the DNA profile Estimate genotype frequency 1. Frequency at each locus Hardy-Weinberg Equilibrium 2. Frequency across all loci Linkage Equilibrium Terminology Genetic marker variant = allele DNA profile = genotype Database = table that provides frequency of alleles in a population Population = some assemblage of individuals based on some criteria for inclusion Where Do We Get These Numbers? 1 in 1,000,000 1 in 110,000,000 POPULATION DATA and Statistics DNA databases are needed for placing statistical weight on DNA profiles vWA data (N=129) 14 15 16 17 18 19 20 freq 14 9 75 15 3 0 6 16 19 1 1 46 17 23 1 14 9 72 18 6 0 3 10 4 31 19 6 1 7 3 2 2 23 20 0 0 0 3 2 0 0 5 258 Because data are not available for every genotype possible, We use allele frequencies instead of genotype frequencies to estimate rarity. -
Lecture 9: Population Genetics
Lecture 9: Population Genetics Plan of the lecture I. Population Genetics: definitions II. Hardy-Weinberg Law. III. Factors affecting gene frequency in a population. Small populations and founder effect. IV. Rare Alleles and Eugenics The goal of this lecture is to make students familiar with basic models of population genetics and to acquaint students with empirical tests of these models. It will discuss the primary forces and processes involved in shaping genetic variation in natural populations (mutation, drift, selection, migration, recombination, mating patterns, population size and population subdivision). I. Population genetics: definitions Population – group of interbreeding individuals of the same species that are occupying a given area at a given time. Population genetics is the study of the allele frequency distribution and change under the influence of the 4 evolutionary forces: natural selection, mutation, migration (gene flow), and genetic drift. Population genetics is concerned with gene and genotype frequencies, the factors that tend to keep them constant, and the factors that tend to change them in populations. All the genes at all loci in every member of an interbreeding population form gene pool. Each gene in the genetic pool is present in two (or more) forms – alleles. Individuals of a population have same number and kinds of genes (except sex genes) and they have different combinations of alleles (phenotypic variation). The applications of Mendelian genetics, chromosomal abnormalities, and multifactorial inheritance to medical practice are quite evident. Physicians work mostly with patients and families. However, as important as they may be, genes affect populations, and in the long run their effects in populations have a far more important impact on medicine than the relatively few families each physician may serve. -
Patterns and Power of Phenotypic Selection in Nature
Articles Patterns and Power of Phenotypic Selection in Nature JOEL G. KINGSOLVER AND DAVID W. PFENNIG Phenotypic selection occurs when individuals with certain characteristics produce more surviving offspring than individuals with other characteristics. Although selection is regarded as the chief engine of evolutionary change, scientists have only recently begun to measure its action in the wild. These studies raise numerous questions: How strong is selection, and do different types of traits experience different patterns of selection? Is selection on traits that affect mating success as strong as selection on traits that affect survival? Does selection tend to favor larger body size, and, if so, what are its consequences? We explore these questions and discuss the pitfalls and future prospects of measuring selection in natural populations. Keywords: adaptive landscape, Cope’s rule, natural selection, rapid evolution, sexual selection henotypic selection occurs when individuals with selection on traits that affect survival stronger than on those Pdifferent characteristics (i.e., different phenotypes) that affect only mating success? In this article, we explore these differ in their survival, fecundity, or mating success. The idea and other questions about the patterns and power of phe- of phenotypic selection traces back to Darwin and Wallace notypic selection in nature. (1858), and selection is widely accepted as the primary cause of adaptive evolution within natural populations.Yet Darwin What is selection, and how does it work? never attempted to measure selection in nature, and in the Selection is the nonrandom differential survival or repro- century following the publication of On the Origin of Species duction of phenotypically different individuals.