Reduced Calorie D-Aldohexose Monosaccharides
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Electronic Supplementary Material (ESI) for Chemical Science. This journal is © The Royal Society of Chemistry 2019 Electronic Supplementary Information Poly(ionic liquid)s as a Distinct Receptor Material to Create Highly- Integrated Sensing Platform for Efficiently Identifying a Myriad of Saccharides Wanlin Zhang, Yao Li, Yun Liang, Ning Gao, Chengcheng Liu, Shiqiang Wang, Xianpeng Yin, and Guangtao Li* *Corresponding authors: Guangtao Li ([email protected]) S1 Contents 1. Experimental Section (Page S4-S6) Materials and Characterization (Page S4) Experimental Details (Page S4-S6) 2. Figures and Tables (Page S7-S40) Fig. S1 SEM image of silica colloidal crystal spheres and PIL inverse opal spheres. (Page S7) Fig. S2 Adsorption isotherm of PIL inverse opal. (Page S7) Fig. S3 Dynamic mechanical analysis and thermal gravimetric analysis of PIL materials. (Page S7) Fig. S4 Chemical structures of 23 saccharides. (Page S8) Fig. S5 The counteranion exchange of PIL photonic spheres from Br- to DCA. (Page S9) Fig. S6 Reflection and emission spectra of spheres for saccharides. (Page S9) Table S1 The jack-knifed classification on single-sphere array for 23 saccharides. (Page S10) Fig. S7 Lower detection concentration at 10 mM of the single-sphere array. (Page S11) Fig. S8 Lower detection concentration at 1 mM of the single-sphere array. (Page S12) Fig. S9 PIL sphere exhibiting great pH robustness within the biological pH range. (Page S12) Fig. S10 Exploring the tolerance of PIL spheres to different conditions. (Page S13) Fig. S11 Exploring the reusability of PIL spheres. (Page S14) Fig. S12 Responses of spheres to sugar alcohols. (Page S15) Fig. -
Supporting Online Material
1 SUPPLEMENTARY MATERIAL 2 The glycan alphabet is not universal: a hypothesis 3 4 Jaya Srivastava1*, P. Sunthar2 and Petety V. Balaji1 5 6 1Department of Biosciences and Bioengineering, Indian Institute of 7 Technology Bombay, Powai, Mumbai 400076, India 8 9 2Department of Chemical Engineering, Indian Institute of Technology 10 Bombay, Powai, Mumbai 400076, India 11 12 *Corresponding author 13 Email: [email protected] 1 14 CONTENTS Data Description Figure S1 Number of organisms with different number of strains sequenced Figure S2 Biosynthesis pathways Figure S3 Proteome sizes for different number of monosaccharides Figure S4 Prevalence of monosaccharides in species versus that in genomes Figure S5 Bit score distribution plots for hits of various pairs of profiles Table S1 Tools and databases used in this study References References cited in Table S1 Table S2 Comparison of the precursor and nucleotide used for the biosynthesis of two enantiomers of a monosaccharide Flowchart S1 Procedure used to generate HMM profiles Flowchart S2 Precedence rules for assigning annotation to proteins that are hits to two or more profiles and/or BLASTp queries References References to the research articles which describe the pathways (or enzymes of the pathways) of monosaccharide biosynthesis. These formed the basis for generating HMM profiles and choosing BLASTp queries. 15 16 MS-EXCEL file provided separately: Supplementary Data.xlsx 17 Worksheet1 Details of HMM profiles Worksheet2 Details of BLASTp queries Worksheet3 Prevalence of monosaccharides in genomes / species Worksheet4 Abbreviated names of monosaccharides Worksheet5 Enzyme types, enzymes and monosaccharide groups Worksheet6 Precursors of various monosaccharides 18 2 19 Figure S1 The number of species for which different number of strains are sequenced. -
Converting Galactose Into the Rare Sugar Talose with Cellobiose 2-Epimerase As Biocatalyst
molecules Article Converting Galactose into the Rare Sugar Talose with Cellobiose 2-Epimerase as Biocatalyst Stevie Van Overtveldt, Ophelia Gevaert, Martijn Cherlet, Koen Beerens and Tom Desmet * Centre for Synthetic Biology, Faculty of Bioscience Engineering, Ghent University, Coupure Links 653, 9000 Gent, Belgium; [email protected] (S.V.O.); [email protected] (O.G.); [email protected] (M.C.); [email protected] (K.B.) * Correspondence: [email protected]; Tel.: +32-9264-9920 Academic Editors: Giorgia Oliviero and Nicola Borbone Received: 17 September 2018; Accepted: 29 September 2018; Published: 1 October 2018 Abstract: Cellobiose 2-epimerase from Rhodothermus marinus (RmCE) reversibly converts a glucose residue to a mannose residue at the reducing end of β-1,4-linked oligosaccharides. In this study, the monosaccharide specificity of RmCE has been mapped and the synthesis of D-talose from D-galactose was discovered, a reaction not yet known to occur in nature. Moreover, the conversion is industrially relevant, as talose and its derivatives have been reported to possess important antimicrobial and anti-inflammatory properties. As the enzyme also catalyzes the keto-aldo isomerization of galactose to tagatose as a minor side reaction, the purity of talose was found to decrease over time. After process optimization, 23 g/L of talose could be obtained with a product purity of 86% and a yield of 8.5% (starting from 4 g (24 mmol) of galactose). However, higher purities and concentrations can be reached by decreasing and increasing the reaction time, respectively. In addition, two engineering attempts have also been performed. -
WO 2013/070444 Al 16 May 2013 (16.05.2013) W P O P C T
(12) INTERNATIONAL APPLICATION PUBLISHED UNDER THE PATENT COOPERATION TREATY (PCT) (19) World Intellectual Property Organization International Bureau (10) International Publication Number (43) International Publication Date WO 2013/070444 Al 16 May 2013 (16.05.2013) W P O P C T (51) International Patent Classification: (81) Designated States (unless otherwise indicated, for every A23G 4/00 (2006.01) kind of national protection available): AE, AG, AL, AM, AO, AT, AU, AZ, BA, BB, BG, BH, BN, BR, BW, BY, (21) International Application Number: BZ, CA, CH, CL, CN, CO, CR, CU, CZ, DE, DK, DM, PCT/US20 12/062043 DO, DZ, EC, EE, EG, ES, FI, GB, GD, GE, GH, GM, GT, (22) International Filing Date: HN, HR, HU, ID, IL, IN, IS, JP, KE, KG, KM, KN, KP, 26 October 2012 (26.10.2012) KR, KZ, LA, LC, LK, LR, LS, LT, LU, LY, MA, MD, ME, MG, MK, MN, MW, MX, MY, MZ, NA, NG, NI, (25) Filing Language: English NO, NZ, OM, PA, PE, PG, PH, PL, PT, QA, RO, RS, RU, (26) Publication Language: English RW, SC, SD, SE, SG, SK, SL, SM, ST, SV, SY, TH, TJ, TM, TN, TR, TT, TZ, UA, UG, US, UZ, VC, VN, ZA, (30) Priority Data: ZM, ZW. 61/556,546 7 November 20 11 (07. 11.201 1) US (84) Designated States (unless otherwise indicated, for every (71) Applicant (for all designated States except US): WVI. kind of regional protection available): ARIPO (BW, GH, WRIGLEY JR. COMPANY [US/US]; 1132 Blackhawk GM, KE, LR, LS, MW, MZ, NA, RW, SD, SL, SZ, TZ, Street, Chicago, IL 60642 (US). -
Screening of Candidate Substrates and Coupling Ions of Transporters By
TOOLS AND RESOURCES Screening of candidate substrates and coupling ions of transporters by thermostability shift assays Homa Majd1†, Martin S King1†, Shane M Palmer1, Anthony C Smith1, Liam DH Elbourne2, Ian T Paulsen2, David Sharples3,4, Peter JF Henderson3,4, Edmund RS Kunji1* 1Medical Research Council Mitochondrial Biology Unit, University of Cambridge, Cambridge, United Kingdom; 2Department of Molecular Sciences, Macquarie University, Sydney, Australia; 3Astbury Centre for Structural Molecular Biology, University of Leeds, Leeds, United Kingdom; 4School of Biomedical Sciences, University of Leeds, Leeds, United Kingdom Abstract Substrates of most transport proteins have not been identified, limiting our understanding of their role in physiology and disease. Traditional identification methods use transport assays with radioactive compounds, but they are technically challenging and many compounds are unavailable in radioactive form or are prohibitively expensive, precluding large- scale trials. Here, we present a high-throughput screening method that can identify candidate substrates from libraries of unlabeled compounds. The assay is based on the principle that transport proteins recognize substrates through specific interactions, which lead to enhanced stabilization of the transporter population in thermostability shift assays. Representatives of three different transporter (super)families were tested, which differ in structure as well as transport and ion coupling mechanisms. In each case, the substrates were identified correctly from a large set of *For correspondence: chemically related compounds, including stereo-isoforms. In some cases, stabilization by substrate [email protected] binding was enhanced further by ions, providing testable hypotheses on energy coupling †These authors contributed mechanisms. equally to this work DOI: https://doi.org/10.7554/eLife.38821.001 Competing interests: The authors declare that no competing interests exist. -
Monosaccharides: a Tof-SIMS Reference Accession #: 01592, 01593, 01594, 01595, 01596, 01597, 01598, Spectra Database
Monosaccharides: A ToF-SIMS reference Accession #: 01592, 01593, 01594, 01595, 01596, 01597, 01598, spectra database. II. Positive polarity 01599, 01600, 01601, 01602, a) 01603, 01604, 01605, 01606, Laetitia Bernard, Rowena Crockett, and Maciej Kawecki 01607, 01608, 01609, 01610 Laboratory of Nanoscale Materials Science, Empa, CH-8600 Dübendorf, Switzerland Technique: SIMS (Received 20 August 2019; accepted 30 October 2019; published 3 December 2019) Host Material: Silicon (100) wafer The number of time-of-flight secondary ion mass spectrometry studies on biological tissues and Instrument: IONTOF TOF-SIMS.5 cells has strongly increased since the development of primary ion sources that allow not only ele- Major Species in Spectra: C, H, O, (N) mental but also molecular analysis. Substantial fragmentation during ionic bombardment results in a Minor Species in Spectra: Na, K large number of peaks, rendering data analysis complex. Complete and trustable sets of reference spectra for the main biological building blocks, i.e., amino acids, monosaccharides, fatty acids, and Published Spectra: 19 nucleotides, are required. This work aims to provide an accurate and extensive library of reference Spectra in Electronic Record: 19 + spectra for monosaccharides, measured with the Bi3 primary ion. Here (Paper II), the positive polar- Published Figures: 20 ity spectra and lists of associated characteristic fragments are presented. Published by the AVS. Spectral Category: Reference https://doi.org/10.1116/1.5125103 Keywords: ToF-SIMS, carbohydrate, sugar, monosaccharide, mass spectrometry, fragmentation INTRODUCTION Fluka and all others from Sigma Aldrich. Each powder was dissolved in freshly de-ionized H2O (resistivity >18.2 MΩ cm) Monosaccharides are the building blocks of structural polymers at a concentration of 0.1M. -
25 05.Html.Ppt [Read-Only]
25.5 A Mnemonic for Carbohydrate Configurations The Eight D-Aldohexoses CH O H OH CH2OH The Eight D-Aldohexoses All CH O Altruists Gladly Make Gum In H OH Gallon CH2OH Tanks The Eight D-Aldohexoses All Allose CH O Altruists Altrose Gladly Glucose Make Mannose Gum Gulose In Idose H OH Gallon Galactose CH2OH Tanks Talose The Eight D-Aldohexoses Allose CH O Altrose Glucose Mannose Gulose Idose H OH Galactose CH2OH Talose The Eight D-Aldohexoses Allose CH O Altrose Glucose Mannose Gulose H OH Idose H OH Galactose CH2OH Talose The Eight D-Aldohexoses Allose CH O Altrose Glucose Mannose Gulose HO H Idose H OH Galactose CH2OH Talose The Eight D-Aldohexoses Allose CH O Altrose Glucose Mannose Gulose H OH Idose H OH Galactose CH2OH Talose The Eight D-Aldohexoses Allose CH O Altrose Glucose Mannose H OH Gulose H OH Idose H OH Galactose CH2OH Talose The Eight D-Aldohexoses Allose CH O Altrose Glucose Mannose HO H Gulose H OH Idose H OH Galactose CH2OH Talose The Eight D-Aldohexoses Allose CH O Altrose Glucose Mannose Gulose HO H Idose H OH Galactose CH2OH Talose The Eight D-Aldohexoses Allose CH O Altrose Glucose Mannose H OH Gulose HO H Idose H OH Galactose CH2OH Talose The Eight D-Aldohexoses Allose CH O Altrose Glucose Mannose HO H Gulose HO H Idose H OH Galactose CH2OH Talose The Eight D-Aldohexoses Allose CH O Altrose Glucose Mannose H OH Gulose H OH Idose H OH Galactose CH2OH Talose The Eight D-Aldohexoses Allose CH O Altrose Glucose H OH Mannose H OH Gulose H OH Idose H OH Galactose CH2OH Talose The Eight D-Aldohexoses Allose CH O Altrose -
United States Patent (19 11) 4,312,979 Takemoto Et Al
United States Patent (19 11) 4,312,979 Takemoto et al. 45 Jan. 26, 1982 54 POLYSACCHARIDES CONTAINING 58) Field of Search ......................... 536/1, 18, 114, 4; ALLOSE 435/101 (75) Inventors: Hisao Takemoto; Tatsuo Igarashi, (56) References Cited both of Shin-Nanyo, Japan U.S. PATENT DOCUMENTS 73 Assignee: Toyo Soda Manufacturing Co., Ltd., 3,711,462 l/1973 Abdo et al. ............................. 536/1 Tokyo, Japan 4,186,025 l/1980 Kang et al. ............................. 536/1 Primary Examiner-Johnnie R. Brown (21) Appl. No.: 30,444 Attorney, Agent, or Firm-Scully, Scott, Murphy & Presser 22 Filed: Apr. 16, 1979 57 ABSTRACT 30 Foreign Application Priority Data A new polysaccharide including allose as a constituent Apr. 20, 1978 JP Japan .................................. 53.45918 sugar and further characterized by galactose as a major Dec. 5, 1978 JP Japan ................................ 53-149715 constituent sugar is described. The polysaccharide is produced extracellularly by cultivation of Pseudomonas 51) Int. Cl. ............................................... CO7H1/08 viscogena strains in nutrient medium. 52 U.S. C. ...... 0 a a 4 536/1; 435/72; 435/101; 536/114 6 Claims, 2 Drawing Figures U.S. Patent Jan. 26, 1982 Sheet 1 of 2 4,312,979 8 O O Sn Cd O ar - O - 3 CD won L Cd O CO ve O Cd Cd cN O O O N O O o O o O O. d o o O a. 3 c) do N. ud to at Y on 9 (%) AONWLLIWSNW U.S. Patent Jan. 26, 1982 Sheet 2 of 2 4,312,979 3 s 8 un co, t OO O) O S s S 8 & O O O O O r ONWSOS9W 4,312,979 1. -
Biochemistry Introductory Lecture Dr
Biochemistry Introductory lecture Dr. Munaf S. Daoud Carbohydrates (CHO) Definition: Aldehyde or Ketone derivatives of the higher polyhydric alcohols or compounds which yield these derivatives on hydrolysis. Classification: (mono, di, oligo, poly) saccharide. Monosaccharides: Can be classified as trioses, tetroses, pentoses, hexoses and heptoses depending upon the number of carbon atoms, and as aldoses or ketoses, depending upon whether they have an aldehyde or ketone group. Aldehyde (-CHO) Aldoses Ketone (-C=O) Ketoses Polysaccharides (glycans): Homopolysaccharides (homoglycans): e.g. starch, glycogen, inulin, cellulose, dextrins, dextrans. Heteropolysaccharides (heteroglycans): e.g. mucopolysaccharides (MPS) or glycosaminoglycans. Function of CHO: 1) Chief source of energy (immediate and stored energy). 2) Constituent of compound lipids and conjugated protein. 3) Structural element like cellulose. 4) Drugs like cardiac glycosides and antibodies. 5) Lactating mammary gland (Lactose in milk). 6) Synthesis of other substances like fatty acids, cholesterol, amino acids…etc. by their degradation products. 7) Constituent of mucopolysaccharides. 1 1) Stereo-isomerism Stereo-isomers: D-form, L-form 2) Optical isomers (optical activity) Enantiomers: dextrorotatory (d or + sign) Levorotatory (l or – sign) Racemic (d l) 3) Cyclic structures or open chain 4) Anomers and Anomeric carbon OH on carbon number 1, if below the plane then its -form, if above the plane then -form. Mutarotation: the changes of the initial optical rotation that takes place -
REPORTS Two-Step Synthesis of Carbohydrates
R ESEARCH A RTICLES and Mgm1 have been demonstrated and in- additional evolutionary connection between 10. More information about Fzo1 is available at volve the outer membrane fusion protein Ugo1 DRPs and endosymbiotic organelles is that their http://db.yeastgenome.org/cgi-bin/SGD/homolog/ nrHomolog?locusϭYBR179C#summary. (7, 8). The exact nature of the interactions be- division also has evolved to require the action of 11. G. J. Praefcke, H. T. McMahon, Nature Rev. Mol. Cell tween Fzo1, Ugo1, and Mgm1 and their specif- a DRP (25). Biol. 5, 133 (2004). ic roles in mitochondrial fusion remain largely DRPs most commonly have been shown to 12. S. Frank et al., Dev. Cell 1, 515 (2001). unknown. However, Ugo1 functions as an function in membrane fission events, such as 13. M. Karbowski et al., J. Cell Biol. 159, 931 (2002). 14. M. Karbowski et al., J. Cell Biol. 164, 493 (2004). adaptor between Fzo1 and Mgm1 (18). Fzo1 mitochondrial and chloroplast division and en- 15. C. Alexander et al., Nature Genet. 26, 211 (2000). interactions with inner membrane components docytosis (26). However, the actions of two 16. C. Delettre et al., Nature Genet. 26, 207 (2000). may be required in a mechanical manner for the DRPs, Fzo1 on the outer membrane and Mgm1 17. S. Zuchner et al., Nature Genet. 36, 449 (2004). formation of regions of close inner and outer on the inner membrane, are required for mito- 18. H. Sesaki, R. E. Jensen, J. Biol. Chem. 279, 28298 (2004). 19. Materials and methods are available as supporting membrane contact within mitochondria. -
Note Solubility of D-Galactose, D-Talose, and D-Tagatose In
_ Food Science and Technology Research, 21 (6), 801 803, 2015 Copyright © 2015, Japanese Society for Food Science and Technology doi: 10.3136/fstr.21.801 http://www.jsfst.or.jp Note Solubility of D-Galactose, D-Talose, and D-Tagatose in Aqueous Ethanol at Low Temperature * Da-Ming GAO, Takashi KOBAYASHI and Shuji ADACHI Division of Food Science and Biotechnology, Graduate School of Agriculture, Kyoto University, Sakyo-ku, Kyoto 606-8502, Japan Received June 14, 2015 ; Accepted August 20, 2015 _ The solubility of D-galactose, D-tagatose, and D-talose in aqueous ethanol (20 80 wt%) was measured in _ the temperature range of 30℃ to 20℃. The solubility of each sugar decreased upon increasing the ethanol concentration and decreasing the temperature. The solubility of D-talose and D-tagatose was higher than that of D-galactose under all conditions. The temperature dependence of the solubility of each hexose can be expressed by the van’t Hoff equation. The dissolution enthalpy of each hexose decreased upon increasing the ethanol concentration. The dissolution enthalpy of D-talose was higher than that of D-galactose and D-tagatose. Keywords: D-galactose, D-talose, D-tagatose, solubility, aqueous ethanol Introduction Therefore, to reduce the load on the separation process, decreasing D-Tagatose and D-talose, both of which are rare sugars, have the temperature or increasing the ethanol concentration for many important uses such as food additives to improve health and precipitating desirable or undesirable components before extend life span (Levin et al., 1995; Lu et al., 2008) and raw chromatographic separation is considered a possible solution as the materials to synthesize value-added products (Baer, 1962; Yu and first step in the purification process. -
D-TAGATOSE Chemical and Technical Assessment (CTA) First Draft Prepared by Yoko Kawamura, Xxx
Chemical and Technical Assessment 61st JECFA D-TAGATOSE Chemical and Technical Assessment (CTA) First draft prepared by Yoko Kawamura, xxx ©FAO 2004 1 Summary D-Tagatose is a ketohexose, an epimer of D-fructose isomerised at C-4. It was identified as a component of a gum exudate of the cacao tree (Sterculia setigera) and also detected as a component of an oligosaccharide in lichens of the Rocella species. In the bacterial metabolism of lactose, it may be formed from D-galactose by enzymatic isomerization catalyzed by L-arabinose isomerase under alkaline conditions in the presence of calcium. It is as virtually odourless, white or almost white, non-hygroscopic crystals and it has almost same sweetness as sucrose and less than half the calories of sucrose. Functional uses of D-tagatose as food additives are used as sweetener, texturizer, stabilizer, humectant, and formulation aid. D-Tagatose was evaluated at 55th JECFA (2000), but an ADI could not be allocated. At 57th JECFA (2001) an ADI of 0-80 mg/kg bw was established. Current JECFA specifications for D-tagatose were prepared at the 55th JECFA (2001), maintained at 57th JECFA and published in FNP 52 Add 9 (2001). In the light of additional toxicological data, an ADI and specifications were reviewed at 61st JECFA (2003) and they were maintained. 2 Description D-Tagatose occurs as virtually odorless, white or almost white, non-hygroscopic crystals and it has almost same sweetness as sucrose. 3 Manufacturing 3.1 Raw materials Lactose (food-grade), hydrochloric acid (food-grade), calcium hydroxide (technical-grade), sulfuric acid (technical-grade), immobilized lactase, ion exchange resins 3.2 Method of manufacture D-Tagatose is produced from lactose in a two-step process.