A TEACHING TOOL: a KEY to SELECTED FAGACEAE Includes Passing a Plant Identification Exam of Common Landscape Plants
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Oaks (Quercus Spp.): a Brief History
Publication WSFNR-20-25A April 2020 Oaks (Quercus spp.): A Brief History Dr. Kim D. Coder, Professor of Tree Biology & Health Care / University Hill Fellow University of Georgia Warnell School of Forestry & Natural Resources Quercus (oak) is the largest tree genus in temperate and sub-tropical areas of the Northern Hemisphere with an extensive distribution. (Denk et.al. 2010) Oaks are the most dominant trees of North America both in species number and biomass. (Hipp et.al. 2018) The three North America oak groups (white, red / black, and golden-cup) represent roughly 60% (~255) of the ~435 species within the Quercus genus worldwide. (Hipp et.al. 2018; McVay et.al. 2017a) Oak group development over time helped determine current species, and can suggest relationships which foster hybridization. The red / black and white oaks developed during a warm phase in global climate at high latitudes in what today is the boreal forest zone. From this northern location, both oak groups spread together southward across the continent splitting into a large eastern United States pathway, and much smaller western and far western paths. Both species groups spread into the eastern United States, then southward, and continued into Mexico and Central America as far as Columbia. (Hipp et.al. 2018) Today, Mexico is considered the world center of oak diversity. (Hipp et.al. 2018) Figure 1 shows genus, sub-genus and sections of Quercus (oak). History of Oak Species Groups Oaks developed under much different climates and environments than today. By examining how oaks developed and diversified into small, closely related groups, the native set of Georgia oak species can be better appreciated and understood in how they are related, share gene sets, or hybridize. -
ESJ67 Program Web.Pdf
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Wild Crop Relatives: Genomic and Breeding Resources: Forest Trees
Wild Crop Relatives: Genomic and Breeding Resources . Chittaranjan Kole Editor Wild Crop Relatives: Genomic and Breeding Resources Forest Trees Editor Prof. Chittaranjan Kole Director of Research Institute of Nutraceutical Research Clemson University 109 Jordan Hall Clemson, SC 29634 [email protected] ISBN 978-3-642-21249-9 e-ISBN 978-3-642-21250-5 DOI 10.1007/978-3-642-21250-5 Springer Heidelberg Dordrecht London New York Library of Congress Control Number: 2011922649 # Springer-Verlag Berlin Heidelberg 2011 This work is subject to copyright. All rights are reserved, whether the whole or part of the material is concerned, specifically the rights of translation, reprinting, reuse of illustrations, recitation, broadcasting, reproduction on microfilm or in any other way, and storage in data banks. Duplication of this publication or parts thereof is permitted only under the provisions of the German Copyright Law of September 9, 1965, in its current version, and permission for use must always be obtained from Springer. Violations are liable to prosecution under the German Copyright Law. The use of general descriptive names, registered names, trademarks, etc. in this publication does not imply, even in the absence of a specific statement, that such names are exempt from the relevant protective laws and regulations and therefore free for general use. Cover design: deblik, Berlin Printed on acid-free paper Springer is part of Springer Science+Business Media (www.springer.com) Dedication Dr. Norman Ernest Borlaug,1 the Father of Green Revolution, is well respected for his contribu- tions to science and society. There was or is not and never will be a single person on this Earth whose single-handed service to science could save millions of people from death due to starvation over a period of over four decades like Dr. -
82864099.Pdf
ORIGINAL RESEARCH published: 21 February 2017 doi: 10.3389/fpls.2017.00229 Introgression Threatens the Genetic Diversity of Quercus austrocochinchinensis (Fagaceae), an Endangered Oak: A Case Inferred by Molecular Markers Miao An 1, 2, Min Deng 1, 2*, Si-Si Zheng 1, 2, Xiao-Long Jiang 1, 2 and Yi-Gang Song 1, 2 1 Shanghai Key Laboratory of Plant Functional Genomics and Resources, Shanghai Chenshan Botanical Garden, Shanghai, China, 2 Shanghai Chenshan Plant Science Research Center, Chinese Academy of Sciences, Shanghai, China Natural introgression can cause negative effects where rare species experience genetic assimilation and invade by their abundant congeners. Quercus austrocochinchinensis and Q. kerrii (subgenus Cyclobalanopsis) are a pair of closely related species in the Edited by: Indo-China area. Morphological intermediates of the two species have been reported Scott V. Edwards, in this region. In this study, we used AFLP, SSR and two key leaf morphological Harvard University, USA diagnostic traits to study the two Q. austrocochinchinensis populations, two pure Reviewed by: Octavio Salgueiro Paulo, Q. kerrii and two putative hybrid populations in China. Rates of individual admixture Universidade de Lisboa, Portugal were examined using the Bayesian clustering programs STRUCTURE and NewHybrids, Yongpeng Ma, Kunming Institute of Botany (CAS), with no a priori species assignment. In total, we obtained 151 SSR alleles and China 781 polymorphic loci of AFLP markers. Population differentiation inferred by SSR *Correspondence: and AFLP was incoherent with recognized species boundaries. Bayesian admixture Min Deng analyses and principal coordinate analysis identified more hybrids and backcrossed [email protected] individuals than morphological intermediates in the populations. -
Quercus Cerris L.) Populations
PATTERN OF GENETIC DIVERSITY IN TURKEY OAK (QUERCUS CERRIS L.) POPULATIONS A THESIS SUBMITTED TO THE GRADUATE SCHOOL OF NATURAL AND APPLIED SCIENCES OF MIDDLE EAST TECHNICAL UNIVERSITY BY YELĠZ TÜMBĠLEN ÖZER IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY IN BIOLOGY JULY 2014 Approval of the Thesis PATTERN OF GENETIC DIVERSITY IN TURKEY OAK (QUERCUS CERRIS L.) POPULATIONS submitted by YELİZ TÜMBİLEN ÖZERin partial fulfillment of the requirements for the degree of Doctor of Philosophy in Biology Department, Middle East Technical University by, Prof. Dr. Canan Özgen _______________ Dean, Graduate School of Natural and Applied Sciences Prof. Dr. Orhan Adalı _______________ Head of the Department, Biology Prof. Dr. Zeki Kaya _______________ Supervisor, Biology Dept., METU Examining Committee Members: Prof. Dr. Musa Doğan _______________ Biology Dept., METU Prof.Dr. Zeki Kaya _______________ Biology Dept., METU Prof. Dr. Hayri Duman _______________ Biology Dept., Gazi University Assoc. Prof. Dr. Sertaç Önde _______________ Biology Dept., METU Assist. Prof. Dr. AyĢegül Birand _______________ Biology Dept., METU Date: 03.07.2014 iii I hereby declare that all information in this document has been obtained and presented in accordance with academic rules and ethical conduct. I also declare that, as required by these rules and conduct, I have fully cited and referenced all material and results that are not original to this work. Name, Last name : Yeliz TÜMBĠLEN ÖZER Signature: iv ABSTRACT PATTERN OF GENETIC DIVERSITY IN TURKEY OAK (QUERCUS CERRIS L.) POPULATIONS TÜMBĠLEN ÖZER, Yeliz Ph D., Department of Biology Supervisor: Prof. Dr. Zeki KAYA July 2014, 119 pages Quercus cerris L. -
In Situ Dark Adaptation Enhances the Efficiency of DNA Extraction
Article In Situ Dark Adaptation Enhances the Efficiency of DNA Extraction from Mature Pin Oak (Quercus palustris) Leaves, Facilitating the Identification of Partial Sequences of the 18S rRNA and Isoprene Synthase (IspS) Genes Csengele E. Barta *, Bethany Bolander, Steven R. Bilby, Jeremy H. Brown, Reid N. Brown, Alexander M. Duryee, Danielle R. Edelman, Christina E. Gray, Chandler Gossett, Amie G. Haddock, Mackenzie M. Helsel, Alyssa D. Jones, Marissa E. Klingseis, Kalif Leslie, Edward W. Miles and Rachael A. Prawitz Department of Biology, Missouri Western State University, 4525 Downs Drive, Agenstein-Remington Halls, St. Joseph, MO 64507, USA; [email protected] (B.B.); [email protected] (S.R.B.); [email protected] (J.H.B.); [email protected] (R.N.B.); [email protected] (A.M.D.); [email protected] (D.R.E.); [email protected] (C.E.G.); [email protected] (C.G.); [email protected] (A.G.H.); [email protected] (M.M.H.); [email protected] (A.D.J.); [email protected] (M.E.K.); [email protected] (K.L.); [email protected] (E.W.M.); [email protected] (R.A.P.) * Correspondence: [email protected]; Tel.: +1-816-271-4334 Received: 28 August 2017; Accepted: 19 October 2017; Published: 24 October 2017 Abstract: Mature oak (Quercus spp.) leaves, although abundantly available during the plants’ developmental cycle, are rarely exploited as viable sources of genomic DNA. These leaves are rich in metabolites difficult to remove during standard DNA purification, interfering with downstream molecular genetics applications. The current work assessed whether in situ dark adaptation, to deplete sugar reserves and inhibit secondary metabolite synthesis could compensate for the difficulties encountered when isolating DNA from mature leaves rich in secondary metabolites. -
FAGACEAE 1. FAGUS Linnaeus, Sp. Pl. 2: 997. 1753
Flora of China 4: 314–400. 1999. 1 FAGACEAE 壳斗科 qiao dou ke Huang Chengjiu (黄成就 Huang Ching-chieu)1, Zhang Yongtian (张永田 Chang Yong-tian)2; Bruce Bartholomew3 Trees or rarely shrubs, monoecions, evergreen or deciduous. Stipules usually early deciduous. Leaves alternate, sometimes false-whorled in Cyclobalanopsis. Inflorescences unisexual or androgynous with female cupules at the base of an otherwise male inflorescence. Male inflorescences a pendulous head or erect or pendulous catkin, sometimes branched; flowers in dense cymules. Male flower: sepals 4–6(–9), scalelike, connate or distinct; petals absent; filaments filiform; anthers dorsifixed or versatile, opening by longitudinal slits; with or without a rudimentary pistil. Female inflorescences of 1–7 or more flowers subtended individually or collectively by a cupule formed from numerous fused bracts, arranged individually or in small groups along an axis or at base of an androgynous inflorescence or on a separate axis. Female flower: perianth 1–7 or more; pistil 1; ovary inferior, 3–6(– 9)-loculed; style and carpels as many as locules; placentation axile; ovules 2 per locule. Fruit a nut. Seed usually solitary by abortion (but may be more than 1 in Castanea, Castanopsis, Fagus, and Formanodendron), without endosperm; embryo large. Seven to 12 genera (depending on interpretation) and 900–1000 species: worldwide except for tropical and S Africa; seven genera and 294 species (163 endemic, at least three introduced) in China. Many species are important timber trees. Nuts of Fagus, Castanea, and of most Castanopsis species are edible, and oil is extracted from nuts of Fagus. Nuts of most species of this family contain copious amounts of water soluble tannin. -
Palaeogeography, Palaeoclimatology, Palaeoecology 442 (2016) 61–71
Palaeogeography, Palaeoclimatology, Palaeoecology 442 (2016) 61–71 Contents lists available at ScienceDirect Palaeogeography, Palaeoclimatology, Palaeoecology journal homepage: www.elsevier.com/locate/palaeo The first fossil record of ring-cupped oak (Quercus L. subgenus Cyclobalanopsis (Oersted) Schneider) in Tibet and its paleoenvironmental implications He Xu a,c,TaoSua,d,⁎, Shi-Tao Zhang e, Min Deng f, Zhe-Kun Zhou a,b,⁎ a Key Laboratory of Tropical Forest Ecology, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Mengla 666303, China b Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650204, China c University of Chinese Academy of Sciences, Beijing 100049, China d State Key Laboratory of Paleobiology and Stratigraphy, Nanjing Institute of Geology and Paleontology, Chinese Academy of Sciences, Nanjing 210008,China e Faculty of Land Resource Engineering, Kunming University of Science and Technology, Kunming 650093, China f Shanghai Chengshan Plant Science Research Center, Chinese Academy of Sciences, Shanghai 201602, China article info abstract Article history: Some taxa are good indicators of particular climates because their distribution is determined by specific temper- Received 1 March 2015 ature or precipitation requirements. Ring-cupped oaks (Quercus L. subgenus Cyclobalanopsis (Oersted) Received in revised form 13 November 2015 Schneider) are mainly distributed in tropical and subtropical climates in southeastern and eastern Asia. Recently, Accepted 17 November 2015 we collected many leaf fossils of ring-cupped oaks from the Upper Miocene Lawula Formation of eastern Tibet at Available online 02 December 2015 an elevation of 3910 m. No modern species of ring-cupped oaks could survive at such a high elevation under cur- rent climate conditions. -
Taxonomy and Systematics of Quercus Subgenus Cyclobalanopsis
Figure 4/ Strict consensus tree of 600 MP cladograms from ITS (CI = 0.545; RI = 0.803). Bootstrap proportions using MP are indicated above branches (discussion, p. 55). 48 Taxonomy and Systematics of Quercus Subgenus Cyclobalanopsis Min Deng1, Zhekun Zhou2*, Qiansheng Li3 2. Xishuangbanna Tropical Botanical Garden, 3. School of Ecology, the Chinese Academy of Sciences, Shanghai Institute of Technology, Kunming, 650223, China. 100 Haiquan Rd., Shanghai, 201418, China 1. Chenshan Plant Sciences Research Center, the Chinese Academy of Sciences, Chenshan Botanical Garden, 3888 ChenHua Rd., Shanghai, 201602, China. Phone: +86-21- 57 79 93 82; Fax: + 86-21-67657811. [email protected]; ABSTRACT Quercus subgenus Cyclobalanopsis is one of the dominant woody plant groups in E and SE Asia, but comprehensive studies on its systematics and taxonomy are limited. In this study, we compared the leaf epidermal and acorn features of 52 species in subgenus Cyclobalanopsis and 15 species from Quercus subgenus Quercus. We also studied molecular phylogeny using DNA sequences from the nuclear ribosomal internal transcribed spacer (ITS) region and the chloroplast psbA–trnH and trnT–trnL regions. Both the leaf epidermal and acorn features indicated ʏve morphologically distinct groups in Cyclobalanopsis: 1) Gilva group (fused stellate trichomes with compound trichome base); 2) Kerrii group (with fasciculate trichomes, and radicles emerging from the basal seed scar; 3) Pachyloma group (papillae on epidermal cells, but glabrous when mature and densely yellowish woolly on the cupule walls); 4) Jenseniana group (lamellae mostly fused to the cupule wall with only the rims free); 5) Glauca group (appressed-lateral-attached trichomes). -
Supplementary Material
Xiang et al., Page S1 Supporting Information Fig. S1. Examples of the diversity of diaspore shapes in Fagales. Fig. S2. Cladogram of Fagales obtained from the 5-marker data set. Fig. S3. Chronogram of Fagales obtained from analysis of the 5-marker data set in BEAST. Fig. S4. Time scale of major fagalean divergence events during the past 105 Ma. Fig. S5. Confidence intervals of expected clade diversity (log scale) according to age of stem group. Fig. S6. Evolution of diaspores types in Fagales with BiSSE model. Fig. S7. Evolution of diaspores types in Fagales with Mk1 model. Fig. S8. Evolution of dispersal modes in Fagales with MuSSE model. Fig. S9. Evolution of dispersal modes in Fagales with Mk1 model. Fig. S10. Reconstruction of pollination syndromes in Fagales with BiSSE model. Fig. S11. Reconstruction of pollination syndromes in Fagales with Mk1 model. Fig. S12. Reconstruction of habitat shifts in Fagales with MuSSE model. Fig. S13. Reconstruction of habitat shifts in Fagales with Mk1 model. Fig. S14. Stratigraphy of fossil fagalean genera. Table S1 Genera of Fagales indicating the number of recognized and sampled species, nut sizes, habits, pollination modes, and geographic distributions. Table S2 List of taxa included in this study, sources of plant material, and GenBank accession numbers. Table S3 Primers used for amplification and sequencing in this study. Table S4 Fossil age constraints utilized in this study of Fagales diversification. Table S5 Fossil fruits reviewed in this study. Xiang et al., Page S2 Table S6 Statistics from the analyses of the various data sets. Table S7 Estimated ages for all families and genera of Fagales using BEAST. -
An Approach from Phylogenetic and Functional Signals in Beneficial Attributes of Tree Species
Multifaceted ecosystem services provided by tree communities: an approach from phylogenetic and functional signals in beneficial attributes of tree species 著者 Oka Chihiro 学位授与機関 Tohoku University 学位授与番号 11301甲第18786号 URL http://hdl.handle.net/10097/00125750 博 士 論 文 Multifaceted ecosystem services provided by tree communities: an approach from phylogenetic and functional signals in beneficial attributes of tree species (樹木群集による多面的生態系サービス供給: 樹種の有用性にみられる系統的・機能的シグナルに基づくアプローチ) 平成30年度 東北大学大学院生命科学研究科 生態システム生命科学専攻 岡 千尋 Table of Contents Abstract…………………………………………………………………………………………...2 Chapter 1. General introduction………………………………………………………………….5 Chapter 2. Phylogenetic clustering in beneficial attributes of tree species directly linked to provisioning, regulating and cultural ecosystem services……………………………………….12 Chapter 3. Linking functional traits to ecosystem services: quantification of important traits for provisioning, regulating, and cultural benefits of tree species…………………………………..38 Chapter 4. Importance of species identity and community composition for ecosystem services of tree communities…………………………………………………………………………………54 Chapter 5. General discussion…………………………………………………………………..70 Acknowledgements……………………………………………………………………………..74 Supplementary information……………………………………………………………………75 1 Abstract Organisms and the communities play essential roles for ecosystem functions and services (i.e., human benefits from ecosystems). Effects of organisms and the communities on ecosystem functions/services are mediated by functional traits of organisms. Functional -
Identifying and Naming the Currently Known Diversity of the Genus Hydnum, with an Emphasis on European and North American Taxa
Mycologia ISSN: 0027-5514 (Print) 1557-2536 (Online) Journal homepage: http://www.tandfonline.com/loi/umyc20 Identifying and naming the currently known diversity of the genus Hydnum, with an emphasis on European and North American taxa Tuula Niskanen, Kare Liimatainen, Jorinde Nuytinck, Paul Kirk, Ibai Olariaga Ibarguren, Roberto Garibay-Orijel, Lorelei Norvell, Seppo Huhtinen, Ilkka Kytövuori, Juhani Ruotsalainen, Tuomo Niemelä, Joseph F. Ammirati & Leho Tedersoo To cite this article: Tuula Niskanen, Kare Liimatainen, Jorinde Nuytinck, Paul Kirk, Ibai Olariaga Ibarguren, Roberto Garibay-Orijel, Lorelei Norvell, Seppo Huhtinen, Ilkka Kytövuori, Juhani Ruotsalainen, Tuomo Niemelä, Joseph F. Ammirati & Leho Tedersoo (2018) Identifying and naming the currently known diversity of the genus Hydnum, with an emphasis on European and North American taxa, Mycologia, 110:5, 890-918, DOI: 10.1080/00275514.2018.1477004 To link to this article: https://doi.org/10.1080/00275514.2018.1477004 Accepted author version posted online: 22 May 2018. Published online: 14 Sep 2018. Submit your article to this journal Article views: 527 View Crossmark data Full Terms & Conditions of access and use can be found at http://www.tandfonline.com/action/journalInformation?journalCode=umyc20 MYCOLOGIA 2018, VOL. 110, NO. 5, 890–918 https://doi.org/10.1080/00275514.2018.1477004 Identifying and naming the currently known diversity of the genus Hydnum, with an emphasis on European and North American taxa Tuula Niskanen a, Kare Liimatainen a,b, Jorinde Nuytinck c, Paul Kirka, Ibai Olariaga Ibarguren d, Roberto Garibay-Orijel e, Lorelei Norvell f, Seppo Huhtineng, Ilkka Kytövuorih, Juhani Ruotsalainen†, Tuomo Niemelä h, Joseph F. Ammiratii, and Leho Tedersoo j aJodrell Laboratory, Royal Botanic Gardens, Kew, Surrey TW9 3AB, United Kingdom; bDepartment of Biosciences, Plant Biology, P.O.