Wild Crop Relatives: Genomic and Breeding Resources: Forest Trees
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Pests, Diseases, and Aridity Have Shaped the Genome of Corymbia Citriodora
Lawrence Berkeley National Laboratory Recent Work Title Pests, diseases, and aridity have shaped the genome of Corymbia citriodora. Permalink https://escholarship.org/uc/item/5t51515k Journal Communications biology, 4(1) ISSN 2399-3642 Authors Healey, Adam L Shepherd, Mervyn King, Graham J et al. Publication Date 2021-05-10 DOI 10.1038/s42003-021-02009-0 Peer reviewed eScholarship.org Powered by the California Digital Library University of California ARTICLE https://doi.org/10.1038/s42003-021-02009-0 OPEN Pests, diseases, and aridity have shaped the genome of Corymbia citriodora ✉ Adam L. Healey 1,2 , Mervyn Shepherd 3, Graham J. King 3, Jakob B. Butler 4, Jules S. Freeman 4,5,6, David J. Lee 7, Brad M. Potts4,5, Orzenil B. Silva-Junior8, Abdul Baten 3,9, Jerry Jenkins 1, Shengqiang Shu 10, John T. Lovell 1, Avinash Sreedasyam1, Jane Grimwood 1, Agnelo Furtado2, Dario Grattapaglia8,11, Kerrie W. Barry10, Hope Hundley10, Blake A. Simmons 2,12, Jeremy Schmutz 1,10, René E. Vaillancourt4,5 & Robert J. Henry 2 Corymbia citriodora is a member of the predominantly Southern Hemisphere Myrtaceae family, which includes the eucalypts (Eucalyptus, Corymbia and Angophora; ~800 species). 1234567890():,; Corymbia is grown for timber, pulp and paper, and essential oils in Australia, South Africa, Asia, and Brazil, maintaining a high-growth rate under marginal conditions due to drought, poor-quality soil, and biotic stresses. To dissect the genetic basis of these desirable traits, we sequenced and assembled the 408 Mb genome of Corymbia citriodora, anchored into eleven chromosomes. Comparative analysis with Eucalyptus grandis reveals high synteny, although the two diverged approximately 60 million years ago and have different genome sizes (408 vs 641 Mb), with few large intra-chromosomal rearrangements. -
Transline Infrastructure Corridor Vegetation and Flora Survey
TROPICANA GOLD PROJECT Tropicana – Transline Infrastructure Corridor Vegetation and Flora Survey 025 Wellington Street WEST PERTH WA 6005 phone: 9322 1944 fax: 9322 1599 ACN 088 821 425 ABN 63 088 821 425 www.ecologia.com.au Tropicana Gold Project Tropicana Joint Venture Tropicana-Transline Infrastructure Corridor: Vegetation and Flora Survey July 2009 Tropicana Gold Project Tropicana-Transline Infrastructure Corridor Flora and Vegetation Survey © ecologia Environment (2009). Reproduction of this report in whole or in part by electronic, mechanical or chemical means, including photocopying, recording or by any information storage and retrieval system, in any language, is strictly prohibited without the express approval of ecologia Environment and/or AngloGold Ashanti Australia. Restrictions on Use This report has been prepared specifically for AngloGold Ashanti Australia. Neither the report nor its contents may be referred to or quoted in any statement, study, report, application, prospectus, loan, or other agreement document, without the express approval of ecologia Environment and/or AngloGold Ashanti Australia. ecologia Environment 1025 Wellington St West Perth WA 6005 Ph: 08 9322 1944 Fax: 08 9322 1599 Email: [email protected] i Tropicana Gold Project Tropicana-Transline Infrastructure Corridor Flora and Vegetation Survey Executive Summary The Tropicana JV (TJV) is currently undertaking pre-feasibility studies on the viability of establishing the Tropicana Gold Project (TGP), which is centred on the Tropicana and Havana gold prospects. The proposed TGP is located approximately 330 km east north-east of Kalgoorlie, and 15 km west of the Plumridge Lakes Nature Reserve, on the western edge of the Great Victoria Desert (GVD) biogeographic region of Western Australia. -
Border Rivers Maranoa - Balonne QLD Page 1 of 125 21-Jan-11 Species List for NRM Region Border Rivers Maranoa - Balonne, Queensland
Biodiversity Summary for NRM Regions Species List What is the summary for and where does it come from? This list has been produced by the Department of Sustainability, Environment, Water, Population and Communities (SEWPC) for the Natural Resource Management Spatial Information System. The list was produced using the AustralianAustralian Natural Natural Heritage Heritage Assessment Assessment Tool Tool (ANHAT), which analyses data from a range of plant and animal surveys and collections from across Australia to automatically generate a report for each NRM region. Data sources (Appendix 2) include national and state herbaria, museums, state governments, CSIRO, Birds Australia and a range of surveys conducted by or for DEWHA. For each family of plant and animal covered by ANHAT (Appendix 1), this document gives the number of species in the country and how many of them are found in the region. It also identifies species listed as Vulnerable, Critically Endangered, Endangered or Conservation Dependent under the EPBC Act. A biodiversity summary for this region is also available. For more information please see: www.environment.gov.au/heritage/anhat/index.html Limitations • ANHAT currently contains information on the distribution of over 30,000 Australian taxa. This includes all mammals, birds, reptiles, frogs and fish, 137 families of vascular plants (over 15,000 species) and a range of invertebrate groups. Groups notnot yet yet covered covered in inANHAT ANHAT are notnot included included in in the the list. list. • The data used come from authoritative sources, but they are not perfect. All species names have been confirmed as valid species names, but it is not possible to confirm all species locations. -
Evolution and Diversification of the Plant Gibberellin Receptor GID1
Evolution and diversification of the plant gibberellin receptor GID1 Hideki Yoshidaa,b, Eiichi Tanimotoc, Takaaki Hiraia, Yohei Miyanoirid,e, Rie Mitania, Mayuko Kawamuraa, Mitsuhiro Takedad,f, Sayaka Takeharaa, Ko Hiranoa, Masatsune Kainoshod,g, Takashi Akagih, Makoto Matsuokaa,1, and Miyako Ueguchi-Tanakaa,1 aBioscience and Biotechnology Center, Nagoya University, Nagoya, 464-8601 Aichi, Japan; bKihara Institute for Biological Research, Yokohama City University, Yokohama, 244-0813 Kanagawa, Japan; cGraduate School of Natural Sciences, Nagoya City University, Nagoya, 467-8501 Aichi, Japan; dStructural Biology Research Center, Graduate School of Science, Nagoya University, Nagoya, 464-8601 Aichi, Japan; eResearch Center for State-of-the-Art Functional Protein Analysis, Institute for Protein Research, Osaka University, Suita, 565-0871 Osaka, Japan; fDepartment of Structural BioImaging, Faculty of Life Sciences, Kumamoto University, 862-0973 Kumamoto, Japan; gGraduate School of Science and Engineering, Tokyo Metropolitan University, Hachioji, 192-0397 Tokyo, Japan; and hGraduate School of Agriculture, Kyoto University, 606-8502 Kyoto, Japan Edited by Mark Estelle, University of California, San Diego, La Jolla, CA, and approved July 10, 2018 (received for review April 9, 2018) The plant gibberellin (GA) receptor GID1 shows sequence similarity erwort Marchantia polymorpha (5–7). Furthermore, Hirano et al. to carboxylesterase (CXE). Here, we report the molecular evolution (5) reported that GID1s in the lycophyte Selaginella moellen- of GID1 from establishment to functionally diverse forms in dorffii (SmGID1s) have unique properties in comparison with eudicots. By introducing 18 mutagenized rice GID1s into a rice angiosperm GID1s: namely, lower affinity to bioactive GAs and gid1 null mutant, we identified the amino acids crucial for higher affinity to inactive GAs (lower specificity). -
Trees, Shrubs, and Perennials That Intrigue Me (Gymnosperms First
Big-picture, evolutionary view of trees and shrubs (and a few of my favorite herbaceous perennials), ver. 2007-11-04 Descriptions of the trees and shrubs taken (stolen!!!) from online sources, from my own observations in and around Greenwood Lake, NY, and from these books: • Dirr’s Hardy Trees and Shrubs, Michael A. Dirr, Timber Press, © 1997 • Trees of North America (Golden field guide), C. Frank Brockman, St. Martin’s Press, © 2001 • Smithsonian Handbooks, Trees, Allen J. Coombes, Dorling Kindersley, © 2002 • Native Trees for North American Landscapes, Guy Sternberg with Jim Wilson, Timber Press, © 2004 • Complete Trees, Shrubs, and Hedges, Jacqueline Hériteau, © 2006 They are generally listed from most ancient to most recently evolved. (I’m not sure if this is true for the rosids and asterids, starting on page 30. I just listed them in the same order as Angiosperm Phylogeny Group II.) This document started out as my personal landscaping plan and morphed into something almost unwieldy and phantasmagorical. Key to symbols and colored text: Checkboxes indicate species and/or cultivars that I want. Checkmarks indicate those that I have (or that one of my neighbors has). Text in blue indicates shrub or hedge. (Unfinished task – there is no text in blue other than this text right here.) Text in red indicates that the species or cultivar is undesirable: • Out of range climatically (either wrong zone, or won’t do well because of differences in moisture or seasons, even though it is in the “right” zone). • Will grow too tall or wide and simply won’t fit well on my property. -
Vascular Plants of Santa Cruz County, California
ANNOTATED CHECKLIST of the VASCULAR PLANTS of SANTA CRUZ COUNTY, CALIFORNIA SECOND EDITION Dylan Neubauer Artwork by Tim Hyland & Maps by Ben Pease CALIFORNIA NATIVE PLANT SOCIETY, SANTA CRUZ COUNTY CHAPTER Copyright © 2013 by Dylan Neubauer All rights reserved. No part of this publication may be reproduced without written permission from the author. Design & Production by Dylan Neubauer Artwork by Tim Hyland Maps by Ben Pease, Pease Press Cartography (peasepress.com) Cover photos (Eschscholzia californica & Big Willow Gulch, Swanton) by Dylan Neubauer California Native Plant Society Santa Cruz County Chapter P.O. Box 1622 Santa Cruz, CA 95061 To order, please go to www.cruzcps.org For other correspondence, write to Dylan Neubauer [email protected] ISBN: 978-0-615-85493-9 Printed on recycled paper by Community Printers, Santa Cruz, CA For Tim Forsell, who appreciates the tiny ones ... Nobody sees a flower, really— it is so small— we haven’t time, and to see takes time, like to have a friend takes time. —GEORGIA O’KEEFFE CONTENTS ~ u Acknowledgments / 1 u Santa Cruz County Map / 2–3 u Introduction / 4 u Checklist Conventions / 8 u Floristic Regions Map / 12 u Checklist Format, Checklist Symbols, & Region Codes / 13 u Checklist Lycophytes / 14 Ferns / 14 Gymnosperms / 15 Nymphaeales / 16 Magnoliids / 16 Ceratophyllales / 16 Eudicots / 16 Monocots / 61 u Appendices 1. Listed Taxa / 76 2. Endemic Taxa / 78 3. Taxa Extirpated in County / 79 4. Taxa Not Currently Recognized / 80 5. Undescribed Taxa / 82 6. Most Invasive Non-native Taxa / 83 7. Rejected Taxa / 84 8. Notes / 86 u References / 152 u Index to Families & Genera / 154 u Floristic Regions Map with USGS Quad Overlay / 166 “True science teaches, above all, to doubt and be ignorant.” —MIGUEL DE UNAMUNO 1 ~ACKNOWLEDGMENTS ~ ANY THANKS TO THE GENEROUS DONORS without whom this publication would not M have been possible—and to the numerous individuals, organizations, insti- tutions, and agencies that so willingly gave of their time and expertise. -
Avon Wheatbelt 1 (AW1 - Ancient Drainage Subregion)
Avon Wheatbelt 1 Avon Wheatbelt 1 (AW1 - Ancient Drainage subregion) BRETT BEECHAM NOVEMBER 2001 Subregional description and biodiversity Dominant land use values Mainly a mixture of (iv) Cultivation – dryland agriculture and (viii) Grazing – Improved pastures, dryland, with Description and area lesser areas of (xi) UCL and Crown reserves, (xiii) Conservation, (ii) Rural residential and (vii) Mining (see Appendix B, key b). The Avon Wheatbelt is an area of active drainage dissecting a Tertiary plateau in Yilgarn Craton. Gently undulating landscape of low relief. Proteaceous scrub- Continental Stress Class heaths, rich in endemics, on residual lateritic uplands and derived sandplains; mixed eucalypt, Allocasuarina The Continental Stress Class for AW1 is 1. huegeliana and Jam-York Gum woodlands on Quaternary alluvials and eluvials. Within this bioregion, AW1 is an Known special values in relation to landscape, ancient peneplain with low relief, gently undulating ecosystem, species and genetic values landscape. There is no connected drainage; salt lake chains occur as remnants of ancient drainage systems that Critical Weight Range Mammals: 35-7 000 g weight now only function in very wet years. Lateritic uplands are range mammals are threatened by fox predation. Two dominated by yellow sandplain. Climate is Semi-arid species are now totally extinct; the Pig-footed Bandicoot (Dry) Warm Mediterranean. Total area is 6,566,022 ha. and Crescent Nailtail Wallaby. Several species are locally extinct, and some are still extant. Species Current Conservation -
Management of Commercial Harvesting of Protected Flora in WA
Management of Commercial Harvesting of Protected Flora in Western Australia 1 July 2018 – 30 June 2023 June 2018 Management of Commercial Harvesting of Protected Flora in Western Australia - 1 July 2018 – 30 June 2023 Department of Biodiversity, Conservation and Attractions Locked Bag 104 Bentley Delivery Centre WA 6983 Phone: (08) 9219 9000 Fax: (08) 9334 0498 www.dbca.wa.gov.au © Department of Biodiversity, Conservation and Attractions on behalf of the State of Western Australia 2018 June 2018 This work is copyright. You may download, display, print and reproduce this material in unaltered form (retaining this notice) for your personal, non-commercial use or use within your organisation. Apart from any use as permitted under the Copyright Act 1968, all other rights are reserved. Requests and enquiries concerning reproduction and rights should be addressed to the Department of Biodiversity, Conservation and Attractions. This document was prepared by Species and Communities Branch Questions regarding the use of this material should be directed to: Melanie Smith Species and Communities Branch Department of Biodiversity, Conservation and Attractions Locked Bag 104 Bentley Delivery Centre WA 6983 Phone: 9219 9529 Email: [email protected] The recommended reference for this publication is: Department Biodiversity, Conservation and Attractions, 2013, Management of Commercial Harvesting of Protected Flora in Western Australia, 1 July 2018- 30 June 2023, Department of Biodiversity, Conservation and Attractions, Perth. Please note: urls in this document which conclude a sentence are followed by a full point. If copying the url please do not include the full point. Cover image Banksia hookeriana. Photo by M. -
Biodiversity Summary: Torres Strait, Queensland
Biodiversity Summary for NRM Regions Guide to Users Background What is the summary for and where does it come from? This summary has been produced by the Department of Sustainability, Environment, Water, Population and Communities (SEWPC) for the Natural Resource Management Spatial Information System. It highlights important elements of the biodiversity of the region in two ways: • Listing species which may be significant for management because they are found only in the region, mainly in the region, or they have a conservation status such as endangered or vulnerable. • Comparing the region to other parts of Australia in terms of the composition and distribution of its species, to suggest components of its biodiversity which may be nationally significant. The summary was produced using the Australian Natural Natural Heritage Heritage Assessment Assessment Tool Tool (ANHAT), which analyses data from a range of plant and animal surveys and collections from across Australia to automatically generate a report for each NRM region. Data sources (Appendix 2) include national and state herbaria, museums, state governments, CSIRO, Birds Australia and a range of surveys conducted by or for DEWHA. Limitations • ANHAT currently contains information on the distribution of over 30,000 Australian taxa. This includes all mammals, birds, reptiles, frogs and fish, 137 families of vascular plants (over 15,000 species) and a range of invertebrate groups. The list of families covered in ANHAT is shown in Appendix 1. Groups notnot yet yet covered covered in inANHAT ANHAT are are not not included included in the in the summary. • The data used for this summary come from authoritative sources, but they are not perfect. -
2018 Carolinapintodiniz.Pdf
UNIVERSIDADE DE BRASÍLIA INSTITUTO DE CIÊNCIAS BIOLÓGICAS DEPARTAMENTO DE BOTÂNICA PROGRAMA DE PÓS-GRADUAÇÃO EM BOTÂNICA Espectroscopia no infravermelho próximo para predição de lignina siringil/guaiacil em Eucalyptus usando equipamento portátil e de bancada. Carolina Pinto Diniz Orientador: Lúcio Flávio de Alencar Figueiredo Brasília – DF Março de 2018 Espectroscopia no infravermelho próximo para predição de lignina siringil/guaiacil em Eucalyptus usando equipamento portátil e de bancada. Dissertação submetida ao Programa de Pós- Graduação em Botânica da Universidade de Brasília, como um dos requisitos para obtenção do título de Mestre em Botânica. Carolina Pinto Diniz (Bolsista CAPES) Orientador: Lúcio Flávio de Alencar Figueiredo Agradecimentos Agradeço a Universidade de Brasília (UnB), em especial ao Programa de Pós-Graduação em Botânica (PPG BOT), pelo curso e estrutura de laboratórios, equipamentos e professores oferecidos para a realização deste trabalho. A Coordenação de Aperfeiçoamento de Pessoal de Nível Superior pelo apoio financeiro para a concessão de bolsa ofertada durante o período do curso de mestrado. A Empresa Brasileira de Pesquisa Agropecuária (Embrapa) pelo material (amostras de madeira de Eucalyptus spp.) pesquisado, a partir do qual o trabalho foi realizado. A Fundação de Apoio a Pesquisa do Distrito Federal pelo apoio financeiro oferecido para a participação na 18ª Conferência Internacional de Espectroscopia do Infravermelho Próximo em Copenhague, Dinamarca de 11 a 15 de junho de 2017. Agradeço ao meu orientador, Prof. Dr. Lúcio Flávio de Alencar Figueiredo, do PPG BOT/UnB primeiramente pela oportunidade para realizar em seu laboratório o estágio que possibilitou a realização do mestrado, mas sobretudo por todo o apoio, ensinamentos e orientação. -
Approved Conservation Advice for Corymbia Leptoloma
This Conservation Advice was approved by the Minister / Delegate of the Minister on: 1/10/2008 Approved Conservation Advice (s266B of the Environment Protection and Biodiversity Conservation Act 1999) Approved Conservation Advice for Corymbia leptoloma This Conservation Advice has been developed based on the best available information at the time this Conservation Advice was approved; this includes existing plans, records or management prescriptions for this species. Description Corymbia leptoloma, Family Myrtaceae, previously known as Eucalyptus leptoloma, is a medium sized tree growing to 20 m high. The bark is rough throughout, flaky, somewhat tessellated and yellow-grey in colour. Small branches are smooth-barked. Adult leaves are lance-shaped, 25–40 mm wide, glossy, bright green on the upper surface, and conspicuously paler below. Flowers are formed in terminal clusters. Flower buds are in groups (umbels) of seven, shortly stalked and egg-shaped, and 6–7 mm long when mature. The fruit is truncate- globose, 8–11 mm long and wide, with three cavities, and valves are deeply enclosed (Brooker & Bean, 1991; Hill & Johnson, 1995; Brooker & Kleinig, 2004). Flowering time is unknown. The related C. leichhardtii sometimes occurs in the same vicinity and can be distinguished from C. leptoloma by dull leaves that are a similar colour on both sides (CPBR, 2006). Conservation Status Corymbia leptoloma is listed as vulnerable. This species is eligible for listing as vulnerable under the Environment Protection and Biodiversity Conservation Act 1999 (Cwlth) (EPBC Act) as, prior to the commencement of the EPBC Act, it was listed as vulnerable under Schedule 1 of the Endangered Species Protection Act 1992 (Cwlth). -
Interim Recovery Plan 2004-2009
INTERIM RECOVERY PLAN NO. 164 DANDARAGAN MALLEE (EUCALYPTUS DOLOROSA) INTERIM RECOVERY PLAN 2004-2009 Gillian Stack1, Gina Broun2 & Val English3 1 Project Officer, WA Threatened Species and Communities Unit, CALM, PO Box 51 Wanneroo, 6946. 2 Flora Conservation Officer, CALM’s Moora District, PO Box 638, Jurien Bay 6516. 3 Acting Senior Ecologist, Threatened Species and Communities Unit, CALM, PO Box 51 Wanneroo, 6946. Photograph: S.D. Hopper June 2004 Department of Conservation and Land Management Western Australian Threatened Species and Communities Unit (WATSCU) PO Box 51, Wanneroo, WA 6946 Interim Recovery Plan for Eucalyptus dolorosa FOREWORD Interim Recovery Plans (IRPs) are developed within the framework laid down in Department of Conservation and Land Management (CALM) Policy Statements Nos. 44 and 50. IRPs outline the recovery actions that are required to urgently address those threatening processes most affecting the ongoing survival of threatened taxa or ecological communities, and begin the recovery process. CALM is committed to ensuring that Critically Endangered taxa are conserved through the preparation and implementation of Recovery Plans or Interim Recovery Plans and by ensuring that conservation action commences as soon as possible and always within one year of endorsement of that rank by the Minister. This Interim Recovery Plan will operate from June 2004 to May 2009 but will remain in force until withdrawn or replaced. It is intended that, if the taxon is still ranked Critically Endangered, this IRP will be reviewed after five years and the need for a full Recovery Plan assessed. This IRP was given regional approval on 4 June, 2004 and was approved by the Director of Nature Conservation on 22 June, 2004.