ORIGINAL RESEARCH published: 21 February 2017 doi: 10.3389/fpls.2017.00229 Introgression Threatens the Genetic Diversity of Quercus austrocochinchinensis (Fagaceae), an Endangered Oak: A Case Inferred by Molecular Markers Miao An 1, 2, Min Deng 1, 2*, Si-Si Zheng 1, 2, Xiao-Long Jiang 1, 2 and Yi-Gang Song 1, 2 1 Shanghai Key Laboratory of Plant Functional Genomics and Resources, Shanghai Chenshan Botanical Garden, Shanghai, China, 2 Shanghai Chenshan Plant Science Research Center, Chinese Academy of Sciences, Shanghai, China Natural introgression can cause negative effects where rare species experience genetic assimilation and invade by their abundant congeners. Quercus austrocochinchinensis and Q. kerrii (subgenus Cyclobalanopsis) are a pair of closely related species in the Edited by: Indo-China area. Morphological intermediates of the two species have been reported Scott V. Edwards, in this region. In this study, we used AFLP, SSR and two key leaf morphological Harvard University, USA diagnostic traits to study the two Q. austrocochinchinensis populations, two pure Reviewed by: Octavio Salgueiro Paulo, Q. kerrii and two putative hybrid populations in China. Rates of individual admixture Universidade de Lisboa, Portugal were examined using the Bayesian clustering programs STRUCTURE and NewHybrids, Yongpeng Ma, Kunming Institute of Botany (CAS), with no a priori species assignment. In total, we obtained 151 SSR alleles and China 781 polymorphic loci of AFLP markers. Population differentiation inferred by SSR *Correspondence: and AFLP was incoherent with recognized species boundaries. Bayesian admixture Min Deng analyses and principal coordinate analysis identified more hybrids and backcrossed
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