Forecasting Population Dynamics of the Black Amur Bream (Megalobrama Terminalis) in a Large Subtropical River Using a Univariate Approach
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The Israeli Journal of Aquaculture – Bamidgeh Xx(X), 20Xx, X-Xx
The Open Access Israeli Journal of Aquaculture – Bamidgeh As from January 2010 The Israeli Journal of Aquaculture - Bamidgeh (IJA) will be published exclusively as an on-line Open Access (OA) quarterly accessible by all AquacultureHub (http://www.aquaculturehub.org) members and registered individuals and institutions. Please visit our website (http://siamb.org.il) for free registration form, further information and instructions. This transformation from a subscription printed version to an on-line OA journal, aims at supporting the concept that scientific peer-reviewed publications should be made available to all, including those with limited resources. The OA IJA does not enforce author or subscription fees and will endeavor to obtain alternative sources of income to support this policy for as long as possible. Editor-in-Chief Published under auspices of Dan Mires The Society of Israeli Aquaculture and Marine Biotechnology (SIAMB), Editorial Board University of HawaiɄɄɄi at Mānoa Library & Rina Chakrabarti Aqua Research Lab, Dept. of Zoology, University of HawaiɄɄɄi at Mānoa University of Delhi, India Aquaculture Program Angelo Colorni National Center for Mariculture, IOLR in association with Eilat, Israel AquacultureHub http://www.aquaculturehub.org Daniel Golani The Hebrew University of Jerusalem Jerusalem, Israel Hillel Gordin Kibbutz Yotveta, Arava, Israel Sheenan Harpaz Agricultural Research Organization Beit Dagan, Gideon Hulata Agricultural Research Organization Beit Dagan, George Wm. Kissil National Center for Mariculture, IOLR, Eilat, Israel Ingrid Lupatsch Swansea University, Singleton Park, Swansea, UK Spencer Malecha Dept. of Human Nutrition, Food & Animal Sciences, CTAHR, University of Hawaii Constantinos Hellenic Center for Marine Research, ISSN 0792 - 156X Mylonas Crete, Greece Amos Tandler National Center for Mariculture, IOLR Israeli Journal of Aquaculture - BAMIGDEH. -
Mitochondrial Genome Variation After Hybridization and Differences in the First and Second Generation Hybrids of Bream Fishes
RESEARCH ARTICLE Mitochondrial Genome Variation after Hybridization and Differences in the First and Second Generation Hybrids of Bream Fishes Wei-Zhuo Zhang1,2, Xue-Mei Xiong1,2, Xiu-Jie Zhang1,2, Shi-Ming Wan1,2, Ning- Nan Guan1,2, Chun-Hong Nie1,2, Bo-Wen Zhao1,2, Chung-Der Hsiao3, Wei-Min Wang1, Ze-Xia Gao1,2* 1 College of Fisheries, Key Lab of Freshwater Animal Breeding, Ministry of Agriculture, Huazhong Agricultural University, Wuhan, Hubei, People’s Republic of China, 2 Freshwater Aquaculture Collaborative a11111 Innovation Center of Hubei Province, Wuhan, People’s Republic of China, 3 Department of Bioscience Technology, Chung Yuan Christian University, Chung-Li, Taiwan * [email protected] Abstract OPEN ACCESS Citation: Zhang W-Z, Xiong X-M, Zhang X-J, Wan S- Hybridization plays an important role in fish breeding. Bream fishes contribute a lot to aqua- M, Guan N-N, Nie C-H, et al. (2016) Mitochondrial culture in China due to their economically valuable characteristics and the present study Genome Variation after Hybridization and Differences included five bream species, Megalobrama amblycephala, Megalobrama skolkovii, Megalo- in the First and Second Generation Hybrids of Bream brama pellegrini, Megalobrama terminalis and Parabramis pekinensis. As maternal inheri- Fishes. PLoS ONE 11(7): e0158915. doi:10.1371/ journal.pone.0158915 tance of mitochondrial genome (mitogenome) involves species specific regulation, we aimed to investigate in which way the inheritance of mitogenome is affected by hybridization Editor: Zuogang Peng, SOUTHWEST UNIVERSITY, CHINA in these fish species. With complete mitogenomes of 7 hybrid groups of bream species being firstly reported in the present study, a comparative analysis of 17 mitogenomes was Received: January 18, 2016 conducted, including representatives of these 5 bream species, 6 first generation hybrids Accepted: June 23, 2016 and 6 second generation hybrids. -
Freshwater Aquatic Biomes GREENWOOD GUIDES to BIOMES of the WORLD
Freshwater Aquatic Biomes GREENWOOD GUIDES TO BIOMES OF THE WORLD Introduction to Biomes Susan L. Woodward Tropical Forest Biomes Barbara A. Holzman Temperate Forest Biomes Bernd H. Kuennecke Grassland Biomes Susan L. Woodward Desert Biomes Joyce A. Quinn Arctic and Alpine Biomes Joyce A. Quinn Freshwater Aquatic Biomes Richard A. Roth Marine Biomes Susan L. Woodward Freshwater Aquatic BIOMES Richard A. Roth Greenwood Guides to Biomes of the World Susan L. Woodward, General Editor GREENWOOD PRESS Westport, Connecticut • London Library of Congress Cataloging-in-Publication Data Roth, Richard A., 1950– Freshwater aquatic biomes / Richard A. Roth. p. cm.—(Greenwood guides to biomes of the world) Includes bibliographical references and index. ISBN 978-0-313-33840-3 (set : alk. paper)—ISBN 978-0-313-34000-0 (vol. : alk. paper) 1. Freshwater ecology. I. Title. QH541.5.F7R68 2009 577.6—dc22 2008027511 British Library Cataloguing in Publication Data is available. Copyright C 2009 by Richard A. Roth All rights reserved. No portion of this book may be reproduced, by any process or technique, without the express written consent of the publisher. Library of Congress Catalog Card Number: 2008027511 ISBN: 978-0-313-34000-0 (vol.) 978-0-313-33840-3 (set) First published in 2009 Greenwood Press, 88 Post Road West, Westport, CT 06881 An imprint of Greenwood Publishing Group, Inc. www.greenwood.com Printed in the United States of America The paper used in this book complies with the Permanent Paper Standard issued by the National Information Standards Organization (Z39.48–1984). 10987654321 Contents Preface vii How to Use This Book ix The Use of Scientific Names xi Chapter 1. -
Guide to Monogenoidea of Freshwater Fish of Palaeartic and Amur Regions
GUIDE TO MONOGENOIDEA OF FRESHWATER FISH OF PALAEARTIC AND AMUR REGIONS O.N. PUGACHEV, P.I. GERASEV, A.V. GUSSEV, R. ERGENS, I. KHOTENOWSKY Scientific Editors P. GALLI O.N. PUGACHEV D. C. KRITSKY LEDIZIONI-LEDIPUBLISHING © Copyright 2009 Edizioni Ledizioni LediPublishing Via Alamanni 11 Milano http://www.ledipublishing.com e-mail: [email protected] First printed: January 2010 Cover by Ledizioni-Ledipublishing ISBN 978-88-95994-06-2 All rights reserved. No part of this publication may be reproduced, stored in a retrieval system, transmitted or utilized in any form or by any means, electonical, mechanical, photocopying or oth- erwise, without permission in writing from the publisher. Front cover: /Dactylogyrus extensus,/ three dimensional image by G. Strona and P. Galli. 3 Introduction; 6 Class Monogenoidea A.V. Gussev; 8 Subclass Polyonchoinea; 15 Order Dactylogyridea A.V. Gussev, P.I. Gerasev, O.N. Pugachev; 15 Suborder Dactylogyrinea: 13 Family Dactylogyridae; 17 Subfamily Dactylogyrinae; 13 Genus Dactylogyrus; 20 Genus Pellucidhaptor; 265 Genus Dogielius; 269 Genus Bivaginogyrus; 274 Genus Markewitschiana; 275 Genus Acolpenteron; 277 Genus Pseudacolpenteron; 280 Family Ancyrocephalidae; 280 Subfamily Ancyrocephalinae; 282 Genus Ancyrocephalus; 282 Subfamily Ancylodiscoidinae; 306 Genus Ancylodiscoides; 307 Genus Thaparocleidus; 308 Genus Pseudancylodiscoides; 331 Genus Bychowskyella; 332 Order Capsalidea A.V. Gussev; 338 Family Capsalidae; 338 Genus Nitzschia; 338 Order Tetraonchidea O.N. Pugachev; 340 Family Tetraonchidae; 341 Genus Tetraonchus; 341 Genus Salmonchus; 345 Family Bothitrematidae; 359 Genus Bothitrema; 359 Order Gyrodactylidea R. Ergens, O.N. Pugachev, P.I. Gerasev; 359 Family Gyrodactylidae; 361 Subfamily Gyrodactylinae; 361 Genus Gyrodactylus; 362 Genus Paragyrodactylus; 456 Genus Gyrodactyloides; 456 Genus Laminiscus; 457 Subclass Oligonchoinea A.V. -
Amur Fish: Wealth and Crisis
Amur Fish: Wealth and Crisis ББК 28.693.32 Н 74 Amur Fish: Wealth and Crisis ISBN 5-98137-006-8 Authors: German Novomodny, Petr Sharov, Sergei Zolotukhin Translators: Sibyl Diver, Petr Sharov Editors: Xanthippe Augerot, Dave Martin, Petr Sharov Maps: Petr Sharov Photographs: German Novomodny, Sergei Zolotukhin Cover photographs: Petr Sharov, Igor Uchuev Design: Aleksey Ognev, Vladislav Sereda Reviewed by: Nikolai Romanov, Anatoly Semenchenko Published in 2004 by WWF RFE, Vladivostok, Russia Printed by: Publishing house Apelsin Co. Ltd. Any full or partial reproduction of this publication must include the title and give credit to the above-mentioned publisher as the copyright holder. No photographs from this publication may be reproduced without prior authorization from WWF Russia or authors of the photographs. © WWF, 2004 All rights reserved Distributed for free, no selling allowed Contents Introduction....................................................................................................................................... 5 Amur Fish Diversity and Research History ............................................................................. 6 Species Listed In Red Data Book of Russia ......................................................................... 13 Yellowcheek ................................................................................................................................... 13 Black Carp (Amur) ...................................................................................................................... -
A Cyprinid Fish
DFO - Library / MPO - Bibliotheque 01005886 c.i FISHERIES RESEARCH BOARD OF CANADA Biological Station, Nanaimo, B.C. Circular No. 65 RUSSIAN-ENGLISH GLOSSARY OF NAMES OF AQUATIC ORGANISMS AND OTHER BIOLOGICAL AND RELATED TERMS Compiled by W. E. Ricker Fisheries Research Board of Canada Nanaimo, B.C. August, 1962 FISHERIES RESEARCH BOARD OF CANADA Biological Station, Nanaimo, B0C. Circular No. 65 9^ RUSSIAN-ENGLISH GLOSSARY OF NAMES OF AQUATIC ORGANISMS AND OTHER BIOLOGICAL AND RELATED TERMS ^5, Compiled by W. E. Ricker Fisheries Research Board of Canada Nanaimo, B.C. August, 1962 FOREWORD This short Russian-English glossary is meant to be of assistance in translating scientific articles in the fields of aquatic biology and the study of fishes and fisheries. j^ Definitions have been obtained from a variety of sources. For the names of fishes, the text volume of "Commercial Fishes of the USSR" provided English equivalents of many Russian names. Others were found in Berg's "Freshwater Fishes", and in works by Nikolsky (1954), Galkin (1958), Borisov and Ovsiannikov (1958), Martinsen (1959), and others. The kinds of fishes most emphasized are the larger species, especially those which are of importance as food fishes in the USSR, hence likely to be encountered in routine translating. However, names of a number of important commercial species in other parts of the world have been taken from Martinsen's list. For species for which no recognized English name was discovered, I have usually given either a transliteration or a translation of the Russian name; these are put in quotation marks to distinguish them from recognized English names. -
Cross-Species Amplification of Microsatellites in Genera
c Indian Academy of Sciences ONLINE RESOURCES Cross-species amplification of microsatellites in genera Megalobrama and Parabramis RUI DU1, DALONG ZHANG1, YIZHOU WANG1, WEIMIN WANG1 and ZEXIA GAO1,2∗ 1College of Fisheries, Key Lab of Agricultural Animal Genetics, Breeding and Reproduction of Ministry of Education/ Key Lab of Freshwater Animal Breeding, Ministry of Agriculture, Huazhong Agricultural University, Wuhan, Hubei 430070, People’s Republic of China 2Freshwater Aquaculture Collaborative Innovation Center of Hubei Province, Wuhan 430070, People’s Republic of China [Du R., Zhang D., Wang Y., Wang W. and Gao Z. 2013 Cross-species amplification of microsatellites in genera Megalobrama and Parabramis. J. Genet. 92, e106–e109. Online only: http://www.ias.ac.in/jgenet/OnlineResources/92/e106.pdf] Introduction for M. pellegrini which has one report about microsatellite development (Wang et al. 2012), there are no microsatellites Genus Megalobrama (subfamily: Cultrinae; family: reported in the other three species from Megalobrama and Cyprinidea), is one of the most economically important Parabramis genera as far as we know. species in Chinese freshwater polyculture system. Accord- In this study, the microsatellite markers from M. ambly- ing to several recent studies, based on morphological data, cephala transcriptome database were chosen to test their the Megalobrama genus includes four valid species: M. utility for cross-species amplification. The obtained polymor- amblycephala, M. pellegrini, M. terminalis and M. skolkovii phic microsatellites in this study could be directly applied (Chen et al. 1998; Xu and Xiong 2008). Another economi- in the genus Megalobrama and Parabramis for facilitating cally important species, P. pekinensis, belongs to the sister large-scale genetic studies on population structures, system- genus Parabramis (Dai et al. -
Identification and Characterization of Micrornas in the Liver of Blunt
International Journal of Molecular Sciences Article Identification and Characterization of MicroRNAs in the Liver of Blunt Snout Bream (Megalobrama amblycephala) Infected by Aeromonas hydrophila Lei Cui 1, Hongtao Hu 2, Wei Wei 1,3, Weimin Wang 1 and Hong Liu 1,3,* 1 College of Fisheries, Key Lab of Freshwater Animal Breeding, Ministry of Agriculture, Huazhong Agricultural University, Wuhan 430070, China; [email protected] (L.C.); [email protected] (W.We.); [email protected] (W.Wa.) 2 Center for Bio-Pesticide Research, Hubei Academy of Agricultural Sciences, Wuhan 430064, China; [email protected] 3 Freshwater Aquaculture Collaborative Innovation Center of Hubei Province, Wuhan 430070, China * Correspondence: [email protected]; Tel.: +86-27-8728-2113 Academic Editor: Céline Audet Received: 6 August 2016; Accepted: 21 November 2016; Published: 25 November 2016 Abstract: MicroRNAs (miRNAs) are small RNA molecules that play key roles in regulation of various biological processes. In order to better understand the biological significance of miRNAs in the context of Aeromonas hydrophila infection in Megalobrama amblycephala, small RNA libraries obtained from fish liver at 0 (non-infection), 4, and 24 h post infection (poi) were sequenced using Illumina deep sequencing technology. A total of 11,244,207, 9,212,958, and 7,939,157 clean reads were obtained from these three RNA libraries, respectively. Bioinformatics analysis identified 171 conserved miRNAs and 62 putative novel miRNAs. The existence of ten randomly selected novel miRNAs was validated by RT-PCR. Pairwise comparison suggested that 61 and 44 miRNAs were differentially expressed at 4 and 24 h poi, respectively. -
The Evolution and Maintenance of Hox Gen in Vertebrates and the Teleost-Specific Genome Duplication
The evolution and maintenance of Hox gen in vertebrates and the teleost-specific genome duplication SHIGEHIRO KURAKU and AXEL MEYER* Lehrstuhl fur Zoologie und Evolutionsbiotogie, Department of Biology, University of Konstanz, Konstanz, Germany ABSTRACT Hox genes are known to specify spatial identities along the anterior-posterior axis during embryogenesis. In vertebrates and most other deuterostomes, they are arranged in sets of uninterrupted clusters on chromosomes, and are in most cases expressed in a "colinear" fashion, in which genes closer to the 3'-end of the Hox clusters are expressed earlier and more anteriorly and genes close to the 5'-end of the clusters later and more posteriorly. In this review, we summarize the current understanding of how Hoxgene clusters have been modified from basal lineages of deuterostomes to diverse taxa of vertebrates. Our parsimony reconstruction of Hox cluster architecture at various stages of vertebrate evolution highlights that the variation in Hox cluster structures among jawed vertebrates is mostly due to secondary lineage-specific gene losses and an additional genome duplication that occurred in the actinopterygian stem lineage, the teleost-specific genome duplication (TSGO). KEY WORDS: co/ineanty, two-round geno7lU! duplication, secondary gene loss Introduction there is a link between this special genomic architecture and the origin of morphological novelties, such as modifications of axial Hox genes are transcription factors that serve crucial roles segmental elements seen in the carapace of turtles (Ohya et aI., during development in particular in embryonic anterior-posterior 2005), loss of limbs in snakes (Cohn and Tickle, 1999), and the (A-P) patterning. In vertebrates and most other deuterostomes, acquisition of jaws in gnathostomes (Cohn, 2002; Takio et aI., Hox genes are arranged in sets of uninterrupted clusters on 2004). -
List of Potential Aquatic Alien Species of the Iberian Peninsula (2020)
Cane Toad (Rhinella marina). © Pavel Kirillov. CC BY-SA 2.0 LIST OF POTENTIAL AQUATIC ALIEN SPECIES OF THE IBERIAN PENINSULA (2020) Updated list of potential aquatic alien species with high risk of invasion in Iberian inland waters Authors Oliva-Paterna F.J., Ribeiro F., Miranda R., Anastácio P.M., García-Murillo P., Cobo F., Gallardo B., García-Berthou E., Boix D., Medina L., Morcillo F., Oscoz J., Guillén A., Aguiar F., Almeida D., Arias A., Ayres C., Banha F., Barca S., Biurrun I., Cabezas M.P., Calero S., Campos J.A., Capdevila-Argüelles L., Capinha C., Carapeto A., Casals F., Chainho P., Cirujano S., Clavero M., Cuesta J.A., Del Toro V., Encarnação J.P., Fernández-Delgado C., Franco J., García-Meseguer A.J., Guareschi S., Guerrero A., Hermoso V., Machordom A., Martelo J., Mellado-Díaz A., Moreno J.C., Oficialdegui F.J., Olivo del Amo R., Otero J.C., Perdices A., Pou-Rovira Q., Rodríguez-Merino A., Ros M., Sánchez-Gullón E., Sánchez M.I., Sánchez-Fernández D., Sánchez-González J.R., Soriano O., Teodósio M.A., Torralva M., Vieira-Lanero R., Zamora-López, A. & Zamora-Marín J.M. LIFE INVASAQUA – TECHNICAL REPORT LIFE INVASAQUA – TECHNICAL REPORT Senegal Tea Plant (Gymnocoronis spilanthoides) © John Tann. CC BY 2.0 5 LIST OF POTENTIAL AQUATIC ALIEN SPECIES OF THE IBERIAN PENINSULA (2020) Updated list of potential aquatic alien species with high risk of invasion in Iberian inland waters LIFE INVASAQUA - Aquatic Invasive Alien Species of Freshwater and Estuarine Systems: Awareness and Prevention in the Iberian Peninsula LIFE17 GIE/ES/000515 This publication is a technical report by the European project LIFE INVASAQUA (LIFE17 GIE/ES/000515). -
Wuchang Bream (Megalobrama Amblycephala) ERSS
Wuchang Bream (Megalobrama amblycephala) Ecological Risk Screening Summary U.S. Fish & Wildlife Service, April 2011 Revised, March 2019 Web Version, 3/12/2020 1 Native Range and Status in the United States Native Range From Froese and Pauly (2019): “Asia: middle reaches of Yangtze River, mainland China. Found in Newshan Lake (a bay of Liangzi Lake with an area of 256 sq km) and Yuli Lake [Li et al. 1993].” Status in the United States No wild populations of Megalobrama amblycephala have been recorded in the United States. No records of M. amblycephala in trade in the United States were found. Means of Introductions in the United States No wild populations of Megalobrama amblycephala have been recorded in the United States. Remarks Another common name used to refer to this species is bluntnose black bream. 1 2 Biology and Ecology Taxonomic Hierarchy and Taxonomic Standing According to Fricke et al. (2019), Megalobrama amblycephala Yih 1955 is the current valid name and original name for this species. From ITIS (2019): Kingdom Animalia Subkingdom Bilateria Infrakingdom Deuterostomia Phylum Chordata Subphylum Vertebrata Infraphylum Gnathostomata Superclass Actinopterygii Class Teleostei Superorder Ostariophysi Order Cypriniformes Superfamily Cyprinoidea Family Cyprinidae Genus Megalobrama Species Megalobrama amblycephala Yih, 1955 Size, Weight, and Age Range From Froese and Pauly (2019): “Max length : 200 cm TL male/unsexed; [Baensch and Riehl 1997]” Environment From Froese and Pauly (2019): “Freshwater; benthopelagic; depth range 5 - 20 m [Shao and Lim 1991]. […] 10°C - 20°C [Baensch and Riehl 1997; assumed to be recommended aquarium temperature]; […]” Climate/Range From Froese and Pauly (2019): “Temperate; […] 32°N - 23°N” 2 Distribution Outside the United States Native From Froese and Pauly (2019): “Asia: middle reaches of Yangtze River, mainland China. -
Inland Fisheries Resource Enhancement and Conservation in Asia Xi RAP PUBLICATION 2010/22
RAP PUBLICATION 2010/22 Inland fisheries resource enhancement and conservation in Asia xi RAP PUBLICATION 2010/22 INLAND FISHERIES RESOURCE ENHANCEMENT AND CONSERVATION IN ASIA Edited by Miao Weimin Sena De Silva Brian Davy FOOD AND AGRICULTURE ORGANIZATION OF THE UNITED NATIONS REGIONAL OFFICE FOR ASIA AND THE PACIFIC Bangkok, 2010 i The designations employed and the presentation of material in this information product do not imply the expression of any opinion whatsoever on the part of the Food and Agriculture Organization of the United Nations (FAO) concerning the legal or development status of any country, territory, city or area or of its authorities, or concerning the delimitation of its frontiers or boundaries. The mention of specific companies or products of manufacturers, whether or not these have been patented, does not imply that these have been endorsed or recommended by FAO in preference to others of a similar nature that are not mentioned. ISBN 978-92-5-106751-2 All rights reserved. Reproduction and dissemination of material in this information product for educational or other non-commercial purposes are authorized without any prior written permission from the copyright holders provided the source is fully acknowledged. Reproduction of material in this information product for resale or other commercial purposes is prohibited without written permission of the copyright holders. Applications for such permission should be addressed to: Chief Electronic Publishing Policy and Support Branch Communication Division FAO Viale delle Terme di Caracalla, 00153 Rome, Italy or by e-mail to: [email protected] © FAO 2010 For copies please write to: Aquaculture Officer FAO Regional Office for Asia and the Pacific Maliwan Mansion, 39 Phra Athit Road Bangkok 10200 THAILAND Tel: (+66) 2 697 4119 Fax: (+66) 2 697 4445 E-mail: [email protected] For bibliographic purposes, please reference this publication as: Miao W., Silva S.D., Davy B.