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The Role of Biocatalysis in the Asymmetric Synthesis of Alkaloids – an Update Cite This: RSC Adv.,2021,11, 28223 Emmanuel Cigan, † Bettina Eggbauer, † Joerg H
RSC Advances REVIEW View Article Online View Journal | View Issue The role of biocatalysis in the asymmetric synthesis of alkaloids – an update Cite this: RSC Adv.,2021,11, 28223 Emmanuel Cigan, † Bettina Eggbauer, † Joerg H. Schrittwieser * and Wolfgang Kroutil Alkaloids are a group of natural products with interesting pharmacological properties and a long history of medicinal application. Their complex molecular structures have fascinated chemists for decades, and their total synthesis still poses a considerable challenge. In a previous review, we have illustrated how biocatalysis can make valuable contributions to the asymmetric synthesis of alkaloids. The chemo-enzymatic strategies discussed therein have been further explored and improved in recent years, and advances in amine Received 29th May 2021 biocatalysis have vastly expanded the opportunities for incorporating enzymes into synthetic routes Accepted 30th July 2021 towards these important natural products. The present review summarises modern developments in DOI: 10.1039/d1ra04181a chemo-enzymatic alkaloid synthesis since 2013, in which the biocatalytic transformations continue to rsc.li/rsc-advances take an increasingly ‘central’ role. Creative Commons Attribution 3.0 Unported Licence. 1 Introduction originally derived – but also amides, nitro, and nitroso compounds, while excluding primary metabolites such as The alkaloids are a large and structurally diverse group of amino acids, proteins, and porphyrins.1a,d Between 25 000 and nitrogen-containing secondary metabolites that -
Structures of Monosaccharides Hemiacetals
Structures of Monosaccharides Hemiacetals • Although, the open chain structures of monosaccharides are consistent with the chemistry of carbohydrates, in reality they are oversimplifications of the true structure of carbohydrates. • It is common knowledge that aldehydes react with alcohols to form hemiacetals. In cases where a molecule is a hydroxyaldehyde such as 4- hydroxybutanal or 5-hydroxypentanal, cyclic hemiacetals result. 9:47 AM 1 Structures of Monosaccharides Hemiacetals • Aldoses often contain an aldehyde group and several hydroxyl groups as part of the same molecule; they have a greater tendency of forming cyclic hemiacetals. In fact, in aqueous solution carbohydrates exist almost exclusively in the ring-closed form At equilibrium, the linear aldehyde or ketone structure represents less than 1% of the sugar present. • Five and six-membered rings are thermodynamically more stable than their corresponding four and seven membered rings, since they are less strained. • Five- (furanoses) and six-membered cyclic hemiacetals (pyranoses) are often more stable than their open-chain forms. In particular the six-membered rings which can adopt a chair conformation are 9:47 AM 2 essentially free from all types of strains. Structures of Monosaccharides Evidence for Existence of Monosacharides as Hemiacetals What physical, chemical and spectroscopic evidence support the existence of monosaccharide sugars as cyclic hemi-acetals. (a) Two anomers of glucose capable of existing independently with different physical (melting points and specific optical rotation) and chemical properties can be obtained by recrystallization. (b) the 1H-NMR and IR-spectra of solutions of pure sugars show the presence of mixtures (anomeric hemiacetals) and absence of an aldehydic peak is a sufficient indicator that the sugars exist in some other form other than the open-chain form. -
Pentose PO4 Pathway, Fructose, Galactose Metabolism.Pptx
Pentose PO4 pathway, Fructose, galactose metabolism The Entner Doudoroff pathway begins with hexokinase producing Glucose 6 PO4 , but produce only one ATP. This pathway prevalent in anaerobes such as Pseudomonas, they doe not have a Phosphofructokinase. The pentose phosphate pathway (also called the phosphogluconate pathway and the hexose monophosphate shunt) is a biochemical pathway parallel to glycolysis that generates NADPH and pentoses. While it does involve oxidation of glucose, its primary role is anabolic rather than catabolic. There are two distinct phases in the pathway. The first is the oxidative phase, in which NADPH is generated, and the second is the non-oxidative synthesis of 5-carbon sugars. For most organisms, the pentose phosphate pathway takes place in the cytosol. For each mole of glucose 6 PO4 metabolized to ribulose 5 PO4, 2 moles of NADPH are produced. 6-Phosphogluconate dh is not only an oxidation step but it’s also a decarboxylation reaction. The primary results of the pathway are: The generation of reducing equivalents, in the form of NADPH, used in reductive biosynthesis reactions within cells (e.g. fatty acid synthesis). Production of ribose-5-phosphate (R5P), used in the synthesis of nucleotides and nucleic acids. Production of erythrose-4-phosphate (E4P), used in the synthesis of aromatic amino acids. Transketolase and transaldolase reactions are similar in that they transfer between carbon chains, transketolases 2 carbon units or transaldolases 3 carbon units. Regulation; Glucose-6-phosphate dehydrogenase is the rate- controlling enzyme of this pathway. It is allosterically stimulated by NADP+. The ratio of NADPH:NADP+ is normally about 100:1 in liver cytosol. -
MM# Modeling of Aldopentose Pyranose Rings Michael K
Chemical and Biological Engineering Publications Chemical and Biological Engineering 2002 MM# Modeling of Aldopentose Pyranose Rings Michael K. Dowd United States Department of Agriculture William M. Rockey Iowa State University Alfred D. French United States Department of Agriculture See next page for additional authors Follow this and additional works at: http://lib.dr.iastate.edu/cbe_pubs Part of the Biochemical and Biomolecular Engineering Commons, and the Biological Engineering Commons The ompc lete bibliographic information for this item can be found at http://lib.dr.iastate.edu/ cbe_pubs/31. For information on how to cite this item, please visit http://lib.dr.iastate.edu/ howtocite.html. This Article is brought to you for free and open access by the Chemical and Biological Engineering at Iowa State University Digital Repository. It has been accepted for inclusion in Chemical and Biological Engineering Publications by an authorized administrator of Iowa State University Digital Repository. For more information, please contact [email protected]. MM# Modeling of Aldopentose Pyranose Rings Abstract MM3 (version 1992, ϵ=3.0) was used to study the ring conformations of d-xylopyranose, d-lyxopyranose and d-arabinopyranose. The nee rgy surfaces exhibit low-energy regions corresponding to chair and skew forms with high-energy barriers between these regions corresponding to envelope and half-chair forms. The lowest 4 energy conformer is C 1 for α- and β-xylopyranose and α- and β-lyxopyranose, and the lowest energy 1 conformer is C 4 for α- and β-arabinopyranose. Only α-lyxopyranose exhibits a secondary low-energy region 1 ( C 4) within 1 kcal/mol of its global minimum. -
Carbohydrates: Structure and Function
CARBOHYDRATES: STRUCTURE AND FUNCTION Color index: . Very important . Extra Information. “ STOP SAYING I WISH, START SAYING I WILL” 435 Biochemistry Team *هذا العمل ﻻ يغني عن المصدر المذاكرة الرئيسي • The structure of carbohydrates of physiological significance. • The main role of carbohydrates in providing and storing of energy. • The structure and function of glycosaminoglycans. OBJECTIVES: 435 Biochemistry Team extra information that might help you 1-synovial fluid: - It is a viscous, non-Newtonian fluid found in the cavities of synovial joints. - the principal role of synovial fluid is to reduce friction between the articular cartilage of synovial joints during movement O 2- aldehyde = terminal carbonyl group (RCHO) R H 3- ketone = carbonyl group within (inside) the compound (RCOR’) 435 Biochemistry Team the most abundant organic molecules in nature (CH2O)n Carbohydrates Formula *hydrate of carbon* Function 1-provides important part of energy Diseases caused by disorders of in diet . 2-Acts as the storage form of energy carbohydrate metabolism in the body 3-structural component of cell membrane. 1-Diabetesmellitus. 2-Galactosemia. 3-Glycogen storage disease. 4-Lactoseintolerance. 435 Biochemistry Team Classification of carbohydrates monosaccharides disaccharides oligosaccharides polysaccharides simple sugar Two monosaccharides 3-10 sugar units units more than 10 sugar units Joining of 2 monosaccharides No. of carbon atoms Type of carbonyl by O-glycosidic bond: they contain group they contain - Maltose (α-1, 4)= glucose + glucose -Sucrose (α-1,2)= glucose + fructose - Lactose (β-1,4)= glucose+ galactose Homopolysaccharides Heteropolysaccharides Ketone or aldehyde Homo= same type of sugars Hetero= different types Ketose aldose of sugars branched unBranched -Example: - Contains: - Contains: Examples: aldehyde group glycosaminoglycans ketone group. -
Structural Features
1 Structural features As defined by the International Union of Pure and Applied Chemistry gly- cans are structures of multiple monosaccharides linked through glycosidic bonds. The terms sugar and saccharide are synonyms, depending on your preference for Arabic (“sukkar”) or Greek (“sakkēaron”). Saccharide is the root for monosaccha- rides (a single carbohydrate unit), oligosaccharides (3 to 20 units) and polysac- charides (large polymers of more than 20 units). Carbohydrates follow the basic formula (CH2O)N>2. Glycolaldehyde (CH2O)2 would be the simplest member of the family if molecules of two C-atoms were not excluded from the biochemical repertoire. Glycolaldehyde has been found in space in cosmic dust surrounding star-forming regions of the Milky Way galaxy. Glycolaldehyde is a precursor of several organic molecules. For example, reaction of glycolaldehyde with propenal, another interstellar molecule, yields ribose, a carbohydrate that is also the backbone of nucleic acids. Figure 1 – The Rho Ophiuchi star-forming region is shown in infrared light as captured by NASA’s Wide-field Infrared Explorer. Glycolaldehyde was identified in the gas surrounding the star-forming region IRAS 16293-2422, which is is the red object in the centre of the marked square. This star-forming region is 26’000 light-years away from Earth. Glycolaldehyde can react with propenal to form ribose. Image source: www.eso.org/public/images/eso1234a/ Beginning the count at three carbon atoms, glyceraldehyde and dihydroxy- acetone share the common chemical formula (CH2O)3 and represent the smallest carbohydrates. As their names imply, glyceraldehyde has an aldehyde group (at C1) and dihydoxyacetone a carbonyl group (at C2). -
• for an Anomer, the OH Is Drawn Down. • for a Anomer, the OH Is
How to draw a Haworth projection from an acyclic aldohexose Example: Convert D-mannose into a Haworth projection. CHO HO H HO H H OH H OH CH2OH D-mannose Step [1]: · Draw a hexagon and place the oxygen atom in the upper right corner. O O in upper right corner Step [2]: · Place the anomeric carbon on the first carbon clockwise from the oxygen. · For an anomer, the OH is drawn down. · For a anomer, the OH is drawn up. This C becomes the anomeric C. 1CHO O H O OH HO H 1 1 HO H OH H H OH anomer anomer H OH anomeric carbon - CH2OH first C clockwise from O · Always keep in mind that the anomeric carbon comes from the carbonyl carbon in the acyclic form. Step [3]: · Add the substituents of the three chiral carbons closest to the C=O. · The substituents on the right side of the Fischer projection are drawn down. · The substituents on the left are drawn up. CHO HO 2 H add H O H O H 3 C2 - C4 H HO H 4 OH OH 4 OH OH H 4 OH HO OH HO OH 3 2 3 2 H H H OH H H anomer anomer CH2OH Haworth convention - 2 Step [4]: · For D sugars the CH2OH group is drawn up. For L sugars the CH2OH group is drawn down. CHO CH2OH CH2OH HO H H O H H O H H HO H H OH OH OH OH H OH HO OH HO OH H H H OH H H anomer anomer CH2OH This OH on the right side CH OH is drawn up. -
Hydrocolloids Structure and Properties the Building Blocks for Structure Timothy J
Hydrocolloids Structure and Properties The building blocks for structure Timothy J. Foster 18 month Meeting, Unilever Vlaardingen, March 29‐31, 2010 Manufactured Materials Foams Emulsions Natural Materials This shows a layer of onion (Allium) cells. Targeting Hydrocolloids For Specific Applications: Approach Material Ingredient Properties Microstructure Oral Process Response Packaging Distribution Storage Process Controlled oral response Process (mouth/gut) Controlling Structure (taste, flavour, texture) CONSTRUCTION DECONSTRUCTION Designed texture/ Ingredient In body functionality Ingredient appearance/ (enzymes) behaviour Interaction with body mucins Reconstruction (associative and new phase separation) Microstructure changes as a Impact on / of starting function of enzyme action materials / structures Re-assembly of structures as a function of digestion breakdown products and body secretions (micelle formation, delivery vehicles) Single Biopolymer systems Hydrocolloid Structure/ Function Need: - define biopolymer primary structure - understand the nature of the interaction / rates - understand the solvent effects - measure material properties - test influence of primary structure variation and changes in environmental conditions on mechanical properties. Hydrocolloid Materials & Function Gelling Thickening Emulsification Pectin Pectin • Gelatin Alginate Alginate • Milk proteins Starch Starch • Egg proteins Agar LBG Carrageenan • Soya proteins Guar gum Gellan • Pea proteins Gelatin Xanthan • Gum Arabic Milk proteins Egg proteins Hydrocolloid -
Aldehydes Can React with Alcohols to Form Hemiacetals
340 14 . Nucleophilic substitution at C=O with loss of carbonyl oxygen You have, in fact, already met some reactions in which the carbonyl oxygen atom can be lost, but you probably didn’t notice at the time. The equilibrium between an aldehyde or ketone and its hydrate (p. 000) is one such reaction. O HO OH H2O + R1 R2 R1 R2 When the hydrate reverts to starting materials, either of its two oxygen atoms must leave: one OPh came from the water and one from the carbonyl group, so 50% of the time the oxygen atom that belonged to the carbonyl group will be lost. Usually, this is of no consequence, but it can be useful. O For example, in 1968 some chemists studying the reactions that take place inside mass spectrometers needed to label the carbonyl oxygen atom of this ketone with the isotope 18 O. 16 18 By stirring the ‘normal’ O compound with a large excess of isotopically labelled water, H 2 O, for a few hours in the presence of a drop of acid they were able to make the required labelled com- í In Chapter 13 we saw this way of pound. Without the acid catalyst, the exchange is very slow. Acid catalysis speeds the reaction up by making a reaction go faster by raising making the carbonyl group more electrophilic so that equilibrium is reached more quickly. The the energy of the starting material. We 18 also saw that the position of an equilibrium is controlled by mass action— O is in large excess. -
1) Which of the Following Biomolecules Simply Refers to As “Staff of Life”? (A) Lipids (B) Proteins (C) Vitamins (D) Carbohydrates Sol: (D) Carbohydrates
1) Which of the following Biomolecules simply refers to as “Staff of life”? (a) Lipids (b) Proteins (c) Vitamins (d) Carbohydrates Sol: (d) Carbohydrates. 2) Which of the following is the simplest form of carbohydrates? (a) Carboxyl groups (b) Aldehyde and Ketone groups (c) Alcohol and Carboxyl groups (d) Hydroxyl groups and Hydrogen groups Sol: (b) Aldehyde and Ketone groups. 3) Which of the following monosaccharides is the majority found in the human body? (a) D-type (b) L-type (c) LD-types (d) None of the above Sol: (a) D-type. 4) Which of the following is the most abundant biomolecule on the earth? (a) Lipids (b) Proteins (c) Carbohydrates (d) Nucleic acids. Sol: (c) Carbohydrates. 5) Which of the following are the major functions of Carbohydrates? (a) Storage (b) Structural framework (c) Transport Materials (d) Both Storage and structural framework Sol: (d) Both Storage and structural framework. 6) Which of the following is the general formula of Carbohydrates? (a) (C4H2O)n (b) (C6H2O)n (c) (CH2O)n (d) (C2H2O)n COOH Sol: (c) (CH2O)n. 7) Which of the following is the smallest carbohydrate – triose? (a) Ribose (b) Glucose (c) Glyceraldehyde (d) Dihydroxyacetone Sol: (c) Glyceraldehyde. 8) Which of the following is a reducing sugar? (a) Dihydroxyacetone (b) Erythrulose (c) Glucose (d) All of the above Sol: (c) Glucose. 9) Which of the following is an example of Epimers? (a) Glucose and Ribose (b) Glucose and Galactose (c) Galactose, Mannose and Glucose (d) Glucose, Ribose and Mannose Sol: (b) Glucose and Galactose 10) Which of the following has reducing properties? (a) Mucic acid (b) Glucaric acid (c) Gluconic acid (d) Glucuronic acid Sol: (d) Glucuronic acid. -
WO 2013/070444 Al 16 May 2013 (16.05.2013) W P O P C T
(12) INTERNATIONAL APPLICATION PUBLISHED UNDER THE PATENT COOPERATION TREATY (PCT) (19) World Intellectual Property Organization International Bureau (10) International Publication Number (43) International Publication Date WO 2013/070444 Al 16 May 2013 (16.05.2013) W P O P C T (51) International Patent Classification: (81) Designated States (unless otherwise indicated, for every A23G 4/00 (2006.01) kind of national protection available): AE, AG, AL, AM, AO, AT, AU, AZ, BA, BB, BG, BH, BN, BR, BW, BY, (21) International Application Number: BZ, CA, CH, CL, CN, CO, CR, CU, CZ, DE, DK, DM, PCT/US20 12/062043 DO, DZ, EC, EE, EG, ES, FI, GB, GD, GE, GH, GM, GT, (22) International Filing Date: HN, HR, HU, ID, IL, IN, IS, JP, KE, KG, KM, KN, KP, 26 October 2012 (26.10.2012) KR, KZ, LA, LC, LK, LR, LS, LT, LU, LY, MA, MD, ME, MG, MK, MN, MW, MX, MY, MZ, NA, NG, NI, (25) Filing Language: English NO, NZ, OM, PA, PE, PG, PH, PL, PT, QA, RO, RS, RU, (26) Publication Language: English RW, SC, SD, SE, SG, SK, SL, SM, ST, SV, SY, TH, TJ, TM, TN, TR, TT, TZ, UA, UG, US, UZ, VC, VN, ZA, (30) Priority Data: ZM, ZW. 61/556,546 7 November 20 11 (07. 11.201 1) US (84) Designated States (unless otherwise indicated, for every (71) Applicant (for all designated States except US): WVI. kind of regional protection available): ARIPO (BW, GH, WRIGLEY JR. COMPANY [US/US]; 1132 Blackhawk GM, KE, LR, LS, MW, MZ, NA, RW, SD, SL, SZ, TZ, Street, Chicago, IL 60642 (US). -