GBE Lineage-Specific Reductions of Plastid Genomes in an Orchid Tribe with Partially and Fully Mycoheterotrophic Species Yan-Lei Feng1,9,y, Susann Wicke2,y,Jian-WuLi3,YuHan4, Choun-Sea Lin5, De-Zhu Li6, Ting-Ting Zhou1,9, Wei-Chang Huang7,Lu-QiHuang8, and Xiao-Hua Jin1,* 1State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing, China 2Institute for Evolution and Biodiversity, University of Muenster, Germany 3Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Menglun Township, Mengla County, Yunnan, China 4Nanchang University, Jiangxi, China 5Agricultural Biotechnology Research Center, Academia Sinica, Taipei, Taiwan 6Key Laboratory of Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan, China 7Chenshan Shanghai Botanical Garden, Shanghai, Songjiang, China 8National Resource Centre for Chinese Materia Medica, China Academy of Chinese Medical Science, Beijing, China 9University of Chinese Academy of Sciences, Beijing, China yThese authors contributed equally to this work. *Corresponding author: E-mail:
[email protected]. Accepted: June 8, 2016 Data deposition: This project has been deposited at NCBI under the accession number KU551262-Ku551272. Abstract The plastid genome (plastome) of heterotrophic plants like mycoheterotrophs and parasites shows massive gene losses in conse- quence to the relaxation of functional constraints on photosynthesis. To understand the patterns of this convergent plastome reduction syndrome in heterotrophic plants, we studied 12 closely related orchids of three different lifeforms from the tribe Neottieae (Orchidaceae). We employ a comparative genomics approach to examine structural and selectional changes in plastomes within Neottieae. Both leafy and leafless heterotrophic species have functionally reduced plastid genome.