Release of Glycosyltransferase and Glycosidase Activities from Normal and Transformed Cell Lines1

Total Page:16

File Type:pdf, Size:1020Kb

Release of Glycosyltransferase and Glycosidase Activities from Normal and Transformed Cell Lines1 [CANCER RESEARCH 41, 2611-2615, July 1981J 0008-5472/81 /0041-OOOOS02.00 Release of Glycosyltransferase and Glycosidase Activities from Normal and Transformed Cell Lines1 Wayne D. Klohs,2 Ralph Mastrangelo, and Milton M. Weiser Division of Gastroenterology and Nutrition, Department of Medicine, State University of New York at Buffalo, Buffalo, New York 14215 ABSTRACT Indeed, a cancer-associated isoenzyme of serum galactosyl transferase has been reported in humans and animals with The release of galactosyltransferase, sialyltransferase, and certain malignant cancers (24, 26). Bernacki and Kim (2) and several glycosidase activities into the growth media from sev Weiser and Podolsky (34) have suggested that such increases eral normal and transformed cell lines was examined. Six of in serum glycosyltransferase levels may be the consequence the seven cell lines released galactosyltransferase into their of both an increased production and release from the tumor culture media. Only the human leukemia CCRF-CEM cells cells, perhaps through cell surface shedding of the enzymes, failed to release demonstrable galactosyltransferase activity. but the validity of this supposition has yet to be demonstrated. Release of galactosyltransferase activity into the media closely It is also not clear whether the elevated levels of circulating paralleled the growth curves for all but the BHKpy cells. These glycosyltransferases perform any molecular or physiological cells continued to release peak levels of galactosyltransferase function relative to the malignant condition. activity into the culture media after their growth had plateaued. In the present study, we examined the release of glycosyl Media galactosyltransferase activity was unaffected by Triton transferase and glycosidase activities from several normal and X-100 treatment and remained in the supernatant fraction of a transformed cell lines as part of an investigation into the nature 100,000 x g, 12-hr centrifugation, suggesting that the cells of these unbound enzymes, the mechanism by which these release galactosyltransferase in a soluble form. In contrast to enzymes are released into the medium or bloodstream, and galactosyltransferase activity, only one of the cell lines (L1210) their possible biological significance. released sialyltransferase activity in appreciable amounts. Even this level of activity was 20-fold less than that observed for galactosyltransferase in the media from L1210 cells. Of the MATERIALS AND METHODS nine glycosidase activities assayed, only N-acetylglucosamini- Cell Cultures. WI38 human embryonic lung fibroblasts (pas dase was observed in significant amounts in the media from all sage 16) (obtained from the Human Cell Culture Bank, Mason but the CCRF-CEM cells. However, W-acetylglucosaminidase Research Institute, Rockville, Md.) and HTC rat hepatoma cells release did not correlate closely with cell growth. These find (29) (generously provided by Dr. Darrell Doyle, Roswell Park ings suggest a relatively specific release of galactosyltransfer Memorial Institute, Buffalo, N. Y.) were grown in DMEM3 (As ase and A/-acetylglucosaminidase activities by cells in tissue sociated Biomedic Systems, Inc., Buffalo, N. Y.) supplemented culture. Moreover, the release of galactosyltransferase closely with 10% HI-FCS (Grand Island Biological Co., Grand Island, parallels cell growth. The significance of these released en N. Y.), 16 m.M HEPES, and 8 mw MOPS, pH 7.0. BHK-21 (C- zymes, especially to cell growth, has yet to be determined. 13) BHK fibroblasts (obtained from the American Type Culture Collection, Rockville, Md.) and the polyoma virus-transformed INTRODUCTION counterpart of BHK, BHKpy (generously provided by Dr. George Poste, Roswell Park Memorial Institute), were grown in Glycosyltransferases are enzymes that catalyze the transfer DMEM supplemented with 10% HI-FCS, 10% tryptose phos of monosaccharides from nucleotide sugars to oligosaccharide phate broth, 16 mM HEPES, and 8 mM MOPS. MDA-MB-231 chains of glycoproteins or glycolipids. They appear to be human breast tumor cell line (8) (obtained from the Human Cell located in the smooth endoplasmic reticulum (7, 31) and the Culture Bank, Mason Research Institute) was grown in DMEM Golgi apparatus (16, 32) where they participate in the biosyn supplemented with 10% HI-FCS, insulin (lO^g/ml), and corti- thesis of various glycoconjugates. A number of reports (17,19, sol (5 jug/ml). Murine leukemia L1210 cells and human leuke 20, 27, 33) have demonstrated recently the presence of gly- mia CCRF-CEM cells (12) (generously provided by Dr. Gerald cosyltransferases on the plasma membrane of several different Grindey, Roswell Park Memorial Institute) were grown in Ros cell types, and it is thought that these cell surface enzymes well Park Memorial Institute Tissue Culture Medium 1640 sup may mediate cellular recognition and adhesion (13, 28). Ele plemented with 10% HI-FCS, 16 mM HEPES, and 8 mM MOPS. vated levels of glycosyltransferases have also been observed All cells were grown in 35- x 10-mm polystyrene tissue culture in a number of animal and human tumors as compared to plates (Corning) at 37°.Cells were harvested in either 0.54 mM normal tissue or cells (2, 5), as well as in the bloodstream of EDTA or 0.25% trypsin (Grand Island Biological Co.) at various both animals and humans bearing metastatic tumors (2, 6, 15). times after plating for determination of cell number. Cells were ' This work was supported in part by American Cancer Society Grant PDT-88 counted with the use of a Model ZF Coulter Counter (Coulter and National Cancer Institute Grant CA25074 from NIH. Electronics, Inc., Hialeah, Fla.). Viability was determined by 2 To whom requests for reprints should be addressed, at Division of Gastro enterology and Nutrition, Department of Medicine, State University of New York 3 The abbreviations used are: DMEM, Dulbecco's modified Eagle's minimal at Buffalo, Clinical Center Annex, CC186, 462 Grider Street, Buffalo, N. Y. essential medium; HI-FCS, heat-inactivated fetal calf serum; HEPES, N-2-hy- 14215. droxyethylpiperazine-W-2-ethanesulfonic acid; MOPS, morpholinopropane sul- Received April 2. 1980; accepted March 24, 1981. fonic acid; BHK, baby hamster kidney. JULY 1981 2611 Downloaded from cancerres.aacrjournals.org on September 27, 2021. © 1981 American Association for Cancer Research. W. D. Klohs et al. trypan blue exclusion. Media were collected and centrifuged 2 L1210, and CCRF-CEM cells was determined over a 4-day times at 1500 x g prior to measurement of enzyme activities. growth period (Tables 1 and 2). All cell lines released significant All cell lines were routinely screened for Mycoplasma contam galactosyltransferase into their media over 4 days of growth ination. except for the human leukemia cell line CCRF-CEM (Table 1). Glycosyltransferase Assays. Sialyltransferase assays were Galactosyltransferase activity was barely detectable in the performed according to procedures described previously by media from these leukemic cells which contrasts with the Klohs et al. (18). A typical assay medium (total volume, 100 mouse leukemic cell line, L1210, where substantial galacto jul) contained 50 fi\ of cell culture medium, 20 /il of desialylated syltransferase activity was observed. With the exception of fetuin (15 mg/ml), 10 /il of 0.1 M MgCI2, 10 ¡i\of 1.0 M BHKpy cells (and CCRF-CEM cells), release of galactosyltrans cacodylate buffer (pH 7.2), and 10 ¿ilof82.2 /ivi CMP-A/-acetyl- ferase from the various cells closely paralleled the growth ["*C]neuraminic acid (specific radioactivity, 304 mCi/mmol; curve for these cell types (Chart 1). BHK cells released the Amersham Corp., Arlington Heights, III.). The assay procedure greatest amount of galactosyltransferase of all the cells tested for galactosyltransferase activities was similar to that described (Table 1). This was true not only in regard to the total galacto by Podolsky er al. (25). A stock solution of 714 juM UDP- syltransferase activity detected in the culture media, but when galactose was prepared to a final specific activity of 6.1 Ci/ expressed on a per cell basis, each BHK cell was shown to mmol by using unlabeled UDP-galactose (Sigma Chemical Co., release more galactosyltransferase activity than any of the St. Louis, Mol.) and UDP-[3H]galactose (specific radioactivity, other cell types studied (Table 3). The human breast tumor 12.3 Ci/mmol; New England Nuclear, Boston, Mass.). A typical cells, MDA-MB-231, as well as BHKpy cells, also released assay medium (total volume, 100 /il) contained 50 /il of culture substantial galactosyltransferase activity into the culture media medium, 20 /il of fetuin minus sialic acid and galactose (15 (Tables 1 and 3). The L1210, W138, and HTC cells, however, mg/ml), 10/il of 0.1 M MnCI2, 10/tl of 1.0 M cacodylate buffer, discharged one-fourth to one-fifth the galactosyltransferase pH 7.2, and 10 /il of stock UDP-galactose. Incubations for both activity as that observed for the BHK or MDA-MB-231 cells glycosyltransferase activities were carried out at 37° in a (Table 3). The release of galactosyltransferase activity for all shaker bath for 1 hr. The reaction was terminated by the the cells studied was relatively constant between 48 and 96 hr addition of 2.0 ml of 1% phosphotungstic acid in 0.5 N HCI. with the exception of the BHKpy cells (Table 3). The growth of Samples were washed twice in 10% trichloroacetic acid and these cells plateaued between 72 and 96 hr, yet the level of once in 95% ethanol:ether (2:1, v/v) and counted in a Packard media galactosyltransferase from these cells continued to in Tri-Carb liquid scintillation counter. Enzyme activities are cal crease. This observation is reflected in the data from Table 3 culated as the difference between the exogenous and endog enous activities. Table 1 Pyrophosphatase and Hydrolase Activities. To determine Release of galactosyltransferase activity from cultured normal and transformed the breakdown of CMP-sialic acid and UDP-galactose during cell lines transferase assays, incubation mixtures were deproteinized by Enzyme activity was determined in a medium (total volume.
Recommended publications
  • Download (PDF)
    Tomono et al.: Glycan evolution based on phylogenetic profiling 1 Supplementary Table S1. List of 173 enzymes that are composed of glycosyltransferases and functionally-linked glycan synthetic enzymes UniProt ID Protein Name Categories of Glycan Localization CAZy Class 1 Q8N5D6 Globoside -1,3-N -acetylgalactosaminyltransferase 1 Glycosphingolipid Golgi apparatus GT6 P16442 Histo-blood group ABO system transferase Glycosphingolipid Golgi apparatus GT6 P19526 Galactoside 2--L-fucosyltransferase 1 Glycosphingolipid Golgi apparatus GT11 Q10981 Galactoside 2--L-fucosyltransferase 2 Glycosphingolipid Golgi apparatus GT11 Q00973 -1,4 N -acetylgalactosaminyltransferase 1 Glycosphingolipid Golgi apparatus GT12 Q8NHY0 -1,4 N -acetylgalactosaminyltransferase 2 O -Glycan, N -Glycan, Glycosphingolipid Golgi apparatus GT12 Q09327 -1,4-mannosyl-glycoprotein 4--N -acetylglucosaminyltransferase N -Glycan Golgi apparatus GT17 Q09328 -1,6-mannosylglycoprotein 6--N -acetylglucosaminyltransferase A N -Glycan Golgi apparatus GT18 Q3V5L5 -1,6-mannosylglycoprotein 6--N -acetylglucosaminyltransferase B O -Glycan, N -Glycan Golgi apparatus GT18 Q92186 -2,8-sialyltransferase 8B (SIAT8-B) (ST8SiaII) (STX) N -Glycan Golgi apparatus GT29 O15466 -2,8-sialyltransferase 8E (SIAT8-E) (ST8SiaV) Glycosphingolipid Golgi apparatus GT29 P61647 -2,8-sialyltransferase 8F (SIAT8-F) (ST8SiaVI) O -Glycan Golgi apparatus GT29 Q9NSC7 -N -acetylgalactosaminide -2,6-sialyltransferase 1 (ST6GalNAcI) (SIAT7-A) O -Glycan Golgi apparatus GT29 Q9UJ37 -N -acetylgalactosaminide -2,6-sialyltransferase
    [Show full text]
  • Aberrant Sialylation in Cancer: Biomarker and Potential Target for Therapeutic Intervention?
    cancers Review Aberrant Sialylation in Cancer: Biomarker and Potential Target for Therapeutic Intervention? Silvia Pietrobono * and Barbara Stecca * Tumor Cell Biology Unit, Core Research Laboratory, Institute for Cancer Research and Prevention (ISPRO), Viale Pieraccini 6, 50139 Florence, Italy * Correspondence: [email protected] (S.P.); [email protected] (B.S.); Tel.: +39-055-7944568 (S.P.); +39-055-7944567 (B.S.) Simple Summary: Sialylation is a post-translational modification that consists in the addition of sialic acid to growing glycan chains on glycoproteins and glycolipids. Aberrant sialylation is an established hallmark of several types of cancer, including breast, ovarian, pancreatic, prostate, colorectal and lung cancers, melanoma and hepatocellular carcinoma. Hypersialylation can be the effect of increased activity of sialyltransferases and results in an excess of negatively charged sialic acid on the surface of cancer cells. Sialic acid accumulation contributes to tumor progression by several paths, including stimulation of tumor invasion and migration, and enhancing immune evasion and tumor cell survival. In this review we explore the mechanisms by which sialyltransferases promote cancer progression. In addition, we provide insights into the possible use of sialyltransferases as biomarkers for cancer and summarize findings on the development of sialyltransferase inhibitors as potential anti-cancer treatments. Abstract: Sialylation is an integral part of cellular function, governing many biological processes Citation: Pietrobono, S.; Stecca, B. including cellular recognition, adhesion, molecular trafficking, signal transduction and endocytosis. Aberrant Sialylation in Cancer: Sialylation is controlled by the levels and the activities of sialyltransferases on glycoproteins and Biomarker and Potential Target for lipids. Altered gene expression of these enzymes in cancer yields to cancer-specific alterations of Therapeutic Intervention? Cancers glycoprotein sialylation.
    [Show full text]
  • Two Arabidopsis Proteins Synthesize Acetylated Xylan Invitro
    The Plant Journal (2014) 80, 197–206 doi: 10.1111/tpj.12643 FEATURED ARTICLE Two Arabidopsis proteins synthesize acetylated xylan in vitro Breeanna R. Urbanowicz, Maria J. Pena*,~ Heather A. Moniz, Kelley W. Moremen and William S. York* Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Road, Athens, GA 30602, USA Received 4 June 2014; revised 18 July 2014; accepted 1 August 2014; published online 21 August 2014. *For correspondence (e-mails [email protected]; [email protected]). SUMMARY Xylan is the third most abundant glycopolymer on earth after cellulose and chitin. As a major component of wood, grain and forage, this natural biopolymer has far-reaching impacts on human life. This highly acetylated cell wall polysaccharide is a vital component of the plant cell wall, which functions as a molecular scaffold, pro- viding plants with mechanical strength and flexibility. Mutations that impair synthesis of the xylan backbone give rise to plants that fail to grow normally because of collapsed xylem cells in the vascular system. Phenotypic analysis of these mutants has implicated many proteins in xylan biosynthesis; however, the enzymes directly responsible for elongation and acetylation of the xylan backbone have not been unambiguously identified. Here we provide direct biochemical evidence that two Arabidopsis thaliana proteins, IRREGULAR XYLEM 10–L (IRX10-L) and ESKIMO1/TRICOME BIREFRINGENCE 29 (ESK1/TBL29), catalyze these respective processes in vi- tro. By identifying the elusive xylan synthase and establishing ESK1/TBL29 as the archetypal plant polysaccha- ride O-acetyltransferase, we have resolved two long-standing questions in plant cell wall biochemistry.
    [Show full text]
  • Multiplexed Engineering Glycosyltransferase Genes in CHO Cells Via Targeted Integration for Producing Antibodies with Diverse Complex‑Type N‑Glycans Ngan T
    www.nature.com/scientificreports OPEN Multiplexed engineering glycosyltransferase genes in CHO cells via targeted integration for producing antibodies with diverse complex‑type N‑glycans Ngan T. B. Nguyen, Jianer Lin, Shi Jie Tay, Mariati, Jessna Yeo, Terry Nguyen‑Khuong & Yuansheng Yang* Therapeutic antibodies are decorated with complex‑type N‑glycans that signifcantly afect their biodistribution and bioactivity. The N‑glycan structures on antibodies are incompletely processed in wild‑type CHO cells due to their limited glycosylation capacity. To improve N‑glycan processing, glycosyltransferase genes have been traditionally overexpressed in CHO cells to engineer the cellular N‑glycosylation pathway by using random integration, which is often associated with large clonal variations in gene expression levels. In order to minimize the clonal variations, we used recombinase‑mediated‑cassette‑exchange (RMCE) technology to overexpress a panel of 42 human glycosyltransferase genes to screen their impact on antibody N‑linked glycosylation. The bottlenecks in the N‑glycosylation pathway were identifed and then released by overexpressing single or multiple critical genes. Overexpressing B4GalT1 gene alone in the CHO cells produced antibodies with more than 80% galactosylated bi‑antennary N‑glycans. Combinatorial overexpression of B4GalT1 and ST6Gal1 produced antibodies containing more than 70% sialylated bi‑antennary N‑glycans. In addition, antibodies with various tri‑antennary N‑glycans were obtained for the frst time by overexpressing MGAT5 alone or in combination with B4GalT1 and ST6Gal1. The various N‑glycan structures and the method for producing them in this work provide opportunities to study the glycan structure‑and‑function and develop novel recombinant antibodies for addressing diferent therapeutic applications.
    [Show full text]
  • Induced Structural Changes in a Multifunctional Sialyltransferase
    Biochemistry 2006, 45, 2139-2148 2139 Cytidine 5′-Monophosphate (CMP)-Induced Structural Changes in a Multifunctional Sialyltransferase from Pasteurella multocida†,‡ Lisheng Ni,§ Mingchi Sun,§ Hai Yu,§ Harshal Chokhawala,§ Xi Chen,*,§ and Andrew J. Fisher*,§,| Department of Chemistry and the Section of Molecular and Cellular Biology, UniVersity of California, One Shields AVenue, DaVis, California 95616 ReceiVed NoVember 23, 2005; ReVised Manuscript ReceiVed December 19, 2005 ABSTRACT: Sialyltransferases catalyze reactions that transfer a sialic acid from CMP-sialic acid to an acceptor (a structure terminated with galactose, N-acetylgalactosamine, or sialic acid). They are key enzymes that catalyze the synthesis of sialic acid-containing oligosaccharides, polysaccharides, and glycoconjugates that play pivotal roles in many critical physiological and pathological processes. The structures of a truncated multifunctional Pasteurella multocida sialyltransferase (∆24PmST1), in the absence and presence of CMP, have been determined by X-ray crystallography at 1.65 and 2.0 Å resolutions, respectively. The ∆24PmST1 exists as a monomer in solution and in crystals. Different from the reported crystal structure of a bifunctional sialyltransferase CstII that has only one Rossmann domain, the overall structure of the ∆24PmST1 consists of two separate Rossmann nucleotide-binding domains. The ∆24PmST1 structure, thus, represents the first sialyltransferase structure that belongs to the glycosyltransferase-B (GT-B) structural group. Unlike all other known GT-B structures, however, there is no C-terminal extension that interacts with the N-terminal domain in the ∆24PmST1 structure. The CMP binding site is located in the deep cleft between the two Rossmann domains. Nevertheless, the CMP only forms interactions with residues in the C-terminal domain.
    [Show full text]
  • Comparative Analysis of High-Throughput Assays of Family-1 Plant Glycosyltransferases
    International Journal of Molecular Sciences Article Comparative Analysis of High-Throughput Assays of Family-1 Plant Glycosyltransferases Kate McGraphery and Wilfried Schwab * Biotechnology of Natural Products, Technische Universität München, 85354 Freising, Germany; [email protected] * Correspondence: [email protected]; Tel.: +49-8161-712-912; Fax: +49-8161-712-950 Received: 27 January 2020; Accepted: 21 March 2020; Published: 23 March 2020 Abstract: The ability of glycosyltransferases (GTs) to reduce volatility, increase solubility, and thus alter the bioavailability of small molecules through glycosylation has attracted immense attention in pharmaceutical, nutraceutical, and cosmeceutical industries. The lack of GTs known and the scarcity of high-throughput (HTP) available methods, hinders the extrapolation of further novel applications. In this study, the applicability of new GT-assays suitable for HTP screening was tested and compared with regard to harmlessness, robustness, cost-effectiveness and reproducibility. The UDP-Glo GT-assay, Phosphate GT Activity assay, pH-sensitive GT-assay, and UDP2-TR-FRET assay were applied and tailored to plant UDP GTs (UGTs). Vitis vinifera (UGT72B27) GT was subjected to glycosylation reaction with various phenolics. Substrate screening and kinetic parameters were evaluated. The pH-sensitive assay and the UDP2-TR-FRET assay were incomparable and unsuitable for HTP plant GT-1 family UGT screening. Furthermore, the UDP-Glo GT-assay and the Phosphate GT Activity assay yielded closely similar and reproducible KM, vmax, and kcat values. Therefore, with the easy experimental set-up and rapid readout, the two assays are suitable for HTP screening and quantitative kinetic analysis of plant UGTs. This research sheds light on new and emerging HTP assays, which will allow for analysis of novel family-1 plant GTs and will uncover further applications.
    [Show full text]
  • Sialyltransferase of the 13762 Rat Mammary Ascites Tumor Cells1
    [CANCER RESEARCH 44, 1148-1152, March 1984] Sialyltransferase of the 13762 Rat Mammary Ascites Tumor Cells1 ThérèsePrattand Anne P. Sherblom2 Department of Biochemistry, University of Maine, Orano, Maine 04469 ABSTRACT The MAT-B1 and MAT-C1 sublines of the 13762 rat mammary adenocarcinoma are a suitable system for studying sialic acid The MAT-B1 and MAT-C1 ascites sublines of the 13762 rat metabolism. The 2 cell lines, originally derived from the same mammary adenocarcinoma differ in morphology, agglutinability solid tumor, show marked differences in ability to be transplanted with concanavalin A, and xenotransplantability. Both cell lines into mice, agglutinability with concanavalin A, and total sialic acid contain a major mucin-type glycoprotein, but the MAT-C1 (xen- content (19). Greater than 70% of the protein-bound sialic acid otransplantable) subline contains a 3-fold-greater content of sialic in both cell lines is due to a high-molecular-weight mucin-type acid on the glycoprotein than does the MAT-B1 (nonxeno- glycoprotein, ASGP-1 (16). The 0-linked chains have a core transplantable) subline. structure Gal(01-»4)GlcNAc(01-»6)[Gal(|31-»3)]GalNAc3 where The present work indicates that whole cells of both lines both galactose residues may be substituted with sialic acids incorporate radioactivity from labeled CMP-sialic acid into a linked («2—>3).4TheMAT-C1 subline contains much more of component which comigrates with the major glycoprotein by disialylated hexasaccharide than does the MAT-B1 subline,4 sodium dodecyl sulfate polyacrylamide gel electrophoresis, and whereas the MAT-B1 oligosaccharides are predominantly neutral that label incorporated by MAT-B1 cells is released by alkaline- but may contain sulfate as well as sialic acid (17).
    [Show full text]
  • Supplementary Information
    Supplementary information (a) (b) Figure S1. Resistant (a) and sensitive (b) gene scores plotted against subsystems involved in cell regulation. The small circles represent the individual hits and the large circles represent the mean of each subsystem. Each individual score signifies the mean of 12 trials – three biological and four technical. The p-value was calculated as a two-tailed t-test and significance was determined using the Benjamini-Hochberg procedure; false discovery rate was selected to be 0.1. Plots constructed using Pathway Tools, Omics Dashboard. Figure S2. Connectivity map displaying the predicted functional associations between the silver-resistant gene hits; disconnected gene hits not shown. The thicknesses of the lines indicate the degree of confidence prediction for the given interaction, based on fusion, co-occurrence, experimental and co-expression data. Figure produced using STRING (version 10.5) and a medium confidence score (approximate probability) of 0.4. Figure S3. Connectivity map displaying the predicted functional associations between the silver-sensitive gene hits; disconnected gene hits not shown. The thicknesses of the lines indicate the degree of confidence prediction for the given interaction, based on fusion, co-occurrence, experimental and co-expression data. Figure produced using STRING (version 10.5) and a medium confidence score (approximate probability) of 0.4. Figure S4. Metabolic overview of the pathways in Escherichia coli. The pathways involved in silver-resistance are coloured according to respective normalized score. Each individual score represents the mean of 12 trials – three biological and four technical. Amino acid – upward pointing triangle, carbohydrate – square, proteins – diamond, purines – vertical ellipse, cofactor – downward pointing triangle, tRNA – tee, and other – circle.
    [Show full text]
  • LN-EPC Vs CEPC List
    Supplementary Information Table 5. List of genes upregulated on LN-EPC (LCB represents the variation of gene expression comparing LN-EPC with CEPC) Gene dystrophin (muscular dystrophy, Duchenne and Becker types) regulator of G-protein signalling 13 chemokine (C-C motif) ligand 8 vascular cell adhesion molecule 1 matrix metalloproteinase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase) chemokine (C-C motif) ligand 2 solute carrier family 2 (facilitated glucose/fructose transporter), member 5 eukaryotic translation initiation factor 1A, Y-linked regulator of G-protein signalling 1 ubiquitin D chemokine (C-X-C motif) ligand 3 transcription factor 4 chemokine (C-X-C motif) ligand 13 (B-cell chemoattractant) solute carrier family 7, (cationic amino acid transporter, y+ system) member 11 transcription factor 4 apolipoprotein D RAS guanyl releasing protein 3 (calcium and DAG-regulated) matrix metalloproteinase 1 (interstitial collagenase) DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked /// DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked transcription factor 4 regulator of G-protein signalling 1 B-cell linker interleukin 8 POU domain, class 2, associating factor 1 CD24 antigen (small cell lung carcinoma cluster 4 antigen) Consensus includes gb:AK000168.1 /DEF=Homo sapiens cDNA FLJ20161 fis, clone COL09252, highly similar to L33930 Homo sapiens CD24 signal transducer mRNA. /FEA=mRNA /DB_XREF=gi:7020079 /UG=Hs.332045 Homo sapiens cDNA FLJ20161 fis, clone COL09252, highly similar to L33930 Homo sapiens CD24 signal transducer mRNA
    [Show full text]
  • Protein & Peptide Letters
    696 Send Orders for Reprints to [email protected] Protein & Peptide Letters, 2017, 24, 696-709 REVIEW ARTICLE ISSN: 0929-8665 eISSN: 1875-5305 Impact Factor: 1.068 Glycan Phosphorylases in Multi-Enzyme Synthetic Processes BENTHAM Editor-in-Chief: SCIENCE Ben M. Dunn Giulia Pergolizzia, Sakonwan Kuhaudomlarpa, Eeshan Kalitaa,b and Robert A. Fielda,* aDepartment of Biological Chemistry, John Innes Centre, Norwich Research Park, Norwich NR4 7UH, UK; bDepartment of Molecular Biology and Biotechnology, Tezpur University, Napaam, Tezpur, Assam -784028, India Abstract: Glycoside phosphorylases catalyse the reversible synthesis of glycosidic bonds by glyco- A R T I C L E H I S T O R Y sylation with concomitant release of inorganic phosphate. The equilibrium position of such reac- tions can render them of limited synthetic utility, unless coupled with a secondary enzymatic step Received: January 17, 2017 Revised: May 24, 2017 where the reaction lies heavily in favour of product. This article surveys recent works on the com- Accepted: June 20, 2017 bined use of glycan phosphorylases with other enzymes to achieve synthetically useful processes. DOI: 10.2174/0929866524666170811125109 Keywords: Phosphorylase, disaccharide, α-glucan, cellodextrin, high-value products, biofuel. O O 1. INTRODUCTION + HO OH Glycoside phosphorylases (GPs) are carbohydrate-active GH enzymes (CAZymes) (URL: http://www.cazy.org/) [1] in- H2O O GP volved in the formation/cleavage of glycosidic bond together O O GT O O + HO O + HO with glycosyltransferase (GT) and glycoside hydrolase (GH) O -- NDP OPO3 NDP -- families (Figure 1) [2-6]. GT reactions favour the thermody- HPO4 namically more stable glycoside product [7]; however, these GS R enzymes can be challenging to work with because of their O O + HO current limited availability and relative instability, along R with the expense of sugar nucleotide substrates [7].
    [Show full text]
  • 1471-2164-8-41.Pdf
    BMC Genomics BioMed Central Research article Open Access Loss of Parp-1 affects gene expression profile in a genome-wide manner in ES cells and liver cells Hideki Ogino1,2, Tadashige Nozaki2, Akemi Gunji2, Miho Maeda3, Hiroshi Suzuki4, Tsutomu Ohta5, Yasufumi Murakami3, Hitoshi Nakagama2, Takashi Sugimura2 and Mitsuko Masutani*1,2 Address: 1ADP-ribosylation in Oncology Project, National Cancer Center Research Institute, 1-1, Tsukiji 5-chome, Chuo-ku, Tokyo 104-0045, Japan, 2Biochemistry Division, National Cancer Center Research Institute, 1-1, Tsukiji 5-chome, Chuo-ku, Tokyo 104-0045, Japan, 3Department of Biological Science & Technology, Faculty of Industrial Science & Technology, Tokyo University of Science, 2641, Yamazaki, Noda, Chiba 278- 8510, Japan, 4Chugai Pharmaceutical Co Ltd., 1-135, Komakado, Gotemba, Shizuoka, 412-0038, Japan and 5Center for Medical Genomics, National Cancer Center Research Institute, 1-1, Tsukiji 5-chome, Chuo-ku, Tokyo 104-0045, Japan Email: Hideki Ogino - [email protected]; Tadashige Nozaki - [email protected]; Akemi Gunji - [email protected]; Miho Maeda - [email protected]; Hiroshi Suzuki - [email protected]; Tsutomu Ohta - [email protected]; Yasufumi Murakami - [email protected]; Hitoshi Nakagama - [email protected]; Takashi Sugimura - [email protected]; Mitsuko Masutani* - [email protected] * Corresponding author Published: 7 February 2007 Received: 5 August 2006 Accepted: 7 February 2007 BMC Genomics 2007, 8:41 doi:10.1186/1471-2164-8-41 This article is available from: http://www.biomedcentral.com/1471-2164/8/41 © 2007 Ogino et al; licensee BioMed Central Ltd.
    [Show full text]
  • Advances in Understanding Glycosyltransferases from A
    Available online at www.sciencedirect.com ScienceDirect Advances in understanding glycosyltransferases from a structural perspective Tracey M Gloster Glycosyltransferases (GTs), the enzymes that catalyse commonly activated nucleotide sugars, but can also be glycosidic bond formation, create a diverse range of lipid phosphates and unsubstituted phosphate. saccharides and glycoconjugates in nature. Understanding GTs at the molecular level, through structural and kinetic GTs have been classified by sequence homology into studies, is important for gaining insights into their function. In 96 families in the Carbohydrate Active enZyme data- addition, this understanding can help identify those enzymes base (CAZy) [1 ]. The CAZy database provides a highly which are involved in diseases, or that could be engineered to powerful predictive tool, as the structural fold and synthesize biologically or medically relevant molecules. This mechanism of action are invariant in most of the review describes how structural data, obtained in the last 3–4 families. Therefore, where the structure and mechanism years, have contributed to our understanding of the of a GT member for a given family has been reported, mechanisms of action and specificity of GTs. Particular some assumptions about other members of the family highlights include the structure of a bacterial can be made. Substrate specificity, however, is more oligosaccharyltransferase, which provides insights into difficult to predict, and requires experimental charac- N-linked glycosylation, the structure of the human O-GlcNAc terization of individual GTs. Determining both the transferase, and the structure of a bacterial integral membrane sugar donor and acceptor for a GT of unknown function protein complex that catalyses the synthesis of cellulose, the can be challenging, and is one of the reasons there are most abundant organic molecule in the biosphere.
    [Show full text]