Contents • January/February 2014 • Volume 2, No. 1

CONTENTS • JANUARY/FEBRUARY 2014 • VOLUME 2, NO. 1

EUKARYOTES Draft Genome Sequence of the Formaldehyde-Resistant Fungus Byssochlamys spectabilis e01162-13 No. 5 (Anamorph Paecilomyces variotii No. 5) (NBRC109023) Takuji Oka, Keisuke Ekino, Kohsai Fukuda, Yoshiyuki Nomura

Draft Genome Sequence of the D-Xylose-Fermenting Yeast Spathaspora arborariae e01163-13 UFMG-HM19.1AT Francisco P. Lobo, Davi L. Gonçalves, Sergio L. Alves, Jr, Alexandra L. Gerber, Ana Tereza R. de Vasconcelos, Luiz C. Basso, Glória R. Franco, Marco A. Soares, Raquel M. Cadete, Carlos A. Rosa, Boris U. Stambuk Draft Genome Sequence of Saccharomyces cerevisiae IR-2, a Useful Industrial Strain for e01160-13 Highly Efﬁcient Production of Bioethanol Takehiko Sahara, Kazuhiro E. Fujimori, Maiko Nezuo, Masatoshi Tsukahara, Yuki Tochigi, Satoru Ohgiya, Yoichi Kamagata Draft Genome Sequence of Sclerotinia borealis, a Psychrophilic Plant Pathogenic Fungus e01175-13 Andrey V. Mardanov, Alexey V. Beletsky, Vitaly V. Kadnikov, Alexander N. Ignatov, Nikolai V. Ravin Draft Genome Sequence of Saccharomyces cerevisiae NAM34-4C, a Lactic Acid- e01145-13 Assimilating Industrial Yeast Strain Takehiko Sahara, Kazuhiro E. Fujimori, Maiko Nezuo, Masatoshi Tsukahara, Yuki Tochigi, Satoru Ohgiya, Yue-Qin Tang, Kenji Kida, Hisataka Taguchi, Takashi Akamatsu, Yoichi Kamagata Draft Genome Sequence of Mortierella alpina Isolate CDC-B6842 e01180-13 Kizee A. Etienne, Marcus C. Chibucos, Qi Su, Joshua Orvis, Sean Daugherty, Sandra Ott, Naomi A. Sengamalay, Claire M. Fraser, Shawn R. Lockhart, Vincent M. Bruno Trypanosoma cruzi Clone Dm28c Draft Genome Sequence e01114-13 Edmundo Carlos Grisard, Santuza Maria Ribeiro Teixeira, Luiz Gonzaga Paula de Almeida, Patricia Hermes Stoco, Alexandra Lehmkuhl Gerber, Carlos Talavera-López, Oberdan Cunha Lima, Björn Andersson, Ana Tereza R. de Vasconcelos Whole-Genome Shotgun Assembly and Analysis of the Genome of Shiraia sp. Strain Slf14, e00011-14 a Novel Endophytic Fungus Producing Huperzine A and Hypocrellin A Huilin Yang, Ya Wang, Zhibin Zhang, Riming Yan, Du Zhu Genome Sequence of the Oleaginous Yeast Rhodotorula glutinis ATCC 204091 e00046-14 Debarati Paul, Zenaida Magbanua, Mark Arick II, Todd French, Susan M. Bridges, Shane C. Burgess, Mark L. Lawrence Genome Sequence of the Basidiomycetous Fungus Pseudozyma aphidis DSM70725, an e00053-14 Efﬁcient Producer of Biosurfactant Mannosylerythritol Lipids Stefan Lorenz, Michael Guenther, Christian Grumaz, Steffen Rupp, Susanne Zibek, Kai Sohn CONTENTS • JANUARY/FEBRUARY 2014 • VOLUME 2, NO. 1

Draft Genome Sequence of Lichen-Forming Fungus Cladonia metacorallifera Strain e01065-13 KoLRI002260 Sook-Young Park, Jaeyoung Choi, Gir-Won Lee, Jung A Kim, Soon-Ok Oh, Min-Hye Jeong, Nan-Hee Yu, Soonok Kim, Yong-Hwan Lee, Jae-Seoun Hur Genome Sequence of the Mucoromycotina Fungus Umbelopsis isabellina, an Effective e00071-14 Producer of Lipids Itaru Takeda, Koichi Tamano, Noriko Yamane, Tomoko Ishii, Ai Miura, Myco Umemura, Goro Terai, Scott E. Baker, Hideaki Koike, Masayuki Machida

PROKARYOTES Draft Genome Sequence of Bacillus cereus LCT-BC25, Isolated from Space Flight e00667-13 Xuelin Zhang, Tong Wang, Longxiang Su, Lisha Zhou, Tianzhi Li, Junfeng Wang, Yan Liu, Xuege Jiang, Chunyan Wu, Changting Liu Genome Sequence of the Boron-Tolerant and -Requiring Bacterium Bacillus boroniphilus e00935-13 Bekir Çöl, Zeynep Özkeserli, Dibyendu Kumar, Hilal Özdag˘, Yes¸im D. Alakoç Draft Genome Sequence of the Alga-Aggregating Bacterium Bacillus sp. Strain RP1137 e00973-13 Ryan J. Powell, Tsvetan R. Bachvaroff, Russell T. Hill Draft Genome Sequence of Porphyromonas gingivalis Strain SJD2, Isolated from the e01091-13 Periodontal Pocket of a Patient with Periodontitis in China Dali Liu, Yanbin Zhou, Mariko Naito, Hiromichi Yumoto, Qiang Li, Yoichiro Miyake, Jingping Liang, Rong Shu Genome Sequence of Bacillus cereus Strain LCT-BC235, Carried by the Shenzhou VIII e00665-13 Spacecraft Longxiang Su, Tong Wang, Lisha Zhou, Chunyan Wu, Yinghua Guo, De Chang, Yan Liu, Xuege Jiang, Sanjun Yin, Changting Liu Genome Sequence of Klebsiella pneumoniae Strain LCT-KP182, Which Acquired e01088-13 Hemolytic Properties after Space Flight Xiaojun Zhang, Tong Wang, Wenbin Liu, Yinghua Guo, Junfeng Wang, Tianzhi Li, Xiangqun Fang, Xuelin Zhang, Wenkui Dai, Changting Liu Finished Genome of Zymomonas mobilis subsp. mobilis Strain CP4, an Applied Ethanol e00845-13 Producer Vassili N. Kouvelis, Hazuki Teshima, David Bruce, Chris Detter, Roxanne Tapia, Cliff Han, Vassileia-Olga Tampakopoulou, Lynne Goodwin, Tanja Woyke, Nikos C. Kyrpides, Milton A. Typas, Katherine M. Pappas

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Draft Genome Sequence of Clostridium mangenotii TR, Isolated from the Fecal Material e01107-13 of a Timber Rattlesnake Richard W. McLaughlin, Philip A. Cochran, Scot E. Dowd, Kylie Andersen, Nichole Anderson, Rachel Brennan, Nicole Brook, Tracie Callaway, Kimberly Diamante, Annie Duberstine, Karla Fitch, Heidi Freiheit, Chantel Godlewski, Kelly Gorman, Mark Haubrich, Mercedes Hernandez, Amber Hirtreiter, Beth Ivanoski, Xochitl Jaminet, Travis Kirkpatrick, Jennifer Kratowicz, Casey Latus, Tiegen Leable, Nicole Lingafelt, DeAnna Lowe, Holly Lowrance, Latiffa Malsack, Julie Mazurkiewicz, Persida Merlos, Jamie Messley, Dawn Montemurro, Samora Nakitare, Christine Nelson, Amber Nye, Valerie Pazera, Gina Pierangeli, Ashley Rellora, Angelica Reyes, Jennifer Roberts, Shadara Robins, Jeshannah Robinson, Alissa Schultz, Sara Seifert, Elona Sigler, Julie Spangler, Ebony Swift, Rebecca TenCate, Jessica Thurber, Kristin Vallee, Jennifer Wamboldt, Shannon Whitten, De’andrea Woods, Amanda Wright, Darin Yankunas Draft Genome Sequence of Synechococcus sp. Strain CB0101, Isolated From the e01111-13 Chesapeake Bay Estuary David Marsan, K. Eric Wommack, Jacques Ravel, Feng Chen Draft Genome Sequence of Saccharopolyspora rectivirgula e01117-13 B. M. Fredrik Pettersson, P. R. Krishna Behra, Satyam Manduva, Sarbashis Das, Santanu Dasgupta, Alok Bhattacharya, Leif A. Kirsebom Genome Sequence of Escherichia coli O157:H7 Strain 2886-75, Associated with the First e01120-13 Reported Case of Human Infection in the United States Fatemeh Sanjar, Tracy H. Hazen, Sadiq M. Shah, Sara S. K. Koenig, Sonia Agrawal, Sean Daugherty, Lisa Sadzewicz, Luke J. Tallon, Mark K. Mammel, Peter Feng, Robert Soderlund, Phillip I. Tarr, Chitrita DebRoy, Edward G. Dudley, Thomas A. Cebula, Jacques Ravel, Claire M. Fraser, David A. Rasko, Mark Eppinger Genome Sequence of Lactobacillus plantarum EGD-AQ4, Isolated from Fermented e01122-13 Product of Northeast India Asifa Qureshi, Yogeshwari Itankar, Ramkrishna Ojha, Manabendra Mandal, Anshuman Khardenavis, Atya Kapley, Hemant J. Purohit Genome Sequence of Pseudomonas aeruginosa Strain LCT-PA41, with Changed e01124-13 Metabolism after Space Flight Chao Liu, Juan Hu, Xiangqun Fang, Duchao Zhang, De Chang, Junfeng Wang, Tianzhi Li, Yinhua Guo, Wenkui Dai, Changting Liu Insight into the First Draft Genome Sequence of the Genus Sediminibacillus, e01133-13 Sediminibacillus halophilus Strain NSP9.3 Rinku Dey, Kamal Krishna Pal, Dharmesh Sherathia, Bhoomika Sukhadiya, Trupti Dalsania, Ilaxi Patel, Kinjal Savsani, Manesh Thomas, Sejal Vanpariya, Mona Mandaliya, Rupal Rupapara, Priya Rawal, Sucheta Ghorai, Sharmila Bhayani, Abhi Shah, Anil Kumar Saxena Draft Genome Sequence of a Moderately Halophilic Bacillus megaterium Strain, MSP20.1, e01134-13 Isolated from a Saltern of the Little Rann of Kutch, India Kamal Krishna Pal, Rinku Dey, Dharmesh Sherathia, Sejal Vanpariya, Ilaxi Patel, Trupti Dalsania, Kinjal Savsani, Bhoomika Sukhadiya, Mona Mandaliya, Manesh Thomas, Sucheta Ghorai, Rupal Rupapara, Priya Rawal, Abhi Shah, Sharmila Bhayani

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Draft Genome Sequence of Petroleum Oil-Degrading Marine Bacterium Pseudomonas e00818-13 taeanensis Strain MS-3, Isolated from a Crude Oil-Contaminated Seashore Sang-Yeop Lee, Seon Hee Kim, Dong-Gi Lee, Seyeon Shin, Sung Ho Yun, Chi-Won Choi, Young-Ho Chung, Jong Soon Choi, Hyung-Yeel Kahng, Seung Il Kim Draft Genome Sequence of Pseudomonas sp. Strain 2-92, a Biological Control Strain e01121-13 Isolated from a Field Plot Under Long-Term Mineral Fertilization Zaky Adam, James Tabi Tambong, Qing Chen, Christopher T. Lewis, C. André Lévesque, Renlin Xu Genome Sequence of the Asiatic Species Borrelia persica e01127-13 Haitham Elbir, Pär Larsson, Johan Normark, Mukunda Upreti, Edward Korenberg, Christer Larsson, Sven Bergström Draft Genome Sequence of Corynebacterium ulcerans FRC58, Isolated from the e01132-13 Bronchitic Aspiration of a Patient in France Andréia do Socorro de Sousa Silva, Rafael Azevedo Baraúna, Pablo Caracciolo Gomes de Sá, Diego Assis das Graças, Adriana Ribeiro Carneiro, Maxime Thouvenin, Vasco Azevedo, Edgar Badell, Nicole Guiso, Artur Luiz da Costa da Silva, Rommel Thiago Jucá Ramos Draft Genome Sequence of Streptomyces niveus NCIMB 11891, Producer of the e01146-13 Aminocoumarin Antibiotic Novobiocin Katrin Flinspach, Christian Rückert, Jörn Kalinowski, Lutz Heide, Alexander Kristian Apel Draft Genome Sequence of Streptomyces roseochromogenes subsp. oscitans DS 12.976, e01147-13 Producer of the Aminocoumarin Antibiotic Clorobiocin Christian Rückert, Jörn Kalinowski, Lutz Heide, Alexander Kristian Apel Draft Genome Sequence of Atrazine-Utilizing Bacteria Isolated from Indian Agricultural e01149-13 Soil Sneha Sagarkar, Pooja Bhardwaj, Trilok C. Yadav, Asifa Qureshi, Anshuman Khardenavis, Hemant J. Purohit, Atya Kapley Complete Genome Sequence of Spiroplasma apis B31T (ATCC 33834), a Bacterium e01151-13 Associated with May Disease of Honeybees (Apis mellifera) Chuan Ku, Wen-Sui Lo, Ling-Ling Chen, Chih-Horng Kuo Genome Sequence of the Mycorrhizal Helper Bacterium Pseudomonas ﬂuorescens BBc6R8 e01152-13 A. Deveau, H. Gross, E. Morin, T. Karpinets, S. Utturkar, S. Mehnaz, F. Martin, P. Frey-Klett, J. Labbé Draft Genome Sequence of Lactobacillus plantarum 2165 e01179-13 Andrey V. Karlyshev, Vyacheslav M. Abramov Draft Genome Sequence of Asaia sp. Strain SF2.1, an Important Member of the e01202-13 Microbiome of Anopheles Mosquitoes Jackie L. Shane, Nicholas J. Bongio, Guido Favia, David J. Lampe Draft Genome Sequence of the Bioelectricity-Generating and Dye-Decolorizing Bacterium e00992-13 Proteus hauseri Strain ZMd44 Nan Wang, I-Son Ng, Po Ting Chen, Yuzhe Li, Yi-Chung Chen, Bor-Yann Chen, Yinghua Lu

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Draft Genome Sequence of Rhodobacter sp. Strain CACIA 14H1, a Heterotrophic e01116-13 Bacterium Obtained from a Nonaxenic Culture of a Cyanobium Species Alex Ranieri Jerônimo Lima, Andrei Santos Siqueira, Bruno Garcia Simões dos Santos, Fábio Daniel Florêncio da Silva, Davi Toshio Inada, Clayton Pereira Lima, Jedson Ferreira Cardoso, João Lídio S. G. Vianez-Júnior, Márcio Roberto Teixeira Nunes, Evonnildo Costa Gonçalves Complete Genome Sequence of Hyphomicrobium nitrativorans Strain NL23, a e01165-13 Denitrifying Bacterium Isolated from Biofilm of a Methanol-Fed Denitrification System Treating Seawater at the Montreal Biodome Christine Martineau, Céline Villeneuve, Florian Mauffrey, Richard Villemur Genome Sequence of the Relapsing Fever Borreliosis Species Borrelia hispanica e01171-13 Haitham Elbir, Pär Larsson, Mukunda Upreti, Johan Normark, Sven Bergström Complete Genome Sequence of Cronobacter sakazakii Strain CMCC 45402 e01139-13 Zhijing Zhao, Lei Wang, Bin Wang, Haoyu Liang, Qiang Ye, Ming Zeng Genome Sequence of Lactococcus lactis subsp. lactis bv. diacetylactis LD61 e01176-13 Hélène Falentin, Delphine Naquin, Valentin Loux, Frédérique Barloy-Hubler, Pascal Loubière, Sébastien Nouaille, Dominique Lavenier, Pascal Le Bourgeois, Patrice François, Jacques Schrenzel, David Hernandez, Sergine Even, Yves Le Loir Draft Genome Sequences of 11 Staphylococcus epidermidis Strains Isolated from Wild e01148-13 Mouse Species Jun Wang, Sven Kuenzel, John F. Baines The Genome of the Predominant Equine Lactobacillus Species, Lactobacillus equi,Is e01155-13 Reflective of Its Lifestyle Adaptations to an Herbivorous Host Michelle M. O’Donnell, Hugh M. B. Harris, Paul W. O’Toole, R. Paul Ross Draft Genome Sequence of Kurthia huakuii LAM0618T, an Organic-Pollutant-Degrading e01158-13 Strain Isolated from Biogas Slurry Zhiyong Ruan, Yanwei Wang, Jinlong Song, Yi Zhai, Chi Zhang, Chao Chen, Yanting Li, Bingqiang Zhao, Bin Zhao Genome Sequence of Martelella sp. Strain AD-3, a Moderately Halophilic Polycyclic e01189-13 Aromatic Hydrocarbon-Degrading Bacterium Changzheng Cui, Pengpeng Li, Gao Liu, Hongzhi Tang, Kuangfei Lin, Qishi Luo, Shanshan Liu, Ping Xu, Yongdi Liu Genomic Sequencing of Two Coffee-Infecting Strains of Xylella fastidiosa Isolated from e01190-13 Brazil Valquíria C. Alencar, Deibs Barbosa, Daiene S. Santos, Ana Cláudia F. Oliveira, Regina C. de Oliveira, Luiz R. Nunes Genome Sequence Analysis of the Biogenic Amine-Degrading Strain Lactobacillus casei 5b e01199-13 Victor Ladero, Ana Herrero-Fresno, Noelia Martinez, Beatriz del Río, Daniel M. Linares, María Fernández, María Cruz Martín, Miguel A. Alvarez Draft Genome Sequence of Blastomonas sp. Strain CACIA 14H2, a Heterotrophic e01200-13 Bacterium Associated with Cyanobacteria Alex Ranieri Jerônimo Lima, Andrei Santos Siqueira, Bruno Garcia Simões dos Santos, Fábio Daniel Florêncio da Silva, Clayton Pereira Lima, Jedson Ferreira Cardoso, João Lídio S. G. Vianez-Júnior, Márcio Roberto Teixeira Nunes, Evonnildo Costa Gonçalves

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Draft Genome Sequence of Frankia sp. Strain CcI6, a Salt-Tolerant Nitrogen-Fixing e01205-13 Actinobacterium Isolated from the Root Nodule of Casuarina cunninghamiana Samira R. Mansour, Rediet Oshone, Sheldon G. Hurst IV, Krystalynne Morris, W. Kelley Thomas, Louis S. Tisa Draft Genome Sequences of Type Strain Sediminibacterium salmoneum NJ-44 and e01073-13 Sediminibacterium sp. Strain C3, a Novel Strain Isolated from Activated Sludge Joaquín M. Ayarza, Eva L. M. Figuerola, Leonardo Erijman Whole-Genome Sequences of Streptococcus thermophilus Strains TH1435 and TH1436, e01129-13 Isolated from Raw Goat Milk Laura Treu, Veronica Vendramin, Barbara Bovo, Stefano Campanaro, Viviana Corich, Alessio Giacomini Draft Genome Sequence of the Model Naphthalene-Utilizing Organism Pseudomonas e01161-13 putida OUS82 Martin Tay, Dan Roizman, Yehuda Cohen, Tim Tolker-Nielsen, Michael Givskov, Liang Yang Complete Genome Sequence of Sterol-Transforming Mycobacterium neoaurum Strain e01177-13 VKM Ac-1815D Victoriya Y. Shtratnikova, Eugeny Y. Bragin, Dmitry V. Dovbnya, Yury A. Pekov, Mikhail I. Schelkunov, Nicolai Strizhov, Tanya V. Ivashina, Vasily V. Ashapkin, Marina V. Donova Genome Sequence of the Small-Colony Variant Pseudomonas aeruginosa MH27, Isolated e01174-13 from a Chronic Urethral Catheter Infection Petra Tielen, Daniel Wibberg, Jochen Blom, Nathalie Rosin, Ann-Kathrin Meyer, Boyke Bunk, Max Schobert, Reinhilde Tüpker, Sarah Schatschneider, Christian Rückert, Andreas Albersmeier, Alexander Goesmann, Frank-Jörg Vorhölter, Dieter Jahn, Alfred Pühler Genome Sequence of Bacillus sp. Strain FJAT-14515 e01123-13 Guohong Liu, Bo Liu, Weiqi Tang, Jianmei Che, Yingzhi Lin, Yujing Zhu, Mingxing Su, Jianyang Tang Complete Genome Sequence of Pseudomonas aeruginosa MTB-1, Isolated from a e01130-13 Microbial Community Enriched by the Technical Formulation of Hexachlorocyclohexane Yoshiyuki Ohtsubo, Takuya Sato, Kouhei Kishida, Michro Tabata, Yoshitoshi Ogura, Tetsuya Hayashi, Masataka Tsuda, Yuji Nagata Draft Genome Sequence of Clostridium botulinum Type B Strain Osaka05, Isolated from e01010-13 an Infant Patient with Botulism in Japan Yoshihiko Sakaguchi, Koji Hosomi, Jumpei Uchiyama, Yoshitoshi Ogura, Kaoru Umeda, Masakiyo Sakaguchi, Tomoko Kohda, Masafumi Mukamoto, Naoaki Misawa, Shigenobu Matsuzaki, Tetsuya Hayashi, Shunji Kozaki Complete Genome Sequence of Acinetobacter baumannii ZW85-1 e01083-13 Xin Wang, Zhewen Zhang, Qiong Hao, Jiayan Wu, Jingfa Xiao, Huaiqi Jing Draft Genome Sequence of the Alkaliphilic and Xylanolytic Paenibacillus sp. Strain JCM e01144-13 10914, Isolated from the Gut of a Soil-Feeding Termite Moriya Ohkuma, Masahiro Yuki, Kenshiro Oshima, Wataru Suda, Yumi Oshida, Keiko Kitamura, Toshiya Iida, Masahira Hattori

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Whole-Genome Sequencing of Salmonella enterica subsp. enterica Serovar Cubana e01184-13 Strains Isolated from Agricultural Sources Faiza H. Benahmed, Gopal R. Gopinath, Hua Wang, Junia Jean-Gilles Beaubrun, Christopher Grim, Chorng-Ming Cheng, Michael McClelland, Sherry Ayers, Jason Abbott, Prerak Desai, Jonathan G. Frye, George Weinstock, Thomas S. Hammack, Darcy E. Hanes, Mark A. Rasmussen, Maureen K. Davidson Draft Genome Sequences of a Phylogenetically Diverse Suite of Pseudomonas syringae e01195-13 Strains from Multiple Source Populations David A. Baltrus, Scott Yourstone, Abigail Lind, Caroline Guilbaud, David C. Sands, Corbin D. Jones, Cindy E. Morris, Jeffrey L. Dangl Genome Sequence of Youngiibacter fragilis, the Type Strain of the Genus Youngiibacter e01183-13 Colin B. Wawrik, Amy V. Callaghan, Blake W. Stamps, Boris Wawrik Complete Genome Sequence of the Sugar Cane Endophyte Pseudomonas aurantiaca PB- e01108-13 St2, a Disease-Suppressive Bacterium with Antifungal Activity toward the Plant Pathogen Colletotrichum falcatum Samina Mehnaz, Judith S. Bauer, Harald Gross Draft Genome Sequence of a Human-Associated Isolate of Methanobrevibacter e01181-13 arboriphilicus, the Lowest-G؉C-Content Archaeon Saber Khelaiﬁa, Marc Garibal, Catherine Robert, Didier Raoult, Michel Drancourt Complete Genome Sequence of Chlamydia trachomatis Ocular Serovar C Strain TW-3 e01204-13 Vítor Borges, Miguel Pinheiro, Luís Vieira, Daniel A. Sampaio, Alexandra Nunes, Maria J. Borrego, João P. Gomes Metagenomic Sequencing of Two Salton Sea Microbiomes e01208-13 Erik R. Hawley, Wendy Schackwitz, Matthias Hess Draft Genome Sequence of Enterococcus faecalis Strain PF3, Isolated from Adélie Penguin e01209-13 Feces from Antarctica Robert J. Spence, Ana Pavasovic, James J. Smith, Peter J. Prentis Metagenome Sequencing of the Prokaryotic Microbiota of the Hypersaline and e01212-13 Meromictic Soap Lake, Washington Erik R. Hawley, Matthias Hess Complete Genome Sequence of the Thermophilic Polychlorinated Biphenyl Degrader e01213-13 Geobacillus sp. Strain JF8 (NBRC 109937) Masaki Shintani, Yoshiyuki Ohtsubo, Kohei Fukuda, Akira Hosoyama, Shoko Ohji, Atsushi Yamazoe, Nobuyuki Fujita, Yuji Nagata, Masataka Tsuda, Takashi Hatta, Kazuhide Kimbara Genome Sequence of a Helicobacter pylori Strain Isolated from a Mexican Patient with e01214-13 Intestinal Gastric Cancer Alfonso Méndez-Tenorio, Violeta Larios-Serrato, Gabriela Edith Olguín-Ruiz, Carlos Javier Sánchez-Vallejo, Roberto Carlos Torres-López, Francisco Avilés-Jiménez, Margarita Camorlinga-Ponce, Javier Torres Draft Genome Sequence of Brevibacillus panacihumi Strain W25, a Halotolerant e01215-13 Hydrocarbon-Degrading Bacterium Xinxin Wang, Decai Jin, Lisha Zhou, Liang Wu, Wei An, Yu Chen, Lin Zhao

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Complete Genome Sequence of Paenibacillus polymyxa CR1, a Plant Growth-Promoting e01218-13 Bacterium Isolated from the Corn Rhizosphere Exhibiting Potential for Biocontrol, Biomass Degradation, and Biofuel Production Alexander W. Eastman, Brian Weselowski, Naeem Nathoo, Ze-Chun Yuan Complete Genome Sequence of Salmonella enterica Serovar Agona Pulsed-Field Type e01219-13 SAGOXB.0066, Cause of a 2008 Pan-European Outbreak Matthew P. McCusker, Karsten Hokamp, James F. Buckley, Patrick G. Wall, Marta Martins, Séamus Fanning Genome Sequence of Pyrethroid-Degrading Bacterium Rhodopseudomonas palustris e01228-13 Strain JSC-3b Songbai Zhang, Xiangwen Luo, Ju’e Cheng, Jing Peng, Deyong Zhang, Yong Liu Whole-Genome Sequencing of Erwinia amylovora Strains from Mexico Detects Single e01229-13 Nucleotide Polymorphisms in rpsL Conferring Streptomycin Resistance and in the avrRpt2 Effector Altering Host Interactions Theo H. M. Smits, Víctor M. Guerrero-Prieto, Germán Hernández-Escarcega, Jochem Blom, Alexander Goesmann, Fabio Rezzonico, Brion Duffy, Virginia O. Stockwell Draft Genome Sequence of Williamsia sp. Strain D3, Isolated From the Darwin e01230-13 Mountains, Antarctica Leandro D. Guerrero, Thulani P. Makhalanyane, Jackie M. Aislabie, Don A. Cowan Draft Genome Sequences of Fusobacterium nucleatum ChDC F145, ChDC F174, ChDC e01233-13 F206, and ChDC F300, Isolated from Human Subgingival Plaques in the Republic of Korea Soon-Nang Park, Eugene Cho, Yun Kyong Lim, Hwa-Sook Kim, Dae-Soo Kim, Jaeeun Jung, Jeong-Hun Baek, Eojin Jo, Young-Hyo Chang, Jeong Hwan Shin, Sang-Haeng Choi, Jihee Kang, YongUn Choi, Hong-Seog Park, Hongik Kim, Joong-Ki Kook Draft Genome Sequence of the Microbispora sp. Strain ATCC-PTA-5024, Producing the e01198-13 Lantibiotic NAI-107 Margherita Sosio, Giuseppe Gallo, Roberta Pozzi, Stefania Serina, Paolo Monciardini, Agnieska Bera, Evi Stegmann, Tilmann Weber Complete Genome Sequence of Mycobacterium tuberculosis Strain MtURU-001, Isolated e01220-13 from a Rapidly Progressing Outbreak in Uruguay Gonzalo Greif, Gregorio Iraola, Luisa Berná, Cecilia Coitinho, Carlos M. Rivas, Hugo Naya, Carlos Robello Complete Genome Sequence of Highly Adherent Pseudomonas aeruginosa Small-Colony e01232-13 Variant SCV20265 Denitsa Eckweiler, Boyke Bunk, Cathrin Spröer, Jörg Overmann, Susanne Häussler Draft Genome Sequence of Marinomonas sp. Strain D104, a Polycyclic Aromatic e01211-13 Hydrocarbon-Degrading Bacterium from the Deep-Sea Sediment of the Arctic Ocean Chunming Dong, Xiuhua Bai, Qiliang Lai, Yanrong Xie, Xin Chen, Zongze Shao Genome Sequence of the Thermophilic Cyanobacterium Thermosynechococcus sp. Strain e01060-13 NK55a Sergey Stolyar, Zhenfeng Liu, Vera Thiel, Lynn P. Tomsho, Nicolas Pinel, William C. Nelson, Stephen R. Lindemann, Margie F. Romine, Shin Haruta, Stephan C. Schuster, Donald A. Bryant, Jim K. Fredrickson

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Draft Genome Sequence of Sphingobium sp. Strain C100, a Polycyclic Aromatic e01210-13 Hydrocarbon-Degrading Bacterium from the Deep-Sea Sediment of the Arctic Ocean Chunming Dong, Xiuhua Bai, Qiliang Lai, Yanrong Xie, Xin Chen, Zongze Shao Complete Genome Sequence of Ehrlichia muris Strain AS145T, a Model Monocytotropic e01234-13 Ehrlichia Strain Nagaraja R. Thirumalapura, Xiang Qin, Jeeba A. Kuriakose, David H. Walker Complete Genome Sequence of Mycoplasma ovis Strain Michigan, a Hemoplasma of e01235-13 Sheep with Two Distinct 16S rRNA Genes Pierre L. Deshuillers, Andrea P. Santos, Naíla C. do Nascimento, Joseph A. Hampel, Ingrid L. Bergin, Melissa C. Dyson, Joanne B. Messick Draft Genome Sequence of Urease-Producing Sporosarcina pasteurii with Potential e01256-13 Application in Biocement Production Pradeep Kumar Tiwari, Kandarp Joshi, Rakhshinda Rehman, Vivek Bhardwaj, K. V. Shamsudheen, Sridhar Sivasubbu, Vinod Scaria Draft Genome Sequence of Pseudomonas nitroreducens Strain TX1, Which Degrades e01262-13 Nonionic Surfactants and Estrogen-Like Alkylphenols Shir-Ly Huang, Hsin Chen, Anyi Hu, Nguyen Ngoc Tuan, Chang-Ping Yu Draft Genome Sequence of the Gammaproteobacterial Strain MOLA455, a Representative e01203-13 of a Ubiquitous Proteorhodopsin-Producing Group in the Ocean Alicia Courties, Thomas Riedel, Michael Jarek, Maria Papadatou, Laurent Intertaglia, Philippe Lebaron, Marcelino T. Suzuki Draft Genome Sequence of Pseudomonas chlororaphis YL-1, a Biocontrol Strain e01225-13 Suppressing Plant Microbial Pathogens Youzhou Liu, Shi-En Lu, Sonya M. Baird, Junqing Qiao, Yan Du Complete Genome Sequence of Pseudomonas sp. Strain TKP, Isolated from a ␥- e01241-13 Hexachlorocyclohexane-Degrading Mixed Culture Yoshiyuki Ohtsubo, Kouhei Kishida, Takuya Sato, Michiro Tabata, Toru Kawasumi, Yoshitoshi Ogura, Tetsuya Hayashi, Masataka Tsuda, Yuji Nagata Draft Genome Sequences of Three Strains of Bacteroides pyogenes Isolated from a Cat and e01242-13 Swine Mitsuo Sakamoto, Kenshiro Oshima, Wataru Suda, Keiko Kitamura, Toshiya Iida, Masahira Hattori, Moriya Ohkuma Draft Genome Sequences of Three Alkaliphilic Bacillus Strains, Bacillus wakoensis JCM e01258-13 9140T, Bacillus akibai JCM 9157T, and Bacillus hemicellulosilyticus JCM 9152T Masahiro Yuki, Kenshiro Oshima, Wataru Suda, Yumi Oshida, Keiko Kitamura, Toshiya Iida, Masahira Hattori, Moriya Ohkuma Draft Genome Sequence of Bacillus thuringiensis Strain BrMgv02-JM63, a Chitinolytic e01264-13 Bacterium Isolated from Oil-Contaminated Mangrove Soil in Brazil Joelma Marcon, Rodrigo Gouvêa Taketani, Francisco Dini-Andreote, Giulia Inocêncio Mazzero, Fabio Lino Soares Junior, Itamar Soares Melo, João Lúcio Azevedo, Fernando Dini Andreote Draft Genome Sequence of the Aquatic Phosphorus-Solubilizing and -Mineralizing e01265-13 Bacterium Bacillus sp. Strain CPSM8 Nilanjan Maitra, William B. Whitman, Saravanaraj Ayyampalayam, Srikanta Samanta, Keka Sarkar, Chinmay Bandopadhyay, M. Aftabuddin, Anil P. Sharma, Sanjib K. Manna

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Draft Genome Sequence of a Mycobacterium avium Complex Isolate from a Broadbill e01268-13 Bird John P. Bannantine, Darrell O. Bayles, Suelee Robbe-Austerman, Angela M. Burrell, Judith R. Stabel Genome Sequence of the Emerging Plant Pathogen Dickeya solani Strain RNS 08.23.3.1A e01270-13 Slimane Khayi, Samuel Mondy, Amélie Beury-Cirou, Mohieddine Moumni, Valérie Hélias, Denis Faure Draft Genome Sequence of Gordonia alkanivorans Strain CGMCC6845, a Halotolerant e01274-13 Hydrocarbon-Degrading Bacterium Xinxin Wang, Decai Jin, Lisha Zhou, Liang Wu, Wei An, Lin Zhao Draft Genome Sequence of Pseudoalteromonas sp. Strain NW 4327 (MTCC 11073, DSM e00001-14 25418), a Pathogen of the Great Barrier Reef Sponge Rhopaloeides odorabile Jayanta D. Choudhury, Arnab Pramanik, Nicole S. Webster, Lyndon E. Llewellyn, Ratan Gachhui, Joydeep Mukherjee Draft Genome Sequence of Advenella kashmirensis Strain W13003, a Polycyclic Aromatic e00003-14 Hydrocarbon-Degrading Bacterium Xinxin Wang, Decai Jin, Lisha Zhou, Liang Wu, Wei An, Lin Zhao First Complete Genome Sequence of Escherichia albertii Strain KF1, a New Potential e00004-14 Human Enteric Pathogen Krzysztof Fiedoruk, Tamara Daniluk, Izabela Swiecicka, Emilia Murawska, Malgorzata Sciepuk, Katarzyna Leszczynska Draft Genome Sequence of Kocuria palustris PEL e01261-13 Gaurav Sharma, Indu Khatri, Srikrishna Subramanian Draft Genome Sequence of the Filamentous Cyanobacterium Leptolyngbya sp. Strain e01166-13 Heron Island J, Exhibiting Chromatic Acclimation Robin Paul, Robert E. Jinkerson, Kristina Buss, Jason Steel, Remus Mohr, Wolfgang R. Hess, Min Chen, Petra Fromme First Closed Genome Sequence of Campylobacter fetus subsp. venerealis bv. intermedius e01246-13 Linda van der Graaf-van Bloois, William G. Miller, Emma Yee, James L. Bono, Martine Rijnsburger, Carlos Campero, Jaap A. Wagenaar, Birgitta Duim Complete Genome Sequence of Mycobacterium avium subsp. paratuberculosis, Isolated e01252-13 from Human Breast Milk John P. Bannantine, Lingling Li, Michael Mwangi, Rebecca Cote, Juan A. Raygoza Garay, Vivek Kapur Draft Genome Sequence of Lactobacillus namurensis Chizuka 01, Isolated from e01263-13 Nukadoko, a Pickling Bed of Fermented Rice Bran Keita Kato, Hidehiro Toh, Naoshige Sakamoto, Kazuki Mori, Kosuke Tashiro, Naruhiro Hibi, Kenji Sonomoto, Jiro Nakayama Draft Genome Sequence of Clostridium ultunense Strain BS (DSMZ 10521), Recovered e01269-13 from a Mixed Culture Yongjun Wei, Haokui Zhou, Lei Zhang, Jun Zhang, Yuezhu Wang, Shengyue Wang, Zhihua Zhou, Xing Yan

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Draft Genome Sequence of Petroleum Hydrocarbon-Degrading Pseudomonas aeruginosa e00002-14 Strain PK6, Isolated from the Saurashtra Region of Gujarat, India P. A. Patel, V. V. Kothari, C. R. Kothari, P. R. Faldu, K. K. Domadia, C. M. Rawal, H. D. Bhimani, N. R. Parmar, N. M. Nathani, P. G. Koringa, C. G. Joshi, R. K. Kothari Genome Sequences of Campylobacter jejuni 81-176 Variants with Enhanced Fitness e00006-14 Relative to the Parental Strain in the Chicken Gastrointestinal Tract Jeremiah G. Johnson, Samuel Carpentier, Rachel R. Spurbeck, Sukhinder K. Sandhu, Victor J. DiRita Draft Genome Sequence of the Polyextremophilic Halorubrum sp. Strain AJ67, Isolated e01096-13 from Hyperarsenic Lakes in the Argentinian Puna Germán F. Burguener, Marcos J. Maldonado, Santiago Revale, Darío Fernández Do Porto, Nicolás Rascován, Martín Vázquez, María Eugenia Farías, Marcelo A. Marti, Adrián Gustavo Turjanski Draft Genome and Plasmid Sequences of Chlamydia pneumoniae Strain B21 from an e01223-13 Australian Endangered Marsupial, the Western Barred Bandicoot Eileen Roulis, Nathan Bachmann, Adam Polkinghorne, Margaret Hammerschlag, Stephan Kohlhoff, Peter Timms First Draft Genome Sequence of a Member of the Genus Planomicrobium, Isolated from e01259-13 the Chandra River, India Richa Salwan, Mohit Kumar Swarnkar, Anil Kumar Singh, Ramesh Chand Kasana Genome Sequence of Streptomyces exfoliatus DSMZ 41693, a Source of Poly(3- e01272-13 Hydroxyalkanoate)-Degrading Enzymes Virginia Martínez, Daniel Hormigo, Carlos del Cerro, Patricia Gómez de Santos, Javier García-Hidalgo, Miguel Arroyo, Auxiliadora Prieto, José Luis García, Isabel de la Mata Draft Genome Sequence of Textile Azo Dye-Decolorizing and -Degrading Pseudomonas e00019-14 aeruginosa Strain PFK10, Isolated from the Common Efﬂuent Treatment Plant of the Ankleshwar Industrial Area of Gujarat, India P. R. Faldu, V. V. Kothari, C. R. Kothari, C. M. Rawal, K. K. Domadia, P. A. Patel, H. D. Bhimani, V. H. Raval, N. R. Parmar, N. M. Nathani, P. G. Koringa, C. G. Joshi, R. K. Kothari Genome Sequence of Serratia plymuthica RVH1, Isolated from a Raw Vegetable- e00021-14 Processing Line Rob Van Houdt, Daniel Van der Lelie, Javier A. Izquierdo, Abram Aertsen, Joleen Masschelein, Rob Lavigne, Chris W. Michiels, Saﬁyh Taghavi Draft Genome Sequence of Enterococcus faecium PC4.1, a Clade B Strain Isolated from e00022-14 Human Feces Páraic Ó Cuív, Eline S. Klaassens, Wendy J. Smith, Stanislas Mondot, A. Scott Durkin, Derek M. Harkins, Les Foster, Jamison McCorrison, Manolito Torralba, Karen E. Nelson, Mark Morrison Genome Sequences of Four Acinetobacter baumannii-A. calcoaceticus Complex Isolates e00026-14 from Combat-Related Infections Sustained in the Middle East Patrick Ketter, M. Neal Guentzel, James P. Chambers, James Jorgensen, Clinton K. Murray, Andrew P. Cap, Jieh-Juen Yu, Mark Eppinger, Bernard P. Arulanandam

January/February 2014 Volume 2 Issue 1 genomea.asm.org xi CONTENTS • JANUARY/FEBRUARY 2014 • VOLUME 2, NO. 1

Draft Genome Sequence of Ralstonia pickettii AU12-08, Isolated from an Intravascular e00027-14 Catheter in Australia Li Zhang, Mark Morrison, Claire M. Rickard Genome Sequence of Legionella anisa, Isolated from a Respiratory Sample, Using an e00031-14 Amoebal Coculture Procedure Isabelle Pagnier, Olivier Croce, Catherine Robert, Didier Raoult, Bernard La Scola Draft Genome Sequence of Syntrophorhabdus aromaticivorans Strain UI, a Mesophilic e01064-13 Aromatic Compound-Degrading Syntroph Masaru K. Nobu, Takashi Narihiro, Hideyuki Tamaki, Yan-Ling Qiu, Yuji Sekiguchi, Tanja Woyke, Lynne Goodwin, Karen W. Davenport, Yoichi Kamagata, Wen-Tso Liu Whole-Genome Shotgun Sequence of Bacillus amyloliquefaciens Strain UASWS BA1, a e00016-14 Bacterium Antagonistic to Plant Pathogenic Fungi F. Lefort, G. Calmin, P. Pelleteret, L. Farinelli, M. Osteras, J. Crovadore Genome Sequence of Fusobacterium nucleatum Strain W1481, a Possible New Subspecies e00009-14 Isolated from a Periodontal Pocket Mia Yang Ang, David Dymock, Joon Liang Tan, Ming Hang Thong, Qin Kai Tan, Guat Jah Wong, Ian C. Paterson, Siew Woh Choo Genome Sequence of Borrelia parkeri, an Agent of Enzootic Relapsing Fever in Western e00018-14 North America Alan G. Barbour, Shelley Campeau Miller The Complete Genome Sequence of Pseudomonas putida NBRC 14164T Conﬁrms High e00029-14 Intraspecies Variation Shoko Ohji, Atsushi Yamazoe, Akira Hosoyama, Keiko Tsuchikane, Takayuki Ezaki, Nobuyuki Fujita Draft Genome Sequence of Root-Colonizing Bacterium Bacillus sp. Strain PTS-394 e00038-14 Junqing Qiao, Youzhou Liu, Xuejie Liang, Yonghong Hu, Yan Du Draft Genome Sequence of a Novel Lactobacillus salivarius Strain Isolated from Piglet e01231-13 Donald A. MacKenzie, Kirsten McLay, Stefan Roos, Jens Walter, David Swarbreck, Nizar Drou, Lisa C. Crossman, Nathalie Juge Draft Genome Sequence of Bacillus subtilis Type Strain B7-S, Which Converts Ferulic e00025-14 Acid to Vanillin Peng Chen, Suyue Li, Lei Yan, Ningbo Wang, Xiaojuan Yan, Hongyu Li Draft Genome Sequence of Burkholderia dolosa PC543 Isolated from Cystic Fibrosis e00043-14 Airways Matthew L. Workentine, Michael G. Surette, Steve P. Bernier Draft Genome Sequence of the Toxic Bloom-Forming Cyanobacterium Aphanizomenon e00044-14 ﬂos-aquae NIES-81 Huansheng Cao, Yohei Shimura, Kawachi Masanobu, Yanbin Yin Metagenomic Sequence of Prokaryotic Microbiota from an Intermediate-Salinity Pond of e00045-14 a Saltern in Isla Cristina, Spain Ana B. Fernández, María José León, Blanca Vera, Cristina Sánchez-Porro, Antonio Ventosa

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Draft Genome Sequences of Six Rhodobacter capsulatus Strains, YW1, YW2, B6, Y262, e00050-14 R121, and DE442 Hao Ding, Michelle M. Moksa, Martin Hirst, J. Thomas Beatty Draft Genome Sequence of the Sulfonamide Antibiotic-Degrading Microbacterium sp. e01113-13 Strain C448 Fabrice Martin-Laurent, Romain Marti, Nicholas Waglechner, Gerard D. Wright, Edward Topp Draft Genome Sequence of Rhodococcus rhodochrous Strain ATCC 21198 e00054-14 Sara A. Shields-Menard, Steven D. Brown, Dawn M. Klingeman, Karl Indest, Dawn Hancock, Jayani J. Wewalwela, W. Todd French, Janet R. Donaldson Draft Genome Sequences of Two Cellulolytic Paenibacillus sp. Strains, MAEPY1 and e00065-14 MAEPY2, from Malaysian Landfill Leachate Patric Chua, Hye-Seung Yoo, Han Ming Gan, Sui-Mae Lee Draft Genome Sequence of Tomitella biformata AHU 1821T, Isolated from a Permafrost e00066-14 Ice Wedge in Alaska Kentaro Funo, Wataru Kitagawa, Michiko Tanaka, Teruo Sone, Kozo Asano, Yoichi Kamagata Genome Sequences of Streptococcus thermophilus Strains MTH17CL396 and e00067-14 M17PTZA496 from Fontina, an Italian PDO Cheese Laura Treu, Veronica Vendramin, Barbara Bovo, Stefano Campanaro, Viviana Corich, Alessio Giacomini Draft Genome Sequence of Serratia marcescens Strain LCT-SM166, a Space Flight Strain e00069-14 with a Specific Carbon Source Utilization Pattern Yajuan Wang, Yu Du, Yanting Yuan, Yinghua Guo, Junfeng Wang, Tianzhi Li, De Chang, Yan Liu, Xuege Jiang, Wenkui Dai, Changting Liu Draft Genome Sequence of Bacteroides reticulotermitis Strain JCM 10512T, Isolated from e00072-14 the Gut of a Termite Masahiro Yuki, Kenshiro Oshima, Wataru Suda, Mitsuo Sakamoto, Toshiya Iida, Masahira Hattori, Moriya Ohkuma Whole-Genome Sequencing of the Nonproteolytic Bacillus anthracis V770-NP1-R Strain e00075-14 Reveals Multiple Mutations in Peptidase Loci Inbar Cohen-Gihon, Ofir Israeli, Adi Beth-Din, Haim Levy, Ofer Cohen, Avigdor Shafferman, Anat Zvi, Theodor Chitlaru Genome Sequence of Pseudomonas azelaica HBP1, Which Catabolizes 2- e01248-13 Hydroxybiphenyl Fungicide José L. García, Daniel Rozas, Carlos del Cerro, Juan Nogales, Magdy El-Said Mohamed, Eduardo Díaz Draft Genome Sequence of an Anaerobic, Thermophilic Bacterium, e00041-14 Thermoanaerobacterium aotearoense SCUT27, Isolated from a Hot Spring in China Hongxia Ai, Junjie Zhang, Mingjun Yang, Pingru Yu, Shuang Li, Mingjun Zhu, Hui Dong, Shengyue Wang, Jufang Wang

January/February 2014 Volume 2 Issue 1 genomea.asm.org xiii CONTENTS • JANUARY/FEBRUARY 2014 • VOLUME 2, NO. 1

Complete Closed Genome Sequences of Three Bibersteinia trehalosi Nasopharyngeal e00084-14 Isolates from Cattle with Shipping Fever Gregory P. Harhay, D. Scott McVey, Sergey Koren, Adam M. Phillippy, Jim Bono, Dayna M. Harhay, Michael L. Clawson, Michael P. Heaton, Carol G. Chitko-McKown, Jonas Korlach, Timothy P. L. Smith Complete Closed Genome Sequences of Four Mannheimia varigena Isolates from Cattle e00088-14 with Shipping Fever Gregory P. Harhay, Robert W. Murray, Brian Lubbers, Dee Griffin, Sergey Koren, Adam M. Phillippy, Dayna M. Harhay, James Bono, Michael L. Clawson, Michael P. Heaton, Carol G. Chitko-McKown, Timothy P. L. Smith Draft Genome Sequence of Pseudomonas moraviensis R28-S e00035-14 Samuel S. Hunter, Hirokazu Yano, Wesley Loftie-Eaton, Julie Hughes, Leen De Gelder, Pieter Stragier, Paul De Vos, Matthew L. Settles, Eva M. Top Draft Genome Sequencing of Methanobrevibacter oralis Strain JMR01, Isolated from the e00073-14 Human Intestinal Microbiota Saber Khelaifia, Marc Garibal, Catherine Robert, Didier Raoult, Michel Drancourt Draft Genome Sequence of Lactobacillus crispatus 2029 e01221-13 Andrey V. Karlyshev, Vyacheslav G. Melnikov, Valentin C. Khlebnikov, Vyacheslav M. Abramov Draft Genome Sequence of Lactobacillus rhamnosus 2166 e01222-13 Andrey V. Karlyshev, Vyacheslav G. Melnikov, Igor V. Kosarev, Vyacheslav M. Abramov Draft Genome Sequence of Salmonella enterica subsp. enterica Serovar Gallinarum Biovar e00028-14 Pullorum Strain FCAV198, a Brazilian Chicken Pathogen Diego F. A. Batista, Oliveiro C. Freitas Neto, Laura R. Leite, Alessandro M. Varani, Flavio M. G. Araujo, Anna Salim, Adriana M. Almeida, Simone A. M. Ribeiro, Guilherme C. Oliveira, Paul A. Barrow, Angelo Berchieri Junior Draft Genome Sequence of Arcobacter cibarius Strain LMG21996T, Isolated from Broiler e00034-14 Carcasses Zaky Adam, Kerri Whiteduck-Leveillee, Michel Cloutier, Wen Chen, Christopher T. Lewis, C. André Lévesque, Edward Topp, David R. Lapen, James T. Tambong, Guylaine Talbot, Izhar U. H. Khan Draft Genome Sequence of the Haloacid-Degrading Burkholderia caribensis Strain MBA4 e00047-14 Yanling Pan, Ka Fai Kong, Jimmy S. H. Tsang The Genome Sequence of Bifidobacterium moukalabense DSM 27321 Highlights the Close e00048-14 Phylogenetic Relatedness with the Bifidobacterium dentium Taxon Gabriele Andrea Lugli, Sabrina Duranti, Christian Milani, Francesca Turroni, Alice Viappiani, Marta Mangifesta, Douwe van Sinderen, Marco Ventura Draft Genome Sequence of Multidrug-Resistant Acinetobacter baumannii Strain MMC4, e00051-14 Isolated from a Patient in Tennessee Sammed N. Mandape, Dana R. Marshall, L. Leon Dent, Siddharth Pratap Genome Sequence of Lactobacillus fabifermentans Strain T30PCM01, Isolated from e00060-14 Fermenting Grape Marc Laura Treu, Veronica Vendramin, Barbara Bovo, Alessio Giacomini, Viviana Corich, Stefano Campanaro xiv genomea.asm.org January/February 2014 Volume 2 Issue 1 CONTENTS • JANUARY/FEBRUARY 2014 • VOLUME 2, NO. 1

Draft Genome Sequence of mc251, a Highly Hydrogen Peroxide-Resistant Mycobacterium e00092-14 smegmatis Mutant Strain Xiaojing Li, Fei Liu, Yongfei Hu, Kaixia Mi Genome Sequence of Staphylococcus aureus Strain LCT-SA67, a Space Flight Strain with e00095-14 Altered Carbon Source Utilization Properties Junfeng Wang, Yinhu Li, Jun Guo, Xuelin Zhang, Yinghua Guo, De Chang, Tianzhi Li, Guogang Xu, Wenkui Dai, Changting Liu Draft Genome Sequence of the Boron-Tolerant and Moderately Halotolerant Bacterium e00097-14 Gracilibacillus boraciitolerans JCM 21714T Iftikhar Ahmed, Kenshiro Oshima, Wataru Suda, Keiko Kitamura, Toshiya Iida, Yoshihiro Ohmori, Toru Fujiwara, Masahira Hattori, Moriya Ohkuma Draft Genome Sequence of Highly Nematicidal Bacillus thuringiensis DB27 e00101-14 Igor Iatsenko, Craig Corton, Derek J. Pickard, Gordon Dougan, Ralf J. Sommer Genome Sequence of Enterococcus faecium Strain LCT-EF297, Which Has Speciﬁc e00102-14 Biochemical Features Li An, Yinhu Li, Zhenhong Chen, De Chang, Xuelin Zhang, Yinghua Guo, Junfeng Wang, Tianzhi Li, Wenkui Dai, Changting Liu Draft Genome Sequence of Salmonella enterica Serovar Typhi Strain STH2370 e00104-14 Camila Valenzuela, Juan A. Ugalde, Guido C. Mora, Sergio Álvarez, Inés Contreras, Carlos A. Santiviago Whole-Genome Sequence of Ralstonia solanacearum P673, a Strain Capable of Infecting e00106-14 Tomato Plants at Low Temperatures Ana M. Bocsanczy, Jose C. Huguet-Tapia, David J. Norman Complete Genome Sequence of the Extreme Thermophile Dictyoglomus thermophilum e00109-14 H-6-12 David A. Coil, Jonathan H. Badger, Heather C. Forberger, Florenta Riggs, Ramana Madupu, Nadia Fedorova, Naomi Ward, Frank T. Robb, Jonathan A. Eisen Draft Genome Sequence of Clostridium straminisolvens Strain JCM 21531T, Isolated from e00110-14 a Cellulose-Degrading Bacterial Community Masahiro Yuki, Kenshiro Oshima, Wataru Suda, Mitsuo Sakamoto, Keiko Kitamura, Toshiya Iida, Masahira Hattori, Moriya Ohkuma Complete Genome Sequence of Mycoplasma bovoculi Strain M165/69T (ATCC 29104) e00115-14 Michael J. Calcutt, Mark F. Foecking Genome Sequence of the Probiotic Strain Lactobacillus rhamnosus (Formerly e00120-14 Lactobacillus casei) LOCK908 Anna Koryszewska-Bagin´ska, Jacek Bardowski, Tamara Aleksandrzak-Piekarczyk Draft Genome Sequence of Extended-Spectrum ␤-Lactamase-Producing Klebsiella e00121-14 pneumoniae Isolated from a Patient in Lebanon Sima Tokajian, Jonathan A. Eisen, Guillaume Jospin, Anna Farra, David A. Coil Draft Genome Sequences of Extended-Spectrum ␤-Lactamase-Producing Escherichia coli e00123-14 Strains Isolated from Patients in Lebanon Sima Tokajian, Jonathan A. Eisen, Guillaume Jospin, Anna Farra, David A. Coil

January/February 2014 Volume 2 Issue 1 genomea.asm.org xv CONTENTS • JANUARY/FEBRUARY 2014 • VOLUME 2, NO. 1

Functional Analysis Using Whole-Genome Sequencing of a Drug-Sensitive e00087-14 Mycobacterium tuberculosis Strain from Peru D. Tarazona, V. Borda, M. Galarza, J. C. Agapito, H. Guio Evidence of Clonal Expansion in the Genome of a Multidrug-Resistant e00089-14 Mycobacterium tuberculosis Clinical Isolate from Peru M. Galarza, D. Tarazona, V. Borda, J. C. Agapito, H. Guio Draft Genome Sequence of Pedobacter sp. Strain V48, Isolated from a Coastal Sand Dune e00094-14 in the Netherlands Adam S. Bitzer, Paolina Garbeva, Mark W. Silby Insight into the Draft Genome Sequence of Human Isolate Lactobacillus rhamnosus e00111-14 LR231, a Bacterium with Probiotic Potential Padma Ambalam, Sheetal Pithva, Charmy Kothari, Ramesh Kothari, Nidhi Parmar, Neelam M. Nathani, Prakash G. Koringa, Chaitanya G. Joshi, J. M. Dave, B. R. M. Vyas

VIRUSES Complete Genome Sequences of Lactobacillus Phages J-1 and PL-1 e00998-13 Maria Eugenia Dieterle, Deborah Jacobs-Sera, Daniel Russell, Graham Hatfull, Mariana Piuri Complete Genome Sequence of a Ranavirus Isolated from Chinese Giant Salamander e01032-13 (Andrias davidianus) Na Wang, Min Zhang, Lifeng Zhang, Hongli Jing, Yulin Jiang, Shaoqiang Wu, Xiangmei Lin Genome Sequence of WAU86/88-1, a New Variant of Vaccinia Virus Lister Strain from e01086-13 Poland Carla Mavian, Alberto López-Bueno, Antonio Alcamí Complete Genome Sequence of the Novel Giant Pseudomonas Phage PaBG e00929-13 Nina N. Sykilinda, Alexander A. Bondar, Anna S. Gorshkova, Lidia P. Kurochkina, Eugene E. Kulikov, Mikhail M. Shneider, Vassily A. Kadykov, Natalia V. Solovjeva, Marsel R. Kabilov, Vadim V. Mesyanzhinov, Valentin V. Vlassov, Valentin V. Drukker, Konstantin A. Miroshnikov Genome Sequence of a Canine Parvovirus Strain, CPV-s5, Prevalent in Southern China e01141-13 Yiping Zhu, Yongliang Huang, Yifei Wang, Keren Chen, Xuefeng Niu, Yongwen Luo, Xiaofeng Guo Whole-Genome Sequences of Two Strains of Porcine Circovirus 2 Isolated from Calves in e01150-13 Germany Mohammad Yahya Halami, Hermann Müller, Jens Böttcher, Thomas W. Vahlenkamp A Circo-Like Virus Isolated from Penaeus monodon Shrimps e01172-13 Hanh T. Pham, Qian Yu, Maude Boisvert, Hanh T. Van, Max Bergoin, Peter Tijssen Full-Genome Sequences of Inﬂuenza A(H1N1)pdm09 Viruses Isolated from Finnish e01004-13 Patients from 2009 to 2013 Triin Lakspere, Janne Tynell, Minttu Kaloinen, Maarten Vanlede, Alun Parsons, Niina Ikonen, Hannimari Kallio-Kokko, Anu Kantele, Pirkko Mattila, Henrikki Almusa, Ilkka Julkunen, Denis Kainov, Laura Kakkola

xvi genomea.asm.org January/February 2014 Volume 2 Issue 1 CONTENTS • JANUARY/FEBRUARY 2014 • VOLUME 2, NO. 1

Genome Sequence of the Sulﬁtobacter sp. Strain 2047-Infecting Lytic Phage ⌽CB2047-B e00945-13 Nana Y. D. Ankrah, Charles R. Budinoff, William H. Wilson, Steven W. Wilhelm, Alison Buchan Population of Endogenous Pararetrovirus Genomes in Carrizo Citrange e01063-13 Avijit Roy, Jonathan Shao, William L. Schneider, John S. Hartung, Ronald H. Brlansky Complete Genome Sequence of Border Disease Virus Genotype 3 Strain Gifhorn e01142-13 Ulrik Fahnøe, Dirk Höper, Horst Schirrmeier, Martin Beer, Thomas Bruun Rasmussen Genome Sequences of Three Novel Bacillus cereus Bacteriophages e01118-13 Julianne H. Grose, Jordan D. Jensen, Bryan D. Merrill, Joshua N. B. Fisher, Sandra H. Burnett, Donald P. Breakwell Revised Genome Sequence of Staphylococcus aureus Bacteriophage K e01173-13 Jason J. Gill Genome Sequence of an Alphabaculovirus Isolated from Choristoneura murinana e01135-13 George F. Rohrmann, Martin A. Erlandson, David A. Theilmann Genome Sequence of a Hepatitis E Virus of Genotype 3e from a Chronically Infected e01156-13 Kidney Transplant Recipient Valérie Moal, Audrey Ferretti, Patricia Devichi, Philippe Colson Whole-Genome Sequence Characterization of a Beak and Feather Disease Virus in a Wild e01243-13 Regent Parrot (Polytelis anthopeplus monarchoides) Subir Sarker, Jade K. Forwood, Seyed A. Ghorashi, David McLelland, Andrew Peters, Shane R. Raidal Complete Genome Sequence of a Porcine Parvovirus Strain Isolated in Central China e01247-13 Lin-Qing Wang, Yan Wang, Long-Biao Chen, Peng-Fei Fu, Hong-Ying Chen, Bao-An Cui F1 and Tbilisi Are Closely Related Brucellaphages Exhibiting Some Distinct Nucleotide e01250-13 Variations Which Determine the Host Speciﬁcity Jens A. Hammerl, Sascha Al Dahouk, Karsten Nöckler, Cornelia Göllner, Bernd Appel, Stefan Hertwig Complete Genome Sequence of Foot-and-Mouth Disease Virus Serotype O Isolated from e01253-13 Bangladesh Munawar Sultana, Mohammad Anwar Siddique, Samina Momtaz, Arafat Rahman, Huzzat Ullah, Shuvro Prokash Nandi, M. Anwar Hossain Complete Genome Sequence of the Pseudomonas aeruginosa Bacteriophage phiIBB-PAA2 e01102-13 Diana P. Pires, Andrew M. Kropinski, Joana Azeredo, Sanna Sillankorva Complete Genome Sequence of the WHO International Standard for HIV-1 RNA e01254-13 Determined by Deep Sequencing Astrid Gall, Clare Morris, Paul Kellam, Neil Berry Genome Sequences of Three Species D Adenoviruses Isolated from AIDS Patients e01267-13 Moustafa Alissa Alkhalaf, Yasir Mohammed A. Al Qurashi, Malcolm Guiver, Robert J. Cooper Complete Genome Sequence of Porcine Encephalomyocarditis Virus from an Aardvark in e00017-14 China Hongtao Chang, Lu Chen, Jun Zhao, Xinwei Wang, Xia Yang, Huixia Yao, Chuanqing Wang

January/February 2014 Volume 2 Issue 1 genomea.asm.org xvii CONTENTS • JANUARY/FEBRUARY 2014 • VOLUME 2, NO. 1

Whole-Genome Sequence of Sungri/96 Vaccine Strain of Peste des Petits Ruminants Virus e00056-14 Manjunath Siddappa, Ravi Kumar Gandham, Vishal Sarsani, Bishnu Prasad Mishra, Bina Mishra, C. G. Joshi, A. P. Sahoo, A. K. Tiwari, Sarath Chandra Janga Complete Genome Sequence of Bluetongue Virus Serotype 1 Circulating in Italy, e00093-14 Obtained through a Fast Next-Generation Sequencing Protocol Alessio Lorusso, Maurilia Marcacci, Massimo Ancora, Iolanda Mangone, Alessandra Leone, Valeria Marini, Cesare Cammà, Giovanni Savini Full Genome Sequence of a Recombinant H1N2 Avian Inﬂuenza Virus Isolated from Wild e00023-14 Waterfowl in the East Dongting Lake Wetland Yun Zhu, Yuesi Huang, Tao Chen, Wenfei Zhu, Changxing Lou, Huahong Wang, Meng Li, Fuqiang Liu, Xingyu Xiang, Linhui Li, Hong Zhang, Yuelong Shu Full-Genome Sequence of Chicken Anemia Virus Strain GXC060821, Isolated from a e00040-14 Guangxi Sanhuang Chicken Zhixun Xie, Xianwen Deng, Liji Xie, Jiabo Liu, Yaoshan Pang, Zhiqin Xie, Qing Fan, Sisi Luo Whole-Genome Sequence of Muju Virus, an Arvicolid Rodent-Borne Hantavirus e00099-14 Jin Goo Lee, Se Hun Gu, Luck Ju Baek, Ok Sarah Shin, Heung-Chul Kim, Terry A. Klein, Richard Yanagihara, Jin-Won Song

xviii genomea.asm.org January/February 2014 Volume 2 Issue 1