The Influence of Geological Movements on the Population
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
The Complete Mitochondrial Genome of Trabala Vishnou Guttata (Lepidoptera: Lasiocampidae) and the Related Phylogenetic Analyses
The complete mitochondrial genome of Trabala vishnou guttata (Lepidoptera: Lasiocampidae) and the related phylogenetic analyses Liuyu Wu, Xiao Xiong, Xuming Wang, Tianrong Xin, Jing Wang, Zhiwen Zou & Bin Xia Genetica An International Journal of Genetics and Evolution ISSN 0016-6707 Volume 144 Number 6 Genetica (2016) 144:675-688 DOI 10.1007/s10709-016-9934-x 1 23 Your article is protected by copyright and all rights are held exclusively by Springer International Publishing Switzerland. This e- offprint is for personal use only and shall not be self-archived in electronic repositories. If you wish to self-archive your article, please use the accepted manuscript version for posting on your own website. You may further deposit the accepted manuscript version in any repository, provided it is only made publicly available 12 months after official publication or later and provided acknowledgement is given to the original source of publication and a link is inserted to the published article on Springer's website. The link must be accompanied by the following text: "The final publication is available at link.springer.com”. 1 23 Author's personal copy Genetica (2016) 144:675–688 DOI 10.1007/s10709-016-9934-x The complete mitochondrial genome of Trabala vishnou guttata (Lepidoptera: Lasiocampidae) and the related phylogenetic analyses 1 1 2 1 1 Liuyu Wu • Xiao Xiong • Xuming Wang • Tianrong Xin • Jing Wang • 1 1 Zhiwen Zou • Bin Xia Received: 20 May 2016 / Accepted: 17 October 2016 / Published online: 21 October 2016 Ó Springer International Publishing Switzerland 2016 Abstract The bluish yellow lappet moth, Trabala vishnou related species (Dendrolimus taxa) are clustered on Lasio- guttata is an extraordinarily important pest in China. -
Lepidoptera: Noctuoidea: Erebidae) and Its Phylogenetic Implications
EUROPEAN JOURNAL OF ENTOMOLOGYENTOMOLOGY ISSN (online): 1802-8829 Eur. J. Entomol. 113: 558–570, 2016 http://www.eje.cz doi: 10.14411/eje.2016.076 ORIGINAL ARTICLE Characterization of the complete mitochondrial genome of Spilarctia robusta (Lepidoptera: Noctuoidea: Erebidae) and its phylogenetic implications YU SUN, SEN TIAN, CEN QIAN, YU-XUAN SUN, MUHAMMAD N. ABBAS, SAIMA KAUSAR, LEI WANG, GUOQING WEI, BAO-JIAN ZHU * and CHAO-LIANG LIU * College of Life Sciences, Anhui Agricultural University, 130 Changjiang West Road, Hefei, 230036, China; e-mails: [email protected] (Y. Sun), [email protected] (S. Tian), [email protected] (C. Qian), [email protected] (Y.-X. Sun), [email protected] (M.-N. Abbas), [email protected] (S. Kausar), [email protected] (L. Wang), [email protected] (G.-Q. Wei), [email protected] (B.-J. Zhu), [email protected] (C.-L. Liu) Key words. Lepidoptera, Noctuoidea, Erebidae, Spilarctia robusta, phylogenetic analyses, mitogenome, evolution, gene rearrangement Abstract. The complete mitochondrial genome (mitogenome) of Spilarctia robusta (Lepidoptera: Noctuoidea: Erebidae) was se- quenced and analyzed. The circular mitogenome is made up of 15,447 base pairs (bp). It contains a set of 37 genes, with the gene complement and order similar to that of other lepidopterans. The 12 protein coding genes (PCGs) have a typical mitochondrial start codon (ATN codons), whereas cytochrome c oxidase subunit 1 (cox1) gene utilizes unusually the CAG codon as documented for other lepidopteran mitogenomes. Four of the 13 PCGs have incomplete termination codons, the cox1, nad4 and nad6 with a single T, but cox2 has TA. It comprises six major intergenic spacers, with the exception of the A+T-rich region, spanning at least 10 bp in the mitogenome. -
Complete Mitochondrial Genome of Golden Silk Producer Antheraea Assamensis and Its Comparative Analysis with Other Lepidopteran Insects
bioRxiv preprint doi: https://doi.org/10.1101/110031; this version posted February 20, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Complete mitochondrial genome of golden silk producer Antheraea assamensis and its comparative analysis with other lepidopteran insects Deepika Singh1,2, Debajyoti Kabiraj1, Hasnahana Chetia1, Pragya Sharma3, Kartik Neog4, Utpal Bora1,2,5* 1Bioengineering Research Laboratory, Department of Biosciences and Bioengineering, Indian Institute of Technology Guwahati, Assam-781039, India 2Centre for the Environment, Indian Institute of Technology Guwahati, Assam-781039, India 3Department of Bioengineering and Technology, Gauhati University Institute of Science and Technology (GUIST), Gauhati University, Guwahati-781014, Assam, India 4Biotechnology Section, Central Muga Eri Research & Training Institute (CMER&TI), Lahdoigarh-785700, Jorhat, Assam, India 5Mugagen Laboratories Pvt. Ltd., Technology Incubation Centre, Indian Institute of Technology Guwahati, Guwahati, Assam-781039, India *Corresponding Author Prof. Utpal Bora, Bioengineering Research Laboratory, Department of Biosciences and Bioengineering, Indian Institute of Technology Guwahati, Guwahati, Assam – 781039, India. Email: [email protected], [email protected] Phone: +913612582215/3204 1 bioRxiv preprint doi: https://doi.org/10.1101/110031; this version posted February 20, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Abstract Muga (Antheraea assamensis) is an economically important silkmoth endemic to North-eastern part of India and is the producer of the strongest known commercial silk. However, there is a scarcity of -omics data for understanding the organism at a molecular level. -
Mitochondrial Genomes of Two Bombycoidea Insects and Implications for Their Phylogeny
www.nature.com/scientificreports OPEN Mitochondrial Genomes of Two Bombycoidea Insects and Implications for Their Phylogeny Received: 20 February 2017 Zhao-Zhe Xin, Yu Liu, Xiao-Yu Zhu, Ying Wang, Hua-Bin Zhang, Dai-Zhen Zhang, Chun-Lin Accepted: 22 June 2017 Zhou, Bo-Ping Tang & Qiu-Ning Liu Published online: 26 July 2017 The mitochondrial genome (mt genome) provides important information for understanding molecular evolution and phylogenetics. As such, the two complete mt genomes of Ampelophaga rubiginosa and Rondotia menciana were sequenced and annotated. The two circular genomes of A. rubiginosa and R. menciana are 15,282 and 15,636 bp long, respectively, including 13 protein-coding genes (PCGs), two rRNA genes, 22 tRNA genes and an A + T-rich region. The nucleotide composition of the A. rubiginosa mt genome is A + T rich (81.5%) but is lower than that of R. menciana (82.2%). The AT skew is slightly positive and the GC skew is negative in these two mt genomes. Except for cox1, which started with CGA, all other 12PCGs started with ATN codons. The A + T-rich regions of A. rubiginosa and R. menciana were 399 bp and 604 bp long and consist of several features common to Bombycoidea insects. The order and orientation of A. rubiginosa and R. menciana mitogenomes with the order trnM-trnI-trnQ-nad2 is diferent from the ancestral insects in which trnM is located between trnQ and nad2 (trnI-trnQ-trnM- nad2). Phylogenetic analyses indicate that A. rubiginosa belongs in the Sphingidae family, and R. menciana belongs in the Bombycidae family. -
EU Project Number 613678
EU project number 613678 Strategies to develop effective, innovative and practical approaches to protect major European fruit crops from pests and pathogens Work package 1. Pathways of introduction of fruit pests and pathogens Deliverable 1.3. PART 7 - REPORT on Oranges and Mandarins – Fruit pathway and Alert List Partners involved: EPPO (Grousset F, Petter F, Suffert M) and JKI (Steffen K, Wilstermann A, Schrader G). This document should be cited as ‘Grousset F, Wistermann A, Steffen K, Petter F, Schrader G, Suffert M (2016) DROPSA Deliverable 1.3 Report for Oranges and Mandarins – Fruit pathway and Alert List’. An Excel file containing supporting information is available at https://upload.eppo.int/download/112o3f5b0c014 DROPSA is funded by the European Union’s Seventh Framework Programme for research, technological development and demonstration (grant agreement no. 613678). www.dropsaproject.eu [email protected] DROPSA DELIVERABLE REPORT on ORANGES AND MANDARINS – Fruit pathway and Alert List 1. Introduction ............................................................................................................................................... 2 1.1 Background on oranges and mandarins ..................................................................................................... 2 1.2 Data on production and trade of orange and mandarin fruit ........................................................................ 5 1.3 Characteristics of the pathway ‘orange and mandarin fruit’ ....................................................................... -
Lepidoptera, Geometridae, Ennominae) from China
A peer-reviewed open-access journal ZooKeys 139:A review 45–96 (2011)of Biston Leach, 1815 (Lepidoptera, Geometridae, Ennominae) from China... 45 doi: 10.3897/zookeys.139.1308 RESEARCH ARTICLE www.zookeys.org Launched to accelerate biodiversity research A review of Biston Leach, 1815 (Lepidoptera, Geometridae, Ennominae) from China, with description of one new species Nan Jiang1,2,†, Dayong Xue1,‡, Hongxiang Han1,§ 1 Key Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, China 2 Graduate University of Chinese Academy of Sciences, Beijing 100049, China † urn:lsid:zoobank.org:author:F09E9F50-5E54-40FE-8C04-3CEA6565446B ‡ urn:lsid:zoobank.org:author:BBEC2B15-1EEE-40C4-90B0-EB6B116F2AED § urn:lsid:zoobank.org:author:1162241D-772E-4668-BAA3-F7E0AFBE21EE Corresponding author: Hongxiang Han ([email protected]) Academic editor: A.Hausmann | Received 26 March 2011 | Accepted 15 August 2011 | Published 25 October 2011 urn:lsid:zoobank.org:pub:F505D74E-1098-473D-B7DE-0ED283297B4F Citation: Jiang N, Xue D, Han H (2011) A review of Biston Leach, 1815 (Lepidoptera, Geometridae, Ennominae) from China, with description of one new species. ZooKeys 139: 45–96. doi: 10.3897/zookeys.139.1308 Abstract The genus Biston Leach, 1815 is reviewed for China. Seventeen species are recognized, of which B. me- diolata sp. n. is described. B. pustulata (Warren, 1896) and B. panterinaria exanthemata (Moore, 1888) are newly recorded for China. The following new synonyms are established: B. suppressaria suppressaria (Guenée, 1858) (= B. suppressaria benescripta (Prout, 1915), syn. n. = B. luculentus Inoue, 1992 syn. n.); B. falcata (Warren, 1893) (= Amphidasis erilda Oberthür, 1910, syn. -
This Article Appeared in a Journal Published by Elsevier. the Attached
This article appeared in a journal published by Elsevier. The attached copy is furnished to the author for internal non-commercial research and education use, including for instruction at the authors institution and sharing with colleagues. Other uses, including reproduction and distribution, or selling or licensing copies, or posting to personal, institutional or third party websites are prohibited. In most cases authors are permitted to post their version of the article (e.g. in Word or Tex form) to their personal website or institutional repository. Authors requiring further information regarding Elsevier’s archiving and manuscript policies are encouraged to visit: http://www.elsevier.com/copyright Author's personal copy Gene 515 (2013) 349–358 Contents lists available at SciVerse ScienceDirect Gene journal homepage: www.elsevier.com/locate/gene The complete mitochondrial genome of Biston panterinaria (Lepidoptera: Geometridae), with phylogenetic utility of mitochondrial genome in the Lepidoptera Xiushuai Yang a,b, Dayong Xue a, Hongxiang Han a,⁎ a Key Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, China b Graduate University of the Chinese Academy of Sciences, Beijing 100049, China article info abstract Article history: The complete mitochondrial genome (mitogenome) of the Chinese pistacia looper Biston panterinaria was Accepted 1 November 2012 sequenced and annotated (15,517 bp). It contains the typical 37 genes of animal mitogenomes and a high Available online 5 December 2012 A+T content (79.5%). All protein coding genes (PCGs) use standard ATN initiation codons except for cytochrome c oxidase 1 (COX1) with CGA. Eleven PCGs use a common stop codon of TAA or TAG, whereas COX2 and NADH Keywords: dehydrogenase 4 (ND4) use a single T. -
A Molecular Phylogeny of the Palaearctic and O.Pdf
CSIRO PUBLISHING Invertebrate Systematics, 2017, 31, 427–441 http://dx.doi.org/10.1071/IS17005 A molecular phylogeny of the Palaearctic and Oriental members of the tribe Boarmiini (Lepidoptera : Geometridae : Ennominae) Nan Jiang A,D, Xinxin Li A,B,D, Axel Hausmann C, Rui Cheng A, Dayong Xue A and Hongxiang Han A,E AKey Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, No. 1 Beichen West Road, Chaoyang District, Beijing 100101, China. BUniversity of Chinese Academy of Sciences, 19A Yuquan Road, Shijingshan District, Beijing 100049 China. CSNSB – Zoologische Staatssammlung München, Münchhausenstraße 21, Munich 81247, Germany. DThese authors contributed equally to this work. ECorresponding author. Email: [email protected] Abstract. Owing to the high species diversity and the lack of a modern revision, the phylogenetic relationships within the tribe Boarmiini remain largely unexplored. In this study, we reconstruct the first molecular phylogeny of the Palaearctic and Oriental members of Boarmiini, and infer the relationships among tribes within the ‘boarmiine’ lineage. One mitochondrial (COI) and four nuclear (EF-1a, CAD, RpS5, GAPDH) genes for 56 genera and 96 species of Boarmiini mostly from the Palaearctic and Oriental regions were included in the study. Analyses of Bayesian inference and maximum likelihood recovered largely congruent results. The monophyly of Boarmiini is supported by our results. Seven clades and seven subclades within Boarmiini were found. The molecular results coupled with morphological studies suggested the synonymisation of Zanclopera Warren, 1894, syn. nov. with Krananda Moore, 1868. The following new combinations are proposed: Krananda straminearia (Leech, 1897) (comb. nov.), Krananda falcata (Warren, 1894) (comb. -
The Complete Mitochondrial Genome of Biston Panterinaria (Lepidoptera: Geometridae), with Phylogenetic Utility of Mitochondrial Genome in the Lepidoptera
Gene 515 (2013) 349–358 Contents lists available at SciVerse ScienceDirect Gene journal homepage: www.elsevier.com/locate/gene The complete mitochondrial genome of Biston panterinaria (Lepidoptera: Geometridae), with phylogenetic utility of mitochondrial genome in the Lepidoptera Xiushuai Yang a,b, Dayong Xue a, Hongxiang Han a,⁎ a Key Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, China b Graduate University of the Chinese Academy of Sciences, Beijing 100049, China article info abstract Article history: The complete mitochondrial genome (mitogenome) of the Chinese pistacia looper Biston panterinaria was Accepted 1 November 2012 sequenced and annotated (15,517 bp). It contains the typical 37 genes of animal mitogenomes and a high Available online 5 December 2012 A+T content (79.5%). All protein coding genes (PCGs) use standard ATN initiation codons except for cytochrome c oxidase 1 (COX1) with CGA. Eleven PCGs use a common stop codon of TAA or TAG, whereas COX2 and NADH Keywords: dehydrogenase 4 (ND4) use a single T. All transfer RNA (tRNA) genes have the typical clover-leaf structure with Mitochondrial genome the exception of tRNASer(AGN). We reconstructed a preliminary mitochondrial phylogeny of six ditrysian super- Biston panterinaria Molecular phylogeny families and performed comparative analyses of inference methods (Bayesian Inference (BI), Maximum Likeli- hood (ML), and Maximum Parsimony (MP)), dataset compositions (including and excluding 3rd codon positions), and alignment methods (Muscle, Clustal W, and MAFFT). Our analyses indicated that inference methods and dataset compositions more significantly affected the phylogenetic results than alignment methods. BI analysis consistently revealed uncontroversial relationships with all dataset compositions. -
FOLIA ENTOMOLOGICA HUNGARICA ROVARTANI KÖZLEMÉNYEK Volume 72 2011 Pp
FOLIA ENTOMOLOGICA HUNGARICA ROVARTANI KÖZLEMÉNYEK Volume 72 2011 pp. 79−107 Data of Geometridae (Lepidoptera) from the Korean Peninsula in the collections of the Hungarian Natural History Museum subfamilies Ennominae and Geometrinae* ZS. BÁLINT & G. KATONA Department of Zoology, Hungarian Natural History Museum, H-1088 Budapest, Baross utca 13, Hungary. E-mails: [email protected], [email protected] Data of 180 species of the geometrid subfamilies Ennominae and Geometrinae (148 and 32 taxa, respectively) are presented. Almost four decades of entomological explo- ration by the Hungarian Natural History Museum in the Korean Peninsula yielded the 3980 specimens discussed here, with a full list of the 230 relevant collecting events. Of the 180 species recorded 53 (~ 30%) turned to be new for the fauna of the northern part of the Korean Peninsula, including Selenia dentaria (FABRICIUS, 1775) (from Samjiyon, Prov. Ry- anggang) as new to the fauna of entire Korea. A key to the species of Selenia HÜBNER, 1823 is given. With 6 figures. – Geometridae, Geometrinae, Ennominae, faunistics, new records, Korean Peninsula, Selenia dentaria. INTRODUCTION The cooperation of Korean and Hungarian biologists started more than four decades ago. Initially it meant faunistic investigations in the Ko- rean Peninsula financed by the Hungarian Academy of Sciences. A long series of expeditions were carried out in the course of the first 27 years. The number of collecting events exceeded 1880 and a large amount of arthropods were pre- served in the collections of the Hungarian Natural History Museum (HNHM). * Zoological Collectings by the Hungarian Natural History Museum in Korea No. 199 Folia ent. -
Review Article Coleopteran and Lepidopteran Hosts of the Entomopathogenic Genus Cordyceps Sensu Lato
Hindawi Publishing Corporation Journal of Mycology Volume 2016, Article ID 7648219, 14 pages http://dx.doi.org/10.1155/2016/7648219 Review Article Coleopteran and Lepidopteran Hosts of the Entomopathogenic Genus Cordyceps sensu lato Bhushan Shrestha,1 Eiji Tanaka,2 Min Woo Hyun,3 Jae-Gu Han,3 Chang Sun Kim,4 Jong Won Jo,4 Sang-Kuk Han,4 Junsang Oh,5 and Gi-Ho Sung1 1 Institute for Bio-Medical Convergence, International St. Mary’s Hospital and College of Medicine, Catholic Kwandong University, Incheon 404-834, Republic of Korea 2Environmental Science, Ishikawa Prefectural University, 1-308 Suematsu, Nonoichi, Ishikawa 921-8836, Japan 3Mushroom Research Division, National Institute of Horticultural and Herbal Science, Rural Development Administration, Eumseong 369-873, Republic of Korea 4Forest Biodiversity Division, Korea National Arboretum, Pocheon 487-820, Republic of Korea 5College of Pharmacy, Chung-Ang University, Seoul 156-756, Republic of Korea Correspondence should be addressed to Gi-Ho Sung; [email protected] Received 13 December 2015; Accepted 19 January 2016 Academic Editor: Dagmar Triebel Copyright © 2016 Bhushan Shrestha et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Entomophthoralean and ascomycetous fungi are the two major groups known to parasitize arthropods in almost every terrestrial habitat of the earth. Within Ascomycota, Cordyceps sensu lato is a large genus with more than 400 spp. described on numerous orders of Arthropoda. Among the hosts of Cordyceps, Coleoptera and Lepidoptera are the two major orders. -
Doi Done 2017-04-07.Fm
See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/316316844 Mitochondrial genome of Abraxas suspecta (Lepidoptera: Geometridae) and comparative analysis with other Lepidopterans Article in Zootaxa · April 2017 DOI: 10.11646/zootaxa.4254.5.1 CITATIONS READS 7 192 10 authors, including: Yu Sun Muhammad Nadeem Abbas Bengbu Medical College Southwest University in Chongqing 47 PUBLICATIONS 356 CITATIONS 93 PUBLICATIONS 814 CITATIONS SEE PROFILE SEE PROFILE Cen Qian Guoqing Wei Anhui Agricultural University (AHAU) 54 PUBLICATIONS 437 CITATIONS 123 PUBLICATIONS 1,388 CITATIONS SEE PROFILE SEE PROFILE Some of the authors of this publication are also working on these related projects: microbiolgy View project Silkworm/Mulberry/Silk and Health View project All content following this page was uploaded by Yu Sun on 30 March 2018. The user has requested enhancement of the downloaded file. Zootaxa 0000 (0): 000–000 ISSN 1175-5326 (print edition) http://www.mapress.com/j/zt/ Article ZOOTAXA Copyright © 2017 Magnolia Press ISSN 1175-5334 (online edition) https://doi.org/10.11646/zootaxa.0000.0.0 http://zoobank.org/urn:lsid:zoobank.org:pub:00000000-0000-0000-0000-00000000000 Mitochondrial genome of Abraxas suspecta (Lepidoptera: Geometridae) and comparative analysis with other Lepidopterans YU SUN1, JIAWEI ZHANG1, QINGQING LI1, DAN LIANG1, MUHAMMAD NADEEM ABBAS1, CEN QIAN1, LEI WANG1, GUOQING WEI1, BAO-JIAN ZHU1,2 & CHAO-LIANG LIU1,2 1College of Life Sciences, Anhui Agricultural University, Hefei, 230036, China 2Corresponding authors. E-mail: [email protected] (B.-J. Zhu); [email protected] (C.-L. Liu) Abstract In this study, a complete mitochondrial genome (mitogenome) sequence of Abraxas suspecta (Lepidoptera: Geometridae) is isolated and characterized.