Guide to Monogenoidea of Freshwater Fish of Palaeartic and Amur Regions
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Dynamic Genetic Diversity and Population Structure of Coreius Guichenoti
ZooKeys 1055: 135–148 (2021) A peer-reviewed open-access journal doi: 10.3897/zookeys.1055.70117 RESEARCH ARTICLE https://zookeys.pensoft.net Launched to accelerate biodiversity research Dynamic genetic diversity and population structure of Coreius guichenoti Dongqi Liu1*, Feng Lan2*, Sicai Xie1, Yi Diao1, Yi Zheng1, Junhui Gong1 1 Sichuan Province Key Laboratory of Characteristic Biological Resources of Dry and Hot River Valley, Pan- zhihua University, Panzhihua, 617000, China 2 Upper Changjiang River Burean of Hydrological and Water Resources Survey, Chongqing, 400000, China Corresponding author: Feng Lan ([email protected]) Academic editor: M.E. Bichuette | Received 14 June 2021 | Accepted 27 July 2021 | Published 11 August 2021 http://zoobank.org/ADECA19A-B689-47AE-971B-42913F28F5CE Citation: Liu D, Lan F, Xie S, Diao Y, Zheng Y, Gong J (2021) Dynamic genetic diversity and population structure of Coreius guichenoti. ZooKeys 1055: 135–148. https://doi.org/10.3897/zookeys.1055.70117 Abstract To investigate the genetic effects on the population of Coreius guichenoti of dam constructions in the upper reaches of the Yangtze River, we analyzed the genetic diversity and population structure of 12 popula- tions collected in 2009 and 2019 using mitochondrial DNA (mtDNA) control regions. There was no significant difference in genetic diversity between 2009 and 2019P ( > 0.05), but the population structure tended to become stronger. Genetic differentiation (FST) among five populations (LX, BB, YB, SF and JA) collected in 2009 was not significant P( > 0.05). However, some populations collected in 2019 were significantly differentiated (P < 0.05), indicating that the population structure has undergone change. -
The Israeli Journal of Aquaculture – Bamidgeh Xx(X), 20Xx, X-Xx
The Open Access Israeli Journal of Aquaculture – Bamidgeh As from January 2010 The Israeli Journal of Aquaculture - Bamidgeh (IJA) will be published exclusively as an on-line Open Access (OA) quarterly accessible by all AquacultureHub (http://www.aquaculturehub.org) members and registered individuals and institutions. Please visit our website (http://siamb.org.il) for free registration form, further information and instructions. This transformation from a subscription printed version to an on-line OA journal, aims at supporting the concept that scientific peer-reviewed publications should be made available to all, including those with limited resources. The OA IJA does not enforce author or subscription fees and will endeavor to obtain alternative sources of income to support this policy for as long as possible. Editor-in-Chief Published under auspices of Dan Mires The Society of Israeli Aquaculture and Marine Biotechnology (SIAMB), Editorial Board University of HawaiɄɄɄi at Mānoa Library & Rina Chakrabarti Aqua Research Lab, Dept. of Zoology, University of HawaiɄɄɄi at Mānoa University of Delhi, India Aquaculture Program Angelo Colorni National Center for Mariculture, IOLR in association with Eilat, Israel AquacultureHub http://www.aquaculturehub.org Daniel Golani The Hebrew University of Jerusalem Jerusalem, Israel Hillel Gordin Kibbutz Yotveta, Arava, Israel Sheenan Harpaz Agricultural Research Organization Beit Dagan, Gideon Hulata Agricultural Research Organization Beit Dagan, George Wm. Kissil National Center for Mariculture, IOLR, Eilat, Israel Ingrid Lupatsch Swansea University, Singleton Park, Swansea, UK Spencer Malecha Dept. of Human Nutrition, Food & Animal Sciences, CTAHR, University of Hawaii Constantinos Hellenic Center for Marine Research, ISSN 0792 - 156X Mylonas Crete, Greece Amos Tandler National Center for Mariculture, IOLR Israeli Journal of Aquaculture - BAMIGDEH. -
Chanodichthys Recurviceps (A Fish, No Common Name) Ecological Risk Screening Summary
Chanodichthys recurviceps (a fish, no common name) Ecological Risk Screening Summary U.S. Fish and Wildlife Service, June 2012 Revised, November 2016 Web Version, 6/18/2018 Photo: H. T. Cheng. Licensed under CC BY-NC. Available: http://naturewatch.org.nz/taxa/187285-Culter-recurviceps. (November 2016). 1 Native Range and Status in the United States Native Range From Zhao and Cui (2011): “Known from Zhu Jiang River (Pearl River) in Guangdong and Guanxi Provinces, and Hainan Province in China.” Status in the United States This species has not been reported in the United States. 1 Means of Introductions in the United States This species has not been reported in the United States. 2 Biology and Ecology Taxonomic Hierarchy and Taxonomic Standing From ITIS (2016): “Kingdom Animalia Subkingdom Bilateria Infrakingdom Deuterostomia Phylum Chordata Subphylum Vertebrata Infraphylum Gnathostomata Superclass Osteichthyes Class Actinopterygii Subclass Neopterygii Infraclass Teleostei Superorder Ostariophysi Order Cypriniformes Superfamily Cyprinoidea Family Cyprinidae Genus Culter Basilewsky, 1855 Species Culter recurviceps (Richardson, 1846)” From Eschmeyer et al. (2016): “recurviceps, Leuciscus Richardson [J.] 1846:295 [Report of the British Association for the Advancement of Science 15th meeting [1845] […]] Canton, China. No types known. Based solely on an illustration by Reeves (see Whitehead 1970:210, Pl. 17a […]). •Valid as Erythroculter recurviceps (Richardson 1846) -- (Lu in Pan et al. 1991:93 […]). •Questionably the same as Culter alburnus Basilewsky 1855 -- (Bogutskaya & Naseka 1996:24 […], Naseka 1998:75 […]). •Valid as Culter recurviceps (Richardson 1846) -- (Luo & Chen in Chen et al. 1998:188 […], Zhang et al. 2016:59 […]). •Valid as Chanodichthys recurviceps (Richardson 1846) -- (Kottelat 2013:87 […]). -
Puntius Snyderi ERSS
Puntius snyderi (a fish, no common name) Ecological Risk Screening Summary U.S. Fish & Wildlife Service, February 2013 Revised, February 2019 Web Version, 8/8/2019 1 Native Range and Status in the United States Native Range From Chang et al. (2006): “Puntius snyderi is a freshwater cyprinid fish discovered by Oshima when he collected the freshwater fishes in Taiwan in 1915-1917. It was mainly distributed in northern and central Taiwan [Oshima 1919] […].” From Chang et al. (2009): “A similar inference was also proposed for Puntius snyderi and P. semifasciolatus in which P. snyderi is a species endemic to Taiwan and P. semifasciolatus is distributed in both China and Taiwan (Chang et al. 2006). These 2 species were proposed to have differentiated in China. After P. snyderi and P. semifasciolatus dispersed to Taiwan, P. snyderi became extinct in China (Chang et al. 2006).” 1 Chen et al. (2013) list Puntius snyderi as previously present on Kinmen Island, Taiwan but that it is currently locally extinct there. Status in the United States No records of Puntius snyderi in the wild or in trade in the United States were found. Means of Introductions in the United States No records of Puntius snyderi in the wild in the United States were found. Remarks No additional remarks. 2 Biology and Ecology Taxonomic Hierarchy and Taxonomic Standing According to Fricke et al. (2019), Puntius snyderi (Oshima 1919) is the current valid and original name of this species. From Bailly (2017): “Biota > Animalia (Kingdom) > Chordata (Phylum) > Vertebrata (Subphylum) > Gnathostomata (Superclass) > […] Actinopterygii (Class) > Cypriniformes (Order) > Cyprinidae (Family) > Barbinae (Subfamily) > Puntius (Genus) > Puntius snyderi (Species)” Some sources refer to this species by a synonym, Barboides snyderi (Forese and Pauly 2019). -
Morphological Variation in Acrossocheilus Hemispinus (Teleostei: Cyprinidae: Barbinae), with Comments on Its Taxonomic Status
Zootaxa 2684: 45–56 (2010) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Article ZOOTAXA Copyright © 2010 · Magnolia Press ISSN 1175-5334 (online edition) Morphological variation in Acrossocheilus hemispinus (Teleostei: Cyprinidae: Barbinae), with comments on its taxonomic status LE-YANG YUAN1, 2 & E ZHANG1* 1 Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, Hubei Province, China 2Zhejiang Museum of Natural History, Hangzhou, 310014, China * Author for correspondence: Tel: +86 27 68780260; fax: +86 27 68780123; e-mail: [email protected] Abstract Differences in coloration and morphology between two subspecies of Acrossocheilus hemispinus were investigated based on museum-stored and freshly-caught specimens. There are marked differences in the coloration of either juveniles or adults, and in sexual dimorphism, between A. h. hemispinus and A. h. cinctus. Multivariate analysis of morphometric data too, shows the two taxa to be distinguishable from each other. Differences in body coloration and morphometric characters coincide with those of the mouthpart structure and the coiling pattern of the intestine in A. h. hemispinus and A. h. cinctus. Morphological distinction, coupled with different habitat and food preferences, supports the taxonomic elevation of the two hitherto subspecific populations of A. hemispinus to species. Key words: Acrossocheilus hemispinus, Acrossocheilus cinctus, subspecific populations, China, taxonomy Introduction The taxonomic distinctions in some species of the cyprinid genus Acrossocheilus are still confusing, despite recent clarification of the misidentifications of the species identified in this genus by Shan et al. (2000) (Kottelat, 1998, 2000; Zhang, 2005; Yuan et al., 2006). A case of such confusion is represented by the uncertain status of A. -
Occasional Papers of the Museum of Zoology University of Michigan Ann Arbor.Michigan
OCCASIONAL PAPERS OF THE MUSEUM OF ZOOLOGY UNIVERSITY OF MICHIGAN ANN ARBOR.MICHIGAN THE CYPRINID DERMOSPHENOTIC AND THE SUBFAMILY RASBORINAE The Cyprinidac, the largest family of fishes, do not lend themselves readily to subfamily classification (Sagemehl, 1891; Regan, 1911 ; Ramaswami, 195513). Nevertheless, it is desirable to divide the family in some way, if only to facilitate investiga- tion. Since Gunther's (1868) basic review of the cyprinids the emphasis in classification has shifted from divisions that are rcadily differentiable to groupings intended to be more nearly phylogenetic. In the course of this change a subfamily classifica- tion has gradually been evolved. Among the most notable contributions to the development of present subfamily concepts are those of Berg (1912), Nikolsky (1954), and Banarescu (e-g. 1968a). The present paper is an attempt to clarify the nature and relationships of one cyprinid subfamily-the Rasborinae. (The group was termed Danioinae by Banarescu, 1968a. Nomen- claturally, Rasborina and Danionina were first used as "family group" names by Giinther; to my knowledge the first authors to include both Rasbora and Danio in a single subfamily with a name bascd on one of these genera were Weber and de Beaufort, 1916, who used Rasborinae.) In many cyprinids, as in most characins, the infraorbital bones form an interconnected series of laminar plates around the lower border of the eye, from the lacrimal in front to the dermo- sphenotic postcrodorsally. This series bears the infraorbital sensory canal, which is usually continued into the cranium above the dcrmosphenotic. The infraorbital chain of laminar plates is generally anchored in position relative to the skull anteriorly and 2 Gosline OCC. -
De Novo Assembly of Schizothorax Waltoni Transcriptome to Identify Immune-Related Genes Cite This: RSC Adv.,2018,8, 13945 and Microsatellite Markers†
RSC Advances View Article Online PAPER View Journal | View Issue De novo assembly of Schizothorax waltoni transcriptome to identify immune-related genes Cite this: RSC Adv.,2018,8, 13945 and microsatellite markers† Hua Ye,ab Zhengshi Zhang,ab Chaowei Zhou,ab Chengke Zhu,ab Yuejing Yang,ab Mengbin Xiang,ab Xinghua Zhou,ab Jian Zhou*c and Hui Luo *ab Schizothorax waltoni (S. waltoni) is one kind of the subfamily Schizothoracinae and an indigenous economic tetraploid fish to Tibet in China. It is rated as a vulnerable species in the Red List of China's Vertebrates, owing to overexploitation and biological invasion. S. waltoni plays an important role in ecology and local fishery economy, but little information is known about genetic diversity, local adaptation, immune system and so on. Functional gene identification and molecular marker development are the first and essential step for the following biological function and genetics studies. For this purpose, the transcriptome from pooled tissues of three adult S. waltoni was sequenced and Creative Commons Attribution-NonCommercial 3.0 Unported Licence. analyzed. Using paired-end reads from the Illumina Hiseq4000 platform, 83 103 transcripts with an N50 length of 2337 bp were assembled, which could be further clustered into 66 975 unigenes with an N50 length of 2087 bp. The majority of the unigenes (58 934, 87.99%) were successfully annotated by 7 public databases, and 15 KEGG pathways of immune-related genes were identified for the following functional research. Furthermore, 19 497 putative simple sequence repeats (SSRs) of 1–6 bp unit length were detected from 14 690 unigenes (21.93%) with an average distribution density of 1 : 3.28 kb. -
Barbo Común – Luciobarbus Bocagei (Steindachner, 1864)
Salvador, A. (2017). Barbo común – Luciobarbus bocagei. En: Enciclopedia Virtual de los Vertebrados Españoles. Sanz, J. J., Elvira, B. (Eds.). Museo Nacional de Ciencias Naturales, Madrid. http://www.vertebradosibericos.org/ Barbo común – Luciobarbus bocagei (Steindachner, 1864) Alfredo Salvador Museo Nacional de Ciencias Naturales (CSIC) Versión 20-10-2017 Versiones anteriores: 20-12-2012 © I. Doadrio ENCICLOPEDIA VIRTUAL DE LOS VERTEBRADOS ESPAÑOLES Sociedad de Amigos del MNCN – MNCN - CSIC Salvador, A. (2017). Barbo común – Luciobarbus bocagei. En: Enciclopedia Virtual de los Vertebrados Españoles. Sanz, J. J., Elvira, B. (Eds.). Museo Nacional de Ciencias Naturales, Madrid. http://www.vertebradosibericos.org/ Sinónimos y combinaciones Barbua bocagei Steindachner, 1864; Barbus barbus bocagei – Lozano Rey, 1935; Barbus capito bocagei – Karaman, 1971; Barbus bocagei - Kottelat, 1997; Messinobarbus bocagei – Bianco, 1998; Luciobarbus bocagei - Kottelat y Freyhof, 2008. Origen y evolución L. bocagei pertenece a un grupo de especies relacionadas con especies del norte de África (Doadrio, 1990); estas afinidades parecen deberse al aislamiento de la Península Ibérica del resto de Europa desde el Oligoceno-Mioceno (Machordom et al., 1995). El aislamiento y evolución de las especies del género Luciobarbus habría tenido lugar durante la formación en el Plioceno-Pleistoceno de las cuencas hidrográficas actuales (Doadrio et al., 2002). L. bocagei y L. comizo se habrían diferenciado del resto de especies ibéricas del género en el Messiniense-Plioceno Inferior, hace unos 3,7-6,9 millones de años (Mesquita et al., 2007). Identificación Se diferencia de otros Luciobarbus por tener el último radio de la aleta dorsal con denticulaciones, que en los adultos ocupan menos de la mitad inferior; aleta dorsal de perfil recto o algo cóncavo; pedúnculo caudal estrecho (Doadrio et al., 2011). -
Mitochondrial Genome Variation After Hybridization and Differences in the First and Second Generation Hybrids of Bream Fishes
RESEARCH ARTICLE Mitochondrial Genome Variation after Hybridization and Differences in the First and Second Generation Hybrids of Bream Fishes Wei-Zhuo Zhang1,2, Xue-Mei Xiong1,2, Xiu-Jie Zhang1,2, Shi-Ming Wan1,2, Ning- Nan Guan1,2, Chun-Hong Nie1,2, Bo-Wen Zhao1,2, Chung-Der Hsiao3, Wei-Min Wang1, Ze-Xia Gao1,2* 1 College of Fisheries, Key Lab of Freshwater Animal Breeding, Ministry of Agriculture, Huazhong Agricultural University, Wuhan, Hubei, People’s Republic of China, 2 Freshwater Aquaculture Collaborative a11111 Innovation Center of Hubei Province, Wuhan, People’s Republic of China, 3 Department of Bioscience Technology, Chung Yuan Christian University, Chung-Li, Taiwan * [email protected] Abstract OPEN ACCESS Citation: Zhang W-Z, Xiong X-M, Zhang X-J, Wan S- Hybridization plays an important role in fish breeding. Bream fishes contribute a lot to aqua- M, Guan N-N, Nie C-H, et al. (2016) Mitochondrial culture in China due to their economically valuable characteristics and the present study Genome Variation after Hybridization and Differences included five bream species, Megalobrama amblycephala, Megalobrama skolkovii, Megalo- in the First and Second Generation Hybrids of Bream brama pellegrini, Megalobrama terminalis and Parabramis pekinensis. As maternal inheri- Fishes. PLoS ONE 11(7): e0158915. doi:10.1371/ journal.pone.0158915 tance of mitochondrial genome (mitogenome) involves species specific regulation, we aimed to investigate in which way the inheritance of mitogenome is affected by hybridization Editor: Zuogang Peng, SOUTHWEST UNIVERSITY, CHINA in these fish species. With complete mitogenomes of 7 hybrid groups of bream species being firstly reported in the present study, a comparative analysis of 17 mitogenomes was Received: January 18, 2016 conducted, including representatives of these 5 bream species, 6 first generation hybrids Accepted: June 23, 2016 and 6 second generation hybrids. -
Iberian Cyprinids: Habitat Requirements and Vulnerabilities
Session 1 Cyprinid species: ecology and constraints Iberian cyprinids: habitat requirements and vulnerabilities 2nd Stakeholder Workshop – Iberia – Lisboa, Portugal 20.03.2019 Francisco Godinho Hidroerg 20/03/2018 Francisco Godinho 1 Setting the scene 22/03/2018 Francisco Godinho 2 Relatively small river catchmentsIberian fluvial systems Douro/Duero is the largest one, with 97 600 km2 Loire – 117 000 km2, Rhinne -185 000 km2, Vistula – 194 000 km2, Danube22/03/2018 – 817 000 km2, Volga –Francisco 1 380 Godinho 000 km2 3 Most Iberian rivers present a mediterranean hydrological regime (temporary rivers are common) Vascão river, a tributary of the Guadiana river 22/03/2018 Francisco Godinho 4 Cyprinidae are the characteristic fish taxa of Iberian fluvial ecosystems, occurring from mountain streams (up to 1000 m in altitude) to lowland rivers Natural lakes are rare in the Iberian Peninsula and most natural freshwater bodies are rivers and streams 22/03/2018 Francisco Godinho 5 Six fish-based river types have been distinguished in Portugal (INAG and AFN, 2012) Type 1 - Northern salmonid streams Type 2 - Northern salmonid–cyprinid trans. streams Type 3 - Northern-interior medium-sized cyprinid streams Type 4 - Northern-interior medium-sized cyprinid streams Type 5 - Southern medium-sized cyprinid streams Type 6 - Northern-coastal cyprinid streams With the exception of assemblages in small northern, high altitude streams, native cyprinids dominate most unaltered fish assemblages, showing a high sucess in the hidrological singular 22/03/2018 -
Phylogeography of Schizopygopsis Stoliczkai (Cyprinidae) in Northwest Tibetan Plateau Area
Received: 11 April 2017 | Revised: 14 August 2017 | Accepted: 17 August 2017 DOI: 10.1002/ece3.3452 ORIGINAL RESEARCH Phylogeography of Schizopygopsis stoliczkai (Cyprinidae) in Northwest Tibetan Plateau area Kunyuan Wanghe1,2,3,4 | Yongtao Tang1,2,3,4 | Fei Tian1,2,4 | Chenguang Feng1,2,3,4 | Renyi Zhang5 | Guogang Li6 | Sijia Liu1,2,3,4 | Kai Zhao1,2,4 1Key Laboratory of Adaptation and Evolution of Plateau Biota, Northwest Institute of Abstract Plateau Biology, Chinese Academy of Schizopygopsis stoliczkai (Cyprinidae, subfamily Schizothoracinae) is one of the major Sciences, Xining, Qinghai, China freshwater fishes endemic to the northwestern margin of the Tibetan Plateau. In the 2Laboratory of Plateau Fish Evolutionary and Functional Genomics, Northwest Institute current study, we used mitochondrial DNA markers cytochrome b (Cyt b) and 16S of Plateau Biology, Chinese Academy of rRNA (16S), as well as the nuclear marker, the second intron of the nuclear beta- actin Sciences, Xining, Qinghai, China gene (Act2), to uncover the phylogeography of S. stoliczkai. In total, we obtained 74 3Qinghai Key Laboratory of Animal Ecological Genomics, Xining, Qinghai, China haplotypes from 403 mitochondrial concatenated sequences. The mtDNA markers 4University of Chinese Academy of Sciences, depict the phylogenetic structures of S. stoliczkai, which consist of clade North and Beijing, China clade South. The split time of the two clades is dated back to 4.27 Mya (95% 5Guizhou Normal University, Guiyang, China HPD = 1.96–8.20 Mya). The estimated split time is earlier than the beginning of the 6Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, ice age of Pleistocene (2.60 Mya), suggesting that the northwestern area of the Tibetan Mengla, China Plateau probably contain at least two glacial refugia for S. -
Diversity and Risk Patterns of Freshwater Megafauna: a Global Perspective
Diversity and risk patterns of freshwater megafauna: A global perspective Inaugural-Dissertation to obtain the academic degree Doctor of Philosophy (Ph.D.) in River Science Submitted to the Department of Biology, Chemistry and Pharmacy of Freie Universität Berlin By FENGZHI HE 2019 This thesis work was conducted between October 2015 and April 2019, under the supervision of Dr. Sonja C. Jähnig (Leibniz-Institute of Freshwater Ecology and Inland Fisheries), Jun.-Prof. Dr. Christiane Zarfl (Eberhard Karls Universität Tübingen), Dr. Alex Henshaw (Queen Mary University of London) and Prof. Dr. Klement Tockner (Freie Universität Berlin and Leibniz-Institute of Freshwater Ecology and Inland Fisheries). The work was carried out at Leibniz-Institute of Freshwater Ecology and Inland Fisheries, Germany, Freie Universität Berlin, Germany and Queen Mary University of London, UK. 1st Reviewer: Dr. Sonja C. Jähnig 2nd Reviewer: Prof. Dr. Klement Tockner Date of defense: 27.06. 2019 The SMART Joint Doctorate Programme Research for this thesis was conducted with the support of the Erasmus Mundus Programme, within the framework of the Erasmus Mundus Joint Doctorate (EMJD) SMART (Science for MAnagement of Rivers and their Tidal systems). EMJDs aim to foster cooperation between higher education institutions and academic staff in Europe and third countries with a view to creating centres of excellence and providing a highly skilled 21st century workforce enabled to lead social, cultural and economic developments. All EMJDs involve mandatory mobility between the universities in the consortia and lead to the award of recognised joint, double or multiple degrees. The SMART programme represents a collaboration among the University of Trento, Queen Mary University of London and Freie Universität Berlin.