Supplementary Table 1. Control system M1 and M2 significantly expressed genes involved in macrophage differentiation and polarization. M1 Gene Name Entrez M2 Gene Name Entrez Gene ID Gene ID Interferon, gamma-inducible protein 16 3428 Cystinosis, nephropathic 1497
Hypothetical protein BC012330 116071 Protease, serine, 22 64063
Chemokine (C-C motif) ligand 2 6347 Niemann-Pick disease, type C1 4864
Poly (ADP-ribose) polymerase family, 83666 Phosphatidylinositol binding clathrin assembly 8301 member 9 protein Lipocalin-interacting membrane receptor 55716 Solute carrier family 38, member 6 145389
Epithelial stromal interaction 1 (breast) 94240 Homeobox C14 360030
2'-5'-oligoadenylate synthetase 3, 4940 Selenoprotein T 51714 100kDa Somatostatin receptor 2 6752 Angiopoietin-like 4 51129
Chemokine (C-X-C motif) ligand 16 58191 GRP1 (general receptor for phosphoinositides 160622 1)-associated scaffold protein GTPase, IMAP family member 8 155038 Nuclear receptor subfamily 4, group A, 8013 member 3 DR1-associated protein 1 (negative 10589 Chromosome 21 open reading frame 82 114036 cofactor 2 alpha) Interferon-induced protein 44 10964 Oviductal glycoprotein 1, 120kDa (mucin 9, 5016 oviductin) PTK2B protein tyrosine kinase 2 beta 2185 Chromosome 9 open reading frame 150 286343
Hypothetical protein BC012317 93082 30 kDa protein 55831
N-acetylglucosamine kinase 55577 Growth arrest-specific 2 like 3 283431
TPR domain containing STI2 199223 Serine protease inhibitor, Kunitz type 1 6692
Phosphodiesterase 4D interacting 9659 FK506 binding protein 1A, 12kDa 2280 protein (myomegalin) Baculoviral IAP repeat-containing 2 329 SH3 and cysteine rich domain 2 342667
2'-5'-oligoadenylate synthetase 2, 4939 ATPase, Na+/K+ transporting, beta 3 483 69/71kDa polypeptide V-yes-1 Yamaguchi sarcoma viral 4067 Annexin A1 301 related oncogene homolog Ras homolog gene family, member G 391 Chromosome 12 open reading frame 5 57103 (rho G) Caspase recruitment domain family, 84674 VGF nerve growth factor inducible 7425 member 6 Solute carrier organic anion transporter 28232 Solute carrier family 6 (neurotransmitter 6539 family, member 3A1 transporter, betaine/GABA), member 12 Interleukin 1 receptor, type II 7850 Tissue inhibitor of metalloproteinase 4 7079
Solute carrier family 25, member 27 9481 CD1C antigen, c polypeptide 911
V-src sarcoma (Schmidt-Ruppin A-2) 6714 KIAA1919 91749 viral oncogene homolog (avian) 5,10-methenyltetrahydrofolate 10588 Synuclein, beta 6620 synthetase (5-formyltetrahydrofolate cyclo-ligase) Ligand of numb-protein X 84708 Chromosome 20 open reading frame 139 140809
Discoidin domain receptor family, 4921 Transmembrane 7 superfamily member 1 7107 member 2 (upregulated in kidney) 2'-5'-oligoadenylate synthetase-like 8638 Translation factor sui1 homolog 10289
Hypothetical protein FLJ40722 285966 RCE1 homolog, prenyl protein protease (S. 9986 cerevisiae) Amyotrophic lateral sclerosis 4 23064 Solute carrier family 24 57419 (sodium/potassium/calcium exchanger), member 3 Normal mucosa of esophagus specific 1 84419 Sortilin-related VPS10 domain containing 114815 receptor 1 Ring finger protein (C3HC4 type) 159 84333 Dehydrogenase/reductase (SDR family) 51635 member 7 HEG homolog 57493 Interleukin 6 signal transducer (gp130, 3572 oncostatin M receptor) IBR domain containing 3 127544 Tumor necrosis factor receptor superfamily, 4982 member 11b (osteoprotegerin) Sialyltransferase 4B (beta-galactoside 6483 Stress-induced-phosphoprotein 1 10963 alpha-2,3-sialyltransferase) (Hsp70/Hsp90-organizing protein) CASP8 and FADD-like apoptosis 8837 NADPH oxidase organizer 1 124056 regulator Thyroid hormone receptor associated 9969 Epidermal growth factor receptor pathway 2059 protein 1 substrate 8 Chemokine (C-C motif) receptor 7 1236 Hypothetical protein FLJ20753 55036
Glutamine-fructose-6-phosphate 9945 Tubulin, alpha 8 51807 transaminase 2 Histone 1, H2aj 8331 Myosin VI 4646
Chemokine (C-C motif) ligand 1 6346 Aryl hydrocarbon receptor nuclear 406 translocator-like Solute carrier family 43, member 2 124935 Hemicentin 83872
Cancer/testis antigen 1B 1485 RAS p21 protein activator (GTPase activating 5921 protein) 1 Histone 1, H2bg 8339 Visual system homeobox 1 homolog, CHX10- 30813 like (zebrafish) Histone 3, H2a 92815 Hypothetical protein MGC19780 199857
Histone 1, H2bl 8340 Glutaminase 2744
Histone 1, H2be 8344 Solute carrier family 16 (monocarboxylic acid 9120 transporters), member 6 Histone 1, H2bn 8341 Prion protein (p27-30) 5621
TNFAIP3 interacting protein 1 10318 Phosphatidylinositol glycan, class W 284098
TNFAIP3 interacting protein 3 79931 Serine protease inhibitor, Kazal type 6 404203
Serine (or cysteine) proteinase inhibitor, 8710 Chromodomain helicase DNA binding protein 55636 clade B (ovalbumin), member 7 7 Interferon-induced protein with 3434 Syntaxin binding protein 1 6812 tetratricopeptide repeats 1 Tumor protein p53 inducible nuclear 58476 Diacylglycerol O-acyltransferase homolog 2 84649 protein 2 (mouse) Superoxide dismutase 2, mitochondrial 6648 Protein kinase C, alpha 5578
Ankyrin repeat and BTB (POZ) domain 80325 Retinol dehydrogenase 10 (all-trans) 157506 containing 1 Secretogranin III 29106 Hypothetical protein LOC151146 79134
Interferon regulatory factor 7 3665 Hypothetical protein LOC55924 55924
Persephin 5623 Biliverdin reductase B (flavin reductase 645 (NADPH)) Poly (ADP-ribose) polymerase family, 84875 KIAA0802 23255 member 10 F-box protein 32 114907 Protein phosphatase 1 (formerly 2C)-like 151742
SP140 nuclear body protein 11262 HIV-1 induced protein HIN-1 54726
Chromosome 1 open reading frame 38 9473 Methionyl-tRNA formyltransferase, 123263 mitochondrial Myosin regulatory light chain MRLC2 103910 Ubiquitin-like 3 5412
Serine dehydratase 10993 DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 9188
KIAA1404 protein 57169 Phytoceramidase, alkaline 55331
Sidekick homolog 2 (chicken) 54549 ATP-binding cassette, sub-family G (WHITE), 9429 member 2 Rab geranylgeranyltransferase, alpha 5875 Glucose-fructose oxidoreductase domain 54438 subunit containing 1 Tumor necrosis factor receptor 8764 Collagen, type VI, alpha 2 1292 superfamily, member 14 (herpes virus entry mediator) Regulatory factor X, 3 (influences HLA 5991 Chromosome 9 open reading frame 55 55667 class II expression) HORMA domain containing protein 84072 Acid phosphatase-like 2 92370
Hypothetical protein FLJ11286 55337 Collagen, type VI, alpha 1 1291
Hyperparathyroidism 2 (with jaw tumor) 79577 Germ cell associated 1 83445
KIAA1970 protein 124454 Adaptor-related protein complex 2, alpha 2 161 subunit GRIP1 associated protein 1 56850 Sialytransferase 7 30815
Vascular endothelial growth factor C 7424 Solute carrier family 27 (fatty acid 10999 transporter), member 4 RasGEF domain family, member 1B 153020 Protease, serine, 23 11098
Hypothetical protein FLJ32009 220001 Hypothetical protein PP1665 81544
Hypothetical protein LOC348094 348094 Adenosine monophosphate deaminase 2 271 (isoform L) Zinc finger, MYND domain containing 15 84225 Nestin 10763
Hypothetical protein FLJ39575 286006 Protein kinase C and casein kinase substrate 29763 in neurons 3 Tumor necrosis factor receptor 8792 Collomin 342035 superfamily, member 11a, activator of NFKB ADP-ribosylation factor-like 8 221079 Chromodomain helicase DNA binding protein 80205 9 Acyl-Coenzyme A binding domain 91452 Hypothetical protein FLJ32954 151393 containing 5 Pellino homolog 1 (Drosophila) 57162 Adrenergic, alpha-1B-, receptor 147
Brain abundant, membrane attached 10409 Carbonyl reductase 3 874 signal protein 1 IQ motif containing GTPase activating 10788 Transmembrane 4 superfamily member 2 7102 protein 2 Hypothetical protein MGC4655 84752 ATP-binding cassette, sub-family B 5244 (MDR/TAP), member 4 KIAA1463 protein 57609 Solute carrier family 20 (phosphate 6575 transporter), member 2 Thyroid hormone receptor interactor 12 9320 KIAA0690 23223
Tight junction protein 1 (zona occludens 7082 Four and a half LIM domains 3 2275 1) Signal transducer and activator of 6774 Zinc finger CCCH type domain containing 8 84524 transcription 3 (acute-phase response factor) Chemokine (C-X-C motif) ligand 14 9547 Parathyroid hormone-like hormone 5744
Mannosidase, beta A, lysosomal 4126 Pleckstrin homology domain containing, 79156 family F (with FYVE domain) member 1 Hypothetical protein DKFZp761A052 55593 Mitochondrial ribosomal protein S6 64968
RAB43, member RAS oncogene family 339122 Diencephalon/mesencephalon homeobox 1 127343
Chromosome 9 open reading frame 95 54981 Six transmembrane epithelial antigen of the 26872 prostate ERO1-like beta (S. cerevisiae) 56605 Antigen p97 (melanoma associated) 4241
Myosin regulatory light chain MRCL3 10627 Plexin domain containing 2 84898
Butyrophilin, subfamily 2, member A3 54718 Integrin, alpha M (CD11b) 3684
Sialyltransferase 8D (alpha-2, 8- 7903 Tryptophan 2,3-dioxygenase 6999 polysialyltransferase) Cathepsin S 1520 Adenosine A3 receptor 140
FOS-like antigen 2 2355 Mitochondrial tumor suppressor 1 57509
General transcription factor IIF, 2962 Tumor necrosis factor receptor superfamily, 27242 polypeptide 1, 74kDa member 21 GCIP-interacting protein p29 25949 Chromosome 20 open reading frame 32 57091
Hypothetical protein LOC283680 283680 Hypothetical protein MGC34732 220047 Hypothetical protein MGC35194 93190 Hypothetical protein MGC40397 121053
Chemokine (C-C motif) ligand 5 6352 Peroxisome proliferative activated receptor, 5468 gamma Glucosamine (N-acetyl)-6-sulfatase 2799 FCH domain only 1 23149 (Sanfilippo disease IIID) Hypothetical protein LOC285216 285216 Abhydrolase domain containing 6 57406
Chromosome 10 open reading frame 70 55847 Mitochondrial folate transporter/carrier 81034
Hypothetical protein FLJ32833 148545 Chromosome 6 open reading frame 54 26236
Mdm4, transformed 3T3 cell double 4194 Prostate cancer associated protein 6 85414 minute 4, p53 binding protein (mouse) Transient receptor potential cation 51393 Protein tyrosine phosphatase, non-receptor 5784 channel, subfamily V, member 2 type 14 Fukutin related protein 79147 N-acetyltransferase 5 (ARD1 homolog, S. 51126 cerevisiae) Hypothetical protein BC004921 93349 Inositol polyphosphate-1-phosphatase 3628
Hepatitis A virus cellular receptor 1 26762 KIAA1394 protein 57571
Chromosome 6 open reading frame 145 221749 Excision repair cross-complementing rodent 2067 repair deficiency Zinc finger protein 407 55628 Porcupine homolog (Drosophila) 64840
CREB binding protein (Rubinstein-Taybi 1387 MAP1 light chain 3-like protein 2 440738 syndrome) Beta-2-microglobulin 567 Carboxypeptidase E 1363
FXYD domain containing ion transport 486 Adaptor-related protein complex 3, beta 2 8120 regulator 2 subunit Tryptophanyl-tRNA synthetase 7453 Potassium voltage-gated channel, subfamily 81033 H (eag-related), member 6 Similar to KIAA0592 protein 387680 Gametogenetin 199720
Ca2+dependent activator protein for 93664 Hypothetical protein MGC45871 359845 secretion 2 Lin-10 protein homolog 80262 Solute carrier family 16 (monocarboxylic acid 6567 transporters), member 2 LIM domain only 4 8543 Uncharacterized hypothalamus protein HT008 55852
Cyclin L1 57018 Discoidin, CUB and LCCL domain containing 131566 2 RAB2B, member RAS oncogene family 84932 Potassium channel modulatory factor 1 56888
Bromodomain containing 2 6046 Apical protein 2 134549
Spermatogenesis associated 5-like 1 79029 Amyloid beta (A4) precursor protein-binding, 54518 family B, member 1 interacting protein Myelin basic protein 4155 Hypothetical protein MGC16279 85002
Ubiquitin specific protease 18 11274 Dedicator of cytokinesis 3 1795
Zinc finger CCCH type domain 64761 Serine (or cysteine) proteinase inhibitor, clade 6318 containing 1 B (ovalbumin), member 4 SNF7 domain containing 2 51510 Serine (or cysteine) proteinase inhibitor, clade 6317 B (ovalbumin), member 3 Interferon-induced protein with 3437 Matrix metalloproteinase 12 (macrophage 4321 tetratricopeptide repeats 3 elastase) Kallikrein 10 5655 KIAA0040 gene product 9674
Lysosomal-associated membrane 27074 Aldehyde dehydrogenase 1 family, member 8854 protein 3 A2 Nuclear receptor coactivator 7 135112 Tudor domain containing 9 122402
Hypothetical protein FLJ31033 91351 Peroxisome proliferative activated receptor, 133522 gamma, coactivator 1, beta Interferon induced with helicase C 64135 Dishevelled associated activator of 23002 domain 1 morphogenesis 1 TERF1 (TRF1)-interacting nuclear factor 26277 RNA binding motif, single stranded interacting 5937 2 protein 1 Arginine-glutamic acid dipeptide (RE) 473 Fc fragment of IgG, low affinity IIb, receptor 2213 repeats for (CD32) EH-domain containing 4 30844 KIAA0859 51603
Adult retina protein 153222 Suppressor of cytokine signaling 1 8651
Interferon-induced protein with 24138 KIAA0701 protein 23074 tetratricopeptide repeats 5 Interferon, alpha-inducible protein (clone 9636 Follistatin 10468 IFI-15K) Ankyrin repeat and sterile alpha motif 23294 Mitogen-inducible gene 6 54206 domain containing 1 Caspase 3, apoptosis-related cysteine 836 Rhomboid, veinlet-like 4 (Drosophila) 162494 protease Kelch-like 6 (Drosophila) 89857 Pyruvate dehydrogenase phosphatase 57546 isoenzyme 2 Zinc finger, DHHC domain containing 17 23390 Non imprinted in Prader-Willi/Angelman 123606 syndrome 1 Cathepsin O 1519 Thrombospondin, type I, domain containing 2 84870
Purinergic receptor P2X, ligand-gated 5027 Mitogen-activated protein kinase 1 5594 ion channel, 7 Nuclear receptor subfamily 2, group C, 7182 Male sterility domain containing 1 55711 member 2 Sp3 transcription factor 6670 Chromosome 6 open reading frame 114 85411
Transcription factor SMIF 55802 Chromosome 21 open reading frame 13 150082
KIAA1033 protein 23325 Chromosome 10 open reading frame 22 84890
Arrestin domain containing 3 57561 Single stranded DNA binding protein 3 23648
APG12 autophagy 12-like (S. 9140 Insulin receptor substrate 1 3667 cerevisiae) Major vault protein 9961 Hypothetical protein FLJ31052 127943
Apolipoprotein L, 2 23780 Caspase recruitment domain family, member 29775 10 Ubiquitin protein ligase E3 component n- 197131 Fibronectin 1 2335 recognin 1 C-type (calcium dependent, 9976 Solute carrier family 5 (inositol transporters), 6526 carbohydrate-recognition domain) lectin, member 3 superfamily member 2 Cylindromatosis (turban tumor 1540 Secretogranin II (chromogranin C) 7857 syndrome) Ubiquitin specific protease 11 8237 Solute carrier family 30 (zinc transporter), 7781 member 3 Ubiquitin specific protease 15 9958 Cystathionase (cystathionine gamma-lyase) 1491
Transcription factor 4 6925 ATP binding cassette gene, sub-family A 154664 (ABC1), member 13 SH3-domain binding protein 5 (BTK- 9467 Glioma-associated oncogene homolog (zinc 2735 associated) finger protein) Runt-related transcription factor 3 864 Hypothetical protein FLJ20533 54968
Estrogen receptor 1 2099 Cytoplasmic FMR1 interacting protein 2 26999
Endothelial cell growth factor 1 (platelet- 1890 Rai-like protein 399694 derived) Glutamate receptor, ionotropic, kainate 2898 Dystrobrevin, alpha 1837 2 Microfibrillar associated protein 5 8076 Oxidised low density lipoprotein (lectin-like) 4973 receptor 1 Blood vessel epicardial substance 11149 Spectrin, alpha, non-erythrocytic 1 (alpha- 6709 fodrin) Fatty acid binding protein 6, ileal 2172 Hypothetical protein FLJ20244 55621 (gastrotropin) Galactose mutarotase (aldose 1- 130589 Solute carrier family 26, member 4 5172 epimerase) Telomerase-associated protein 1 7011 E2F transcription factor 5, p130-binding 1875
Carbonic anhydrase XII 771 Ras homolog gene family, member F (in 54509 filopodia) Nuclear factor (erythroid-derived 2)-like 4779 Transmembrane 4 superfamily member 17 26262 1 Hypothetical gene CG012 116829 Hypothetical LOC401588 401588
KIAA0226 gene product 9711 Myoglobin 4151
Thymosin, beta 10 9168 Insulin-like growth factor binding protein 5 3488
Myosin IA 4640 Tripartite motif-containing 54 57159
Hypothetical protein LOC155036 155036 A disintegrin-like and metalloprotease 9510 (reprolysin type) with thrombospondin type 1 motif, 1 Platelet-derived growth factor receptor- 5157 Nicalin homolog (zebrefish) 56926 like Forkhead box F1 2294 CD209 antigen-like 10332
Hypothetical protein FLJ13855 65264 KIAA0090 protein 23065
T-box 3 (ulnar mammary syndrome) 6926 M-phase phosphoprotein 6 10200
RAB8A, member RAS oncogene family 4218 Fatty acid 2-hydroxylase 79152 DNA-damage-inducible transcript 3 1649 Cortactin binding protein 2 83992
Poliovirus receptor-related 2 5819 Similar to microtubule associated testis 375449 (herpesvirus entry mediator B) specific serine/threonine protein kinase BCL2-antagonist/killer 1 578 Dual specificity phosphatase 13 51207
PC2 (positive cofactor 2, multiprotein 51586 Protease, serine, 15 9361 complex) glutamine/Q-rich-associated protein Transcription factor EC 22797 Phosphatidic acid phosphatase type 2B 8613
Chromosome 6 open reading frame 62 81688 CD209 antigen 30835
Chromosome 16 open reading frame 7 9605 A disintegrin-like and metalloprotease 11096 (reprolysin type) with thrombospondin type 1 motif, 5 Cytochrome P450, family 11, subfamily 1584 Stimulated by retinoic acid gene 6 64220 B, polypeptide 1 Pleckstrin homology, Sec7 and coiled- 9267 RAS-related on chromosome 22 10633 coil domains 1(cytohesin 1) Egl nine homolog 3 (C. elegans) 112399 Copine VI (neuronal) 9362
Endothelin receptor type B 1910 Sortilin 1 6272
Regulator of G-protein signalling 20 8601 Deoxyribonuclease I-like 3 1776
Ureidopropionase, beta 51733 Paraneoplastic antigen 30850
SH2 domain containing phosphatase 79368 Transmembrane 4 superfamily member 12 23554 anchor protein 1 GLI-Kruppel family member GLI3 (Greig 2737 Factor for adipocyte differentiation 158 84230 cephalopolysyndactyly syndrome) GTPase, IMAP family member 4 55303 Cytokine inducible SH2-containing protein 1154
Fer-1-like 3, myoferlin (C. elegans) 26509 Adenylate kinase 5 26289
Myosin X 4651 Src-like-adaptor 6503
Plexin A2 5362 Potassium channel, subfamily K, member 6 9424
Hypothetical protein MGC8902 284565 Quiescin Q6 5768
Hypothetical protein LOC200030 200030 Basic leucine zipper transcription factor, ATF- 10538 like Hypothetical protein DJ328E19.C1.1 25832 Chromosome 6 open reading frame 60 79632
Glycophorin C (Gerbich blood group) 2995 Hypothetical protein FLJ25555 124930
Synaptic vesicle glycoprotein 2B 9899 T-cell acute lymphocytic leukemia 1 6886
Fasciculation and elongation protein 9638 Inhibin, beta E 83729 zeta 1 (zygin I) KIAA1598 57698 Lysyl oxidase 4015
Spectrin repeat containing, nuclear 23345 Protein phosphatase 1, regulatory (inhibitor) 94274 envelope 1 subunit 14A Mediator of RNA polymerase II 116931 Hypothetical protein MGC4172 79154 transcription, subunit 12 homolog (yeast)-like Protein tyrosine phosphatase, receptor 8499 T-cell activation leucine repeat-rich protein 23507 type, f polypeptide (PTPRF) SMAD specific E3 ubiquitin protein 64750 Meis1, myeloid ecotropic viral integration site 4212 ligase 2 1 homolog 2 (mouse) Response gene to complement 32 28984 G protein-coupled receptor kinase interactor 1 28964
Syntaxin 6 10228 Chemokine (C-C motif) ligand 17 6361
Amyloid beta (A4) precursor protein- 10307 Chromosome 2 open reading frame 23 65055 binding, family B, member 3 Hypothetical protein FLJ20647 55013 Arrestin domain containing 4 91947
Hypothetical protein DKFZp547L112 81787 Chemokine (C-C motif) ligand 26 10344
Ring finger protein 135 84282 Chromosome 14 open reading frame 58 55640
Hypothetical protein MGC16121 84848 Neurotrophic tyrosine kinase, receptor, type 1 4914
Protein C (inactivator of coagulation 5624 Cyclic nucleotide gated channel alpha 1 1259 factors Va and VIIIa) Zinc finger protein 533 151126 Wingless-type MMTV integration site family, 7471 member 1 GRINL1A complex upstream protein 145781 Carbohydrate kinase-like 23729
RGM domain family, member B 285705 Transient receptor potential cation channel, 7442 subfamily V, member 1 Vanin 1 8876 Mitogen-activated protein kinase-activated 7867 protein kinase 3 BTB and CNC homology 1, basic 60468 Myozenin 2 51778 leucine zipper transcription factor 2 G protein-coupled receptor 77 27202 Cholesterol 25-hydroxylase 9023
Hypothetical protein MGC10986 80774 Ataxin 1 6310
Chromosome 14 open reading frame 4 64207 Hypothetical protein MGC22014 200424
Snail homolog 2 (Drosophila) 6591 Monocyte to macrophage differentiation- 23531 associated Regucalcin (senescence marker protein- 9104 Cysteinyl leukotriene receptor 1 10800 30) Spermatogenesis associated 13 221178 Chromosome 5 open reading frame 18 7905
Solute carrier family 9 (sodium/hydrogen 285195 Plastin 1 (I isoform) 5357 exchanger), isoform 9 Prostaglandin E receptor 4 (subtype 5734 Sialyltransferase 1 (beta-galactoside alpha- 6480 EP4) 2,6-sialyltransferase) Intersectin 1 (SH3 domain protein) 6453 Homer homolog 2 (Drosophila) 9455
Leucine rich repeat containing 25 126364 Pericentriolar material 1 5108
Interleukin-1 receptor-associated kinase 3656 Rab9 effector p40 10244 2 Dual specificity phosphatase 10 11221 Succinate receptor 1 56670
Von Hippel-Lindau tumor suppressor 7428 Cathepsin C 1075
Zinc finger protein 462 58499 Six transmembrane epithelial antigen of 261729 prostate 2 Membrane protein, palmitoylated 5 64398 Adenylate cyclase 1 (brain) 107 (MAGUK p55 subfamily member 5) C-mir, cellular modulator of immune 220972 Fibrinogen-like 1 2267 recognition Chemokine (C-X-C motif) ligand 5 6374 CDK5 regulatory subunit associated protein 2 55755
Visinin-like 1 7447 FLJ00332 protein 374403
Hypothetical protein AE2 84224 Potassium channel, subfamily K, member 12 56660
V-erb-a erythroblastic leukemia viral 2066 Hypothetical protein FLJ31166 120939 oncogene homolog 4 (avian) Dynein, axonemal, heavy polypeptide 7 56171 Hypothetical protein A-211C6.1 57149
SWAP-70 protein 23075 B/K protein 51760
Mitogen-activated protein kinase kinase 4217 Junctophilin 1 56704 kinase 5 Thrombospondin 1 7057 CD1B antigen, b polypeptide 910
CD14 antigen 929
Hypothetical protein FLJ14525 84886
Phosphodiesterase 8B 8622
Histone deacetylase 7A 51564
Bradykinin receptor B2 624
Solute carrier family 5 (sodium/glucose 6524 cotransporter), member 2 Chemokine orphan receptor 1 57007
EH-domain containing 1 10938
Myristoylated alanine-rich protein kinase 4082 C substrate Trichorhinophalangeal syndrome I 7227
Notch homolog 2 (Drosophila) N- 388677 terminal like Yippee-like 3 (Drosophila) 83719
Hypothetical protein LOC196394 196394
Rabconnectin-3 23312
TANK-binding kinase 1 29110 Oxidation resistance 1 55074
Prostaglandin-endoperoxide synthase 2 5743
RAB6 interacting protein 1 23258
Sarcospan (Kras oncogene-associated 8082 gene) AT-binding transcription factor 1 463
IBR domain containing 2 255488
5-hydroxytryptamine (serotonin) 3357 receptor 2B G protein-coupled receptor 43 2867
Sema domain, transmembrane domain 80031 (TM), and cytoplasmic domain MCF.2 cell line derived transforming 4168 sequence Nucleotide-binding oligomerization 84166 domains 27 Hypothetical gene CG018 90634
A disintegrin-like and metalloprotease 9508 (reprolysin type) with thrombospondin type 1 motif, 3 CAP, adenylate cyclase-associated 10486 protein, 2 (yeast) Hypothetical protein FLJ31818 154743
Signal transducer and activator of 6775 transcription 4 DRE1 protein 54800
GTP cyclohydrolase 1 (dopa-responsive 2643 dystonia) Wilms tumor 1 associated protein 9589
Hypothetical protein FLJ11259 55332
Zonadhesin 7455
Prostaglandin I2 (prostacyclin) receptor 5739 (IP) Pleiomorphic adenoma gene 1 5324
Microtubule-associated protein 1 light 84557 chain 3 alpha NK3 transcription factor related, locus 1 4824 (Drosophila) Guanylate binding protein 5 115362
Matrix metalloproteinase 23B 8510 Notch homolog 4 (Drosophila) 4855
Frizzled homolog 4 (Drosophila) 8322
Tumor necrosis factor, alpha-induced 7127 protein 2 Sterile alpha motif domain containing 9 54809
Phospholipid scramblase 1 5359
Guanylate binding protein 2, interferon- 2634 inducible TNFRSF1A-associated via death 8717 domain Signal transducer and activator of 6772 transcription 1, 91kDa Tripartite motif-containing 21 6737
Ubiquitin D 10537
Bone marrow stromal cell antigen 2 684
EPH receptor B2 2048
Ankyrin repeat and FYVE domain 51479 containing 1 MHC class I polypeptide-related 4277 sequence B Ets variant gene 7 (TEL2 oncogene) 51513
P300/CBP-associated factor 8850
Nuclear antigen Sp100 6672
Pleckstrin homology domain containing, 57664 family A XIAP associated factor-1 54739
Myxovirus (influenza virus) resistance 2 4600 (mouse) Lectin, galactoside-binding, soluble, 8 3964 (galectin 8) Chromosome 21 open reading frame 91 54149
Hect domain and RLD 5 51191
Hypothetical protein LOC134285 134285
5-azacytidine induced 2 64343
Peroxisomal biogenesis factor 5-like 51555
Glutamate receptor interacting protein 2 80852
Chemokine (C-C motif) ligand 19 6363 KIAA0408 9729
Leucine rich repeat containing 3B 116135
Killer cell immunoglobulin-like receptor, 3805 two domains, long cytoplasmic tail, 4 Zinc finger CCCH type, antiviral 1 56829
Family with sequence similarity 8, 51439 member A1 5'-3' exoribonuclease 1 54464
Polyribonucleotide 87178 nucleotidyltransferase 1 Transglutaminase 1 (K polypeptide 7051 epidermal type I, protein-glutamine- gamma-glutamyltransferase) Calcium/calmodulin-dependent serine 8573 protein kinase (MAGUK family) GTP binding protein 1 9567
F-box protein 6 26270
T-cell activation GTPase activating 117289 protein Phosphodiesterase 4B, cAMP-specific 5142 (phosphodiesterase E4 dunce homolog, Drosophila) Phospholipase A2-activating protein 9373
Syntaxin 17 55014
Serine (or cysteine) proteinase inhibitor, 710 clade G (C1 inhibitor), member 1 Promyelocytic leukemia 5371
Activated Cdc42-associated kinase 1 10188
RAB24, member RAS oncogene family 53917
Chromosome 20 open reading frame 18 10616
Mov10, Moloney leukemia virus 10, 4343 homolog (mouse) Ras homolog enriched in brain like 1 121268
Homolog of yeast Sfi1 9814
Complement component 1, q 713 subcomponent, beta polypeptide Hypothetical protein MGC5566 79015
Similar to RIKEN cDNA 1810038N08 375346 gene Similar to Taxol resistant associated 389903 protein 3 (TRAG-3) CSAG family, member 2 9598
Chondrosarcoma associated gene 1 158511
Glypican 5 2262
CD69 antigen (p60, early T-cell 969 activation antigen) P8 protein (candidate of metastasis 1) 26471
Naked cuticle homolog 1 (Drosophila) 85407
HLA complex P5 10866
Hypothetical protein BC017868 159091
Testis expressed sequence 14 56155
Guanylate binding protein 4 115361
Guanylate binding protein 3 2635
Butyrophilin, subfamily 3, member A3 10384
Apolipoprotein B mRNA editing enzyme, 60489 catalytic polypeptide-like 3G 28kD interferon responsive protein 64108
Secreted and transmembrane 1 6398
Apolipoprotein L, 6 80830
Hypothetical protein LOC129607 129607
Guanine nucleotide binding protein (G 59345 protein), beta polypeptide 4 Tripartite motif-containing 5 85363
Hypothetical protein DKFZp761G058 152926
Zinc finger protein 101 94039
Core 1 UDP-galactose:N- 56913 acetylgalactosamine-alpha-R beta 1,3- galactosyltransferase RAR-related orphan receptor B 6096
Protein phosphatase 1, regulatory 5507 (inhibitor) subunit 3C Hypothetical protein FLJ20581 54988
Interferon induced transmembrane 8519 protein 1 (9-27) Solute carrier family 25, member 28 81894
Hypothetical protein FLJ12650 79570 FXYD domain containing ion transport 53826 regulator 6 Butyrophilin, subfamily 3, member A1 11119
Tripartite motif-containing 25 7706
5'-nucleotidase, cytosolic III 51251
Lymphocyte-activation gene 3 3902
Inter-alpha (globulin) inhibitor H4 3700 (plasma Kallikrein-sensitive glycoprotein) NEDD8 ultimate buster-1 51667
Hyaluronan and proteoglycan link 145864 protein 3 Apolipoprotein L, 1 8542
Proteasome (prosome, macropain) 5685 subunit, alpha type, 4 Hypothetical protein HSPC117 51493
Egf-like module containing, mucin-like, 2015 hormone receptor-like 1 Interferon induced transmembrane 10410 protein 3 (1-8U) Phorbol-12-myristate-13-acetate- 5366 induced protein 1 Retinoic acid receptor responder 5920 (tazarotene induced) 3 G protein-coupled receptor 155 151556
RNA binding motif protein 11 54033
Zinc finger protein (C2H2 type) 277 11179
Killer cell immunoglobulin-like receptor, 3803 two domains, long cytoplasmic tail, 2 Claudin 23 137075
Hypothetical protein FLJ12806 64853
Nijmegen breakage syndrome 1 (nibrin) 4683
Cytoplasmic polyadenylation element 22849 binding protein 3 Metallothionein 1J 4498
Interferon-induced protein 44 10964
Sialoadhesin 6614
Likely ortholog of mouse D11lgp2 79132
SP110 nuclear body protein 3431 Hypothetical protein FLJ23375 80021
Indoleamine-pyrrole 2,3 dioxygenase 3620
KIAA1618 57714
Protein kinase, interferon-inducible 5610 double stranded RNA dependent Interferon-induced protein 35 3430
DEAD (Asp-Glu-Ala-Asp) box 23586 polypeptide 58 Deltex 3-like (Drosophila) 151636
Hypothetical protein FLJ20035 55601
Caspase 5, apoptosis-related cysteine 838 protease Chemokine (C-X-C motif) ligand 11 6373
Interleukin 6 (interferon, beta 2) 3569
Polycystic kidney disease 2-like 1 9033
ATX1 antioxidant protein 1 homolog 475 (yeast) Chromosome 17 open reading frame 27 57674
Similar to PMS4 homolog mismatch 57639 repair protein - human Chromosome 9 open reading frame 91 203197
Tripartite motif-containing 56 81844
Interleukin 15 3600
Basic leucine zipper nuclear factor 1 8548 (JEM-1) G protein-coupled receptor 42 2866
Histone 1, H3c 8352
Complement factor H-related 1 3078
Immunoglobulin superfamily, member 8 93185
Pim-2 oncogene 11040
Interleukin 23, alpha subunit p19 51561
Hypothetical protein LOC283551 283551
Poly (ADP-ribose) polymerase family, 54625 member 14 Interferon-induced protein with 3433 tetratricopeptide repeats 2 Radical S-adenosyl methionine domain 91543 containing 2 Lectin, galactoside-binding, soluble, 3 3959 binding protein Tripartite motif-containing 22 10346
Unc-93 homolog B1 (C. elegans) 81622
Signal transducer and activator of 6773 transcription 2, 113kDa CD80 antigen (CD28 antigen ligand 1, 941 B7-1 antigen) DNA polymerase-transactivated protein 26010 6 Tripartite motif-containing 6 and tripartite 53840 motif-containing 34 Chromosome 21 open reading frame 42 54072
Interferon regulatory factor 1 3659
Peroxisomal proliferator-activated 85441 receptor A interacting complex 285 SRY (sex determining region Y)-box 5 6660
Leucine aminopeptidase 3 51056
GPI deacylase 80055
Catenin, beta like 1 56259
Hairy and enhancer of split 4 57801 (Drosophila) Proline dehydrogenase (oxidase) 1 5625
Ring finger protein 36 140691
Peptide YY 5697
Hypothetical protein FLJ11000 55281
Myeloid differentiation primary response 4615 gene (88) KIAA0082 23070
Major histocompatibility complex, class 3134 I, F Complement component 2 717
Apolipoprotein L, 3 80833
Otoferlin 9381
NAD kinase 65220
Major histocompatibility complex, class 3105 I, A Major histocompatibility complex, class 3106 I, B Hedgehog interacting protein 64399
Spermatogenesis associated, serine- 221409 rich 1 BCL2-like 13 (apoptosis facilitator) 23786
Interferon, alpha-inducible protein 27 3429
Major histocompatibility complex, class 3107 I, C Opioid growth factor receptor 11054
T-complex-associated-testis-expressed 6993 1-like 1 Major histocompatibility complex, class 3133 I, E Guanylate binding protein 1, interferon- 2633 inducible, 67kDa Bone morphogenetic protein receptor, 659 type II (serine/threonine kinase) Sorting nexin 6 58533
Type 1 tumor necrosis factor receptor 51752 shedding aminopeptidase regulator FLJ45422 protein 441140
Tripartite motif-containing 38 10475
ADP-ribosylhydrolase like 2 54936
Guanosine monophosphate reductase 2766
Hypothetical protein LOC147645 147645
Leukemia inhibitory factor receptor 3977
Lymphocyte antigen 6 complex, locus E 4061
GTP binding protein 2 54676
Fms-related tyrosine kinase 3 ligand 2323
B-factor, properdin 629
Melanoma antigen, family A, 12 4111
Hypothetical protein LOC126755 126755
Somatostatin receptor 5 6755
Creatine kinase, brain 1152
Leucyl/cystinyl aminopeptidase 4012 ADP-ribosylarginine hydrolase 141
J-type co-chaperone HSC20 150274
Hypothetical protein LOC256021 256021
Transmembrane protein 16C 63982
G protein-coupled receptor, family C, 51704 group 5, member B Colony stimulating factor 2 (granulocyte- 1437 macrophage) Torsin family 1, member B (torsin B) 27348
Platelet-activating factor receptor 5724
Chemokine (C-C motif) receptor-like 1 51554
Sterol O-acyltransferase (acyl- 6646 Coenzyme A: cholesterol acyltransferase) 1 Mitofusin 1 55669
ADP-ribosylation factor-like 10C 55207
Fibroblast growth factor 13 2258
Solute carrier family 4, sodium 8671 bicarbonate cotransporter, member 4 Mitogen-activated protein kinase 10 5602
Myelin associated glycoprotein 4099
ERO1-like (S. cerevisiae) 30001
Ankyrin repeat domain 1 (cardiac 27063 muscle) Hypothetical protein FLJ25421 150350
Histone 2, H4 8370
Histone 1, H4f 8361
Histone 1, H4i 8294
Histone 1, H4h 8365
Histone 1, H2ak 8330
Acetylcholinesterase (YT blood group) 43
Zinc finger, SWIM domain containing 5 57643
Acid phosphatase 5, tartrate resistant 54
Caspase 4, apoptosis-related cysteine 837 protease Protein kinase (cAMP-dependent, 11142 catalytic) inhibitor gamma Hypothetical protein FLJ10808 55236
Sorting nexin 7 51375
FLJ39739 protein 388685
Interleukin 17 receptor D 54756
Hypothetical protein MGC20470 143630
CD47 antigen (Rh-related antigen, 961 integrin-associated signal transducer) Cisplatin resistance associated 10903
SLIT and NTRK-like family, member 2 84631
FLJ34870 protein 401013
KIAA0469 gene product 9903
Calcium channel, voltage-dependent, 10368 gamma subunit 3 Hypothetical protein LOC163782 163782
Solute carrier family 18 (vesicular 6570 monoamine), member 1 Caspase 7, apoptosis-related cysteine 840 protease Chemokine (C-C motif) receptor 1 1230
Protein C receptor, endothelial (EPCR) 10544
HRAS-like suppressor 2 54979
Serine dehydratase-like 113675
Apolipoprotein L, 4 80832
AXL receptor tyrosine kinase 558
X 006 protein 56985
FLN29 gene product 10906
2',3'-cyclic nucleotide 3' 1267 phosphodiesterase Chromosome 7 open reading frame 6 219285