The Carbohydrates
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Redox and Complexation Chemistry of the Crvi/Crv–D-Galacturonic Acid System
Redox and complexation chemistry of the CrVI/CrV–D-galacturonic acid system Juan C. González,a Verónica Daier,a Silvia García,a Bernard A. Goodman,b Ana M. Atria,c Luis F. Sala*a and Sandra Signorella*a a Departamento de Química, Facultad de Ciencias Bioquímicas y Farmacéuticas, UNR, Suipacha 531, 2000, Rosario, Argentina. E-mail: [email protected]; [email protected] b Scottish Crop Research Institute, Invergowrie, Dundee, Scotland, UK DD2 5DA c Facultad de Ciencias Químicas y Farmacéuticas and CIMAT, Universidad de Chile, Casilla 233, Santiago, Chile The oxidation of D-galacturonic acid by CrVI yields the aldaric acid and CrIII as final products when a 30-times or higher excess of the uronic acid over CrVI is used. The redox reaction involves the formation of intermediate CrIV and CrV species, with CrVI and the two intermediate species reacting with galacturonic acid at comparable rates. The rate of disappearance of CrVI, CrIV and CrV depends on pH and [substrate], and the slow reaction step of the CrVI to CrIII conversion depends on the reaction conditions. The EPR spectra show that five-coordinate oxo–CrV bischelates are formed at pH ≤ 5 with the uronic acid bound to CrV through the carboxylate and the -OH group of the furanose form or the ring oxygen of the pyranose form. Six-coordinated oxo–CrV monochelates are observed as minor species in addition to the major five- V VI coordinated oxo–Cr bischelates only for galacturonic acid : Cr ratio ≤ 10 : 1, in 0.25–0.50 M HClO4. At pH 7.5 the EPR spectra show the formation of a CrV complex where the vic-diol groups of Galur participate in the bonding to CrV. -
Electronic Supplementary Information
Electronic Supplementary Material (ESI) for Chemical Science. This journal is © The Royal Society of Chemistry 2019 Electronic Supplementary Information Poly(ionic liquid)s as a Distinct Receptor Material to Create Highly- Integrated Sensing Platform for Efficiently Identifying a Myriad of Saccharides Wanlin Zhang, Yao Li, Yun Liang, Ning Gao, Chengcheng Liu, Shiqiang Wang, Xianpeng Yin, and Guangtao Li* *Corresponding authors: Guangtao Li ([email protected]) S1 Contents 1. Experimental Section (Page S4-S6) Materials and Characterization (Page S4) Experimental Details (Page S4-S6) 2. Figures and Tables (Page S7-S40) Fig. S1 SEM image of silica colloidal crystal spheres and PIL inverse opal spheres. (Page S7) Fig. S2 Adsorption isotherm of PIL inverse opal. (Page S7) Fig. S3 Dynamic mechanical analysis and thermal gravimetric analysis of PIL materials. (Page S7) Fig. S4 Chemical structures of 23 saccharides. (Page S8) Fig. S5 The counteranion exchange of PIL photonic spheres from Br- to DCA. (Page S9) Fig. S6 Reflection and emission spectra of spheres for saccharides. (Page S9) Table S1 The jack-knifed classification on single-sphere array for 23 saccharides. (Page S10) Fig. S7 Lower detection concentration at 10 mM of the single-sphere array. (Page S11) Fig. S8 Lower detection concentration at 1 mM of the single-sphere array. (Page S12) Fig. S9 PIL sphere exhibiting great pH robustness within the biological pH range. (Page S12) Fig. S10 Exploring the tolerance of PIL spheres to different conditions. (Page S13) Fig. S11 Exploring the reusability of PIL spheres. (Page S14) Fig. S12 Responses of spheres to sugar alcohols. (Page S15) Fig. -
Supporting Online Material
1 SUPPLEMENTARY MATERIAL 2 The glycan alphabet is not universal: a hypothesis 3 4 Jaya Srivastava1*, P. Sunthar2 and Petety V. Balaji1 5 6 1Department of Biosciences and Bioengineering, Indian Institute of 7 Technology Bombay, Powai, Mumbai 400076, India 8 9 2Department of Chemical Engineering, Indian Institute of Technology 10 Bombay, Powai, Mumbai 400076, India 11 12 *Corresponding author 13 Email: [email protected] 1 14 CONTENTS Data Description Figure S1 Number of organisms with different number of strains sequenced Figure S2 Biosynthesis pathways Figure S3 Proteome sizes for different number of monosaccharides Figure S4 Prevalence of monosaccharides in species versus that in genomes Figure S5 Bit score distribution plots for hits of various pairs of profiles Table S1 Tools and databases used in this study References References cited in Table S1 Table S2 Comparison of the precursor and nucleotide used for the biosynthesis of two enantiomers of a monosaccharide Flowchart S1 Procedure used to generate HMM profiles Flowchart S2 Precedence rules for assigning annotation to proteins that are hits to two or more profiles and/or BLASTp queries References References to the research articles which describe the pathways (or enzymes of the pathways) of monosaccharide biosynthesis. These formed the basis for generating HMM profiles and choosing BLASTp queries. 15 16 MS-EXCEL file provided separately: Supplementary Data.xlsx 17 Worksheet1 Details of HMM profiles Worksheet2 Details of BLASTp queries Worksheet3 Prevalence of monosaccharides in genomes / species Worksheet4 Abbreviated names of monosaccharides Worksheet5 Enzyme types, enzymes and monosaccharide groups Worksheet6 Precursors of various monosaccharides 18 2 19 Figure S1 The number of species for which different number of strains are sequenced. -
The Fischer Proof of the Structure of (+)-Glucose Started in 1888, 12
The Fischer proof of the structure of (+)-glucose Started in 1888, 12 years after the proposal that carbon was tetrahedral, and thus had stereoisomers. Tools: - melting points - optical rotation (determine whether a molecule is optically active) - chemical reactions Fischer knew: - (+)-glucose is an aldohexose. - Therefore, there are 4 stereocenters and 24 = 16 stereoisomers (8 D-sugars and 8 L-sugars) - At this time could not determine the actual configuration (D or L) of sugars - Fischer arbitrarily assigned D-glyceraldehyde the following structure. CHO H OH CH2OH - In 1951 Fischer was shown to have guessed correctly. CO2H CHO H OH HO H HO H CH2OH CO2H L-Tartaric acid L-glyceraldehyde Which of the 8 D-aldohexoses is (+)-glucose??? 1) Oxidation of (+)-glucose with nitric acid gives an aldaric acid, glucaric acid, that is optically active. Therefore (+)-glucose cannot have structures 1 or 7, which would give optically inactive aldaric acids. HNO3 (+)-glucose Glucaric acid Optically active CHO CO2H H OH H OH 1 H OH HNO3 H OH Mirror plane H OH H OH H OH H OH Since these aldaric CH2OH CO2H acids have mirror planes they are meso structures. CHO CO2H They are not optically H OH H OH active HO H HNO3 HO H 7 Mirror plane HO H HO H H OH H OH CH2OH CO2H 2) Ruff degradation of (+)-glucose gives (-)-arabinose. Oxidation of (-)-arabinose with nitric acid gives arabanaric acid, which is optically active. Therefore, (-)-arabinose cannot have structures 9 or 11, which would give optically inactive aldaric acids. If arabinose cannot be 9 or 11, (+)-glucose cannot be 2 (1 was already eliminated), 5 or 6, which would give 9 or 11 in a Ruff degradation. -
Hydrocolloids Structure and Properties the Building Blocks for Structure Timothy J
Hydrocolloids Structure and Properties The building blocks for structure Timothy J. Foster 18 month Meeting, Unilever Vlaardingen, March 29‐31, 2010 Manufactured Materials Foams Emulsions Natural Materials This shows a layer of onion (Allium) cells. Targeting Hydrocolloids For Specific Applications: Approach Material Ingredient Properties Microstructure Oral Process Response Packaging Distribution Storage Process Controlled oral response Process (mouth/gut) Controlling Structure (taste, flavour, texture) CONSTRUCTION DECONSTRUCTION Designed texture/ Ingredient In body functionality Ingredient appearance/ (enzymes) behaviour Interaction with body mucins Reconstruction (associative and new phase separation) Microstructure changes as a Impact on / of starting function of enzyme action materials / structures Re-assembly of structures as a function of digestion breakdown products and body secretions (micelle formation, delivery vehicles) Single Biopolymer systems Hydrocolloid Structure/ Function Need: - define biopolymer primary structure - understand the nature of the interaction / rates - understand the solvent effects - measure material properties - test influence of primary structure variation and changes in environmental conditions on mechanical properties. Hydrocolloid Materials & Function Gelling Thickening Emulsification Pectin Pectin • Gelatin Alginate Alginate • Milk proteins Starch Starch • Egg proteins Agar LBG Carrageenan • Soya proteins Guar gum Gellan • Pea proteins Gelatin Xanthan • Gum Arabic Milk proteins Egg proteins Hydrocolloid -
1) Which of the Following Biomolecules Simply Refers to As “Staff of Life”? (A) Lipids (B) Proteins (C) Vitamins (D) Carbohydrates Sol: (D) Carbohydrates
1) Which of the following Biomolecules simply refers to as “Staff of life”? (a) Lipids (b) Proteins (c) Vitamins (d) Carbohydrates Sol: (d) Carbohydrates. 2) Which of the following is the simplest form of carbohydrates? (a) Carboxyl groups (b) Aldehyde and Ketone groups (c) Alcohol and Carboxyl groups (d) Hydroxyl groups and Hydrogen groups Sol: (b) Aldehyde and Ketone groups. 3) Which of the following monosaccharides is the majority found in the human body? (a) D-type (b) L-type (c) LD-types (d) None of the above Sol: (a) D-type. 4) Which of the following is the most abundant biomolecule on the earth? (a) Lipids (b) Proteins (c) Carbohydrates (d) Nucleic acids. Sol: (c) Carbohydrates. 5) Which of the following are the major functions of Carbohydrates? (a) Storage (b) Structural framework (c) Transport Materials (d) Both Storage and structural framework Sol: (d) Both Storage and structural framework. 6) Which of the following is the general formula of Carbohydrates? (a) (C4H2O)n (b) (C6H2O)n (c) (CH2O)n (d) (C2H2O)n COOH Sol: (c) (CH2O)n. 7) Which of the following is the smallest carbohydrate – triose? (a) Ribose (b) Glucose (c) Glyceraldehyde (d) Dihydroxyacetone Sol: (c) Glyceraldehyde. 8) Which of the following is a reducing sugar? (a) Dihydroxyacetone (b) Erythrulose (c) Glucose (d) All of the above Sol: (c) Glucose. 9) Which of the following is an example of Epimers? (a) Glucose and Ribose (b) Glucose and Galactose (c) Galactose, Mannose and Glucose (d) Glucose, Ribose and Mannose Sol: (b) Glucose and Galactose 10) Which of the following has reducing properties? (a) Mucic acid (b) Glucaric acid (c) Gluconic acid (d) Glucuronic acid Sol: (d) Glucuronic acid. -
Converting Galactose Into the Rare Sugar Talose with Cellobiose 2-Epimerase As Biocatalyst
molecules Article Converting Galactose into the Rare Sugar Talose with Cellobiose 2-Epimerase as Biocatalyst Stevie Van Overtveldt, Ophelia Gevaert, Martijn Cherlet, Koen Beerens and Tom Desmet * Centre for Synthetic Biology, Faculty of Bioscience Engineering, Ghent University, Coupure Links 653, 9000 Gent, Belgium; [email protected] (S.V.O.); [email protected] (O.G.); [email protected] (M.C.); [email protected] (K.B.) * Correspondence: [email protected]; Tel.: +32-9264-9920 Academic Editors: Giorgia Oliviero and Nicola Borbone Received: 17 September 2018; Accepted: 29 September 2018; Published: 1 October 2018 Abstract: Cellobiose 2-epimerase from Rhodothermus marinus (RmCE) reversibly converts a glucose residue to a mannose residue at the reducing end of β-1,4-linked oligosaccharides. In this study, the monosaccharide specificity of RmCE has been mapped and the synthesis of D-talose from D-galactose was discovered, a reaction not yet known to occur in nature. Moreover, the conversion is industrially relevant, as talose and its derivatives have been reported to possess important antimicrobial and anti-inflammatory properties. As the enzyme also catalyzes the keto-aldo isomerization of galactose to tagatose as a minor side reaction, the purity of talose was found to decrease over time. After process optimization, 23 g/L of talose could be obtained with a product purity of 86% and a yield of 8.5% (starting from 4 g (24 mmol) of galactose). However, higher purities and concentrations can be reached by decreasing and increasing the reaction time, respectively. In addition, two engineering attempts have also been performed. -
WO 2013/070444 Al 16 May 2013 (16.05.2013) W P O P C T
(12) INTERNATIONAL APPLICATION PUBLISHED UNDER THE PATENT COOPERATION TREATY (PCT) (19) World Intellectual Property Organization International Bureau (10) International Publication Number (43) International Publication Date WO 2013/070444 Al 16 May 2013 (16.05.2013) W P O P C T (51) International Patent Classification: (81) Designated States (unless otherwise indicated, for every A23G 4/00 (2006.01) kind of national protection available): AE, AG, AL, AM, AO, AT, AU, AZ, BA, BB, BG, BH, BN, BR, BW, BY, (21) International Application Number: BZ, CA, CH, CL, CN, CO, CR, CU, CZ, DE, DK, DM, PCT/US20 12/062043 DO, DZ, EC, EE, EG, ES, FI, GB, GD, GE, GH, GM, GT, (22) International Filing Date: HN, HR, HU, ID, IL, IN, IS, JP, KE, KG, KM, KN, KP, 26 October 2012 (26.10.2012) KR, KZ, LA, LC, LK, LR, LS, LT, LU, LY, MA, MD, ME, MG, MK, MN, MW, MX, MY, MZ, NA, NG, NI, (25) Filing Language: English NO, NZ, OM, PA, PE, PG, PH, PL, PT, QA, RO, RS, RU, (26) Publication Language: English RW, SC, SD, SE, SG, SK, SL, SM, ST, SV, SY, TH, TJ, TM, TN, TR, TT, TZ, UA, UG, US, UZ, VC, VN, ZA, (30) Priority Data: ZM, ZW. 61/556,546 7 November 20 11 (07. 11.201 1) US (84) Designated States (unless otherwise indicated, for every (71) Applicant (for all designated States except US): WVI. kind of regional protection available): ARIPO (BW, GH, WRIGLEY JR. COMPANY [US/US]; 1132 Blackhawk GM, KE, LR, LS, MW, MZ, NA, RW, SD, SL, SZ, TZ, Street, Chicago, IL 60642 (US). -
Monosaccharides: a Tof-SIMS Reference Accession #: 01592, 01593, 01594, 01595, 01596, 01597, 01598, Spectra Database
Monosaccharides: A ToF-SIMS reference Accession #: 01592, 01593, 01594, 01595, 01596, 01597, 01598, spectra database. II. Positive polarity 01599, 01600, 01601, 01602, a) 01603, 01604, 01605, 01606, Laetitia Bernard, Rowena Crockett, and Maciej Kawecki 01607, 01608, 01609, 01610 Laboratory of Nanoscale Materials Science, Empa, CH-8600 Dübendorf, Switzerland Technique: SIMS (Received 20 August 2019; accepted 30 October 2019; published 3 December 2019) Host Material: Silicon (100) wafer The number of time-of-flight secondary ion mass spectrometry studies on biological tissues and Instrument: IONTOF TOF-SIMS.5 cells has strongly increased since the development of primary ion sources that allow not only ele- Major Species in Spectra: C, H, O, (N) mental but also molecular analysis. Substantial fragmentation during ionic bombardment results in a Minor Species in Spectra: Na, K large number of peaks, rendering data analysis complex. Complete and trustable sets of reference spectra for the main biological building blocks, i.e., amino acids, monosaccharides, fatty acids, and Published Spectra: 19 nucleotides, are required. This work aims to provide an accurate and extensive library of reference Spectra in Electronic Record: 19 + spectra for monosaccharides, measured with the Bi3 primary ion. Here (Paper II), the positive polar- Published Figures: 20 ity spectra and lists of associated characteristic fragments are presented. Published by the AVS. Spectral Category: Reference https://doi.org/10.1116/1.5125103 Keywords: ToF-SIMS, carbohydrate, sugar, monosaccharide, mass spectrometry, fragmentation INTRODUCTION Fluka and all others from Sigma Aldrich. Each powder was dissolved in freshly de-ionized H2O (resistivity >18.2 MΩ cm) Monosaccharides are the building blocks of structural polymers at a concentration of 0.1M. -
4202-B: Nucleic Acids and Carbohydrates L-4 1 Deoxy Sugars
4202-B: Nucleic acids and Carbohydrates L-4 Deoxy sugars In these sugars one of the OH groups is replaced by a hydrogen. 2-Deoxyribose (oxygen missing at C-2 position) is an important example of a deoxy sugar. It is important component of DNA, and lack of C-2 hydroxyl provide additional stability to it as compared to RNA as no intramolecular nuclephilic attack on phosphate chain can occur. Amino sugars In amino sugars one of the OH groups is replaced by an amino group. These molecules allow proteins and sugars to combine and produce structures of remarkable variety and beauty. The most common amino sugars are N-acetyl glucosamine and N-acetyl galactosamine, which differ only in stereochemistry. The hard outer skeletons of insects and crustaceans contain chitin, a polymer very like cellulose but made of N-acetyl glucosamine instead of glucose itself. It coils up in a similar way and provides the toughness of crab shells and beetle cases. Some important antibiotics contain amino sugars. For example, the three subunits of the antibiotic gentamicin are deoxyamino sugars (the middle subunit is missing the ring oxygen). N-Acetyl glucosamine N-Acetyl galactosamine Gentamicin, an antibiotic Cell membranes must not be so impermeable as they need to allow the passage of water and complex molecules. These membranes contain glycoproteins—proteins with amino sugar residues attached to asparagine, serine, or threonine in the protein. The attachment is at the anomeric position so that these compounds are O- or N-glycosides of the amino sugars. The structure below shows N-acetyl galactosamine attached to an asparagine residue as an N-glycoside. -
Food Carbohydrates: Monosaccharides and Oligosaccharides
Paper No. 01 Paper Title: Food Chemistry Module-04: Food carbohydrates: Monosaccharides and Oligosaccharides Monosaccharides The simplest form of carbohydrates is the monosaccharide. Monosaccharides are either aldoses or ketoses. Aldoses such as glucose consists of a carbon backbone and a carbonyl group (C=O) located at the end of the chain. Ketoses such as fructose consists of a carbon backbone with a carbonyl group located at any other carbon in the chain. The remaining carbon atoms are bound to hydroxyl groups (-OH). Monosaccharide classifications based on the number of carbons Number Category of Examples Name Carbons 4 Tetrose Erythrose, Threose 5 Pentose Arabinose, Ribose, Ribulose, Xylose, Xylulose, Lyxose Allose, Altrose, Fructose, Galactose, Glucose, Gulose, Idose, 6 Hexose Mannose, Sorbose, Talose, Tagatose 7 Heptose Sedoheptulose, Mannoheptulose Monosaccharides Three common sugars glucose, galactose and fructose share the same molecular formula: C6H12O6. Because of their six carbon atoms, each is a hexose. Although all three share the same molecular formula, the arrangement of atoms differs in each case. Substances such as these three, which have identical molecular formulas but different structural formulas, are known as structural isomers. Glucose "Blood sugar" is the immediate source of energy for cellular respiration. Glucose, which is also referred to as dextrose, is a moderately sweet sugar found in vegetables and fruit. When glucose is fermented by the enzyme zymase, in yeast, it results in the formation of carbon dioxide and ethyl alcohol. It is the basic structure to which all carbohydrates are reduced to in the end, for transport via the bloodstream and use by the cells of the body. -
Mannaric Acid and Mannaric Acid Polyamides: Synthesis and Characterization
University of Montana ScholarWorks at University of Montana Graduate Student Theses, Dissertations, & Professional Papers Graduate School 2008 Mannaric Acid and Mannaric Acid Polyamides: Synthesis and Characterization Chrissie Ann Carpenter The University of Montana Follow this and additional works at: https://scholarworks.umt.edu/etd Let us know how access to this document benefits ou.y Recommended Citation Carpenter, Chrissie Ann, "Mannaric Acid and Mannaric Acid Polyamides: Synthesis and Characterization" (2008). Graduate Student Theses, Dissertations, & Professional Papers. 642. https://scholarworks.umt.edu/etd/642 This Dissertation is brought to you for free and open access by the Graduate School at ScholarWorks at University of Montana. It has been accepted for inclusion in Graduate Student Theses, Dissertations, & Professional Papers by an authorized administrator of ScholarWorks at University of Montana. For more information, please contact [email protected]. MANNARIC ACID AND MANNARIC ACID POLYAMIDES: SYNTHESIS AND CHARACTERIZATION By CHRISSIE ANN CARPENTER B.A. Chemistry, Carroll College, Helena, Montana, USA, 2002 Dissertation Presented in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Chemistry The University of Montana Missoula, MT 29 September 2008 Approved by: Dr. David A. Strobel, Dean Graduate School Dr. Donald E. Kiely, Chairperson Chemistry Dr. Merilyn Manley-Harris Chemistry Dr. Christopher P. Palmer Chemistry Dr. Holly Thompson Chemistry Dr. Andrew Ware Physics Carpenter, Chrissie A., Ph.D., Fall 2008 Chemistry Mannaric Acid and Mannaric Acid Polyamides: Synthesis and Characterization Chairperson: Donald E. Kiely D-Mannose, an aldohexose and a C-2 epimer of the common monosaccharide D- glucose, occurs in a pyranose ring form as a component of a variety of plant polysaccharides and is the third most abundant naturally occurring aldohexose after D- glucose and D-galactose, respectively.