Fundamentals for Taxonomic Studies of Fusarium1
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Microbial Community of Olives and Its Potential for Biological Control of Olive Anthracnose
Microbial community of olives and its potential for biological control of olive anthracnose Gilda Conceição Raposo Preto Dissertation presented to the Agricultural School for obtaining a Master's degree in Biotechnological Engineering Supervised by Prof. Dr. Paula Cristina dos Santos Baptista Prof. Dr. José Alberto Pereira Bragança 2016 “The little I know I owe to my ignorance” Orville Mars II Acknowledgment First I would like to thank my supervisor, Professor Dr. Paula Baptista., for your willingness, patience, being a tireless person who always helped me in the best way. Thank you for always required the best of me, and thank you for all your advice and words that helped me in less good times. I will always be grateful. I would like to thank my co-supervisor, Professor Dr. José Alberto Pereira, to be always available for any questions, and all the available help. A very special thank you to Cynthia, for being always there to cheer me up, for all the help and all the advice that I will take with me forever. A big thank you to Gisela, Fátima, Teresa, Nuno, Diogo and Ricardo, because they are simply the best people he could have worked for all the advice, tips and words friends you have given me, thank you. I couldn’t fail to thank those who have always been present in the best and worst moments since the beginning, Diogo, Rui, Cláudia, Sara and Rui. You always believed in me and always gave me on the head when needed, thank you. To Vitor, for never given up and have always been present in the worst moments, for your patience, help and dedication, and because you know always how to cheer me up and make smille. -
Functions, Transmission and Emission of the Canopy Microbiota Tania Fort
Functions, transmission and emission of the canopy microbiota Tania Fort To cite this version: Tania Fort. Functions, transmission and emission of the canopy microbiota. Vegetal Biology. Univer- sité de Bordeaux, 2019. English. NNT : 2019BORD0338. tel-02869590 HAL Id: tel-02869590 https://tel.archives-ouvertes.fr/tel-02869590 Submitted on 16 Jun 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. THÈSE PRESENTÉE POUR OBTENIR LE GRADE DE DOCTEUR DE L’UNIVERSITE DE BORDEAUX ECOLE DOCTORALE SCIENCES ET ENVIRONNEMENTS ECOLOGIE ÉVOLUTIVE, FONCTIONNELLE, ET DES COMMUNAUTÉS Par Tania Fort Fonctions, transmission et émission du microbiote de la canopée Sous la direction de Corinne Vacher Soutenue le 10 décembre 2019 Membres du jury : Mme. Anne-Marie DELORT Directrice de recherche Institut de Chimie de Clermont-Ferrand Rapporteuse M. Stéphane Uroz Directeur de recherche INRA Nancy Rapporteur Mme. Patricia Luis Maître de conférence Université de Lyon 1 Rapporteuse Mme. Annabel Porté Directrice de recherche INRA Bordeaux Présidente Mme. Corinne Vacher Directrice de recherche INRA Bordeaux Directrice Fonctions, transmission et émission du microbiote de la canopée. Les arbres interagissent avec des communautés microbiennes diversifiées qui influencent leur fitness et le fonctionnement des écosystèmes terrestres. -
REPORT on APPLES – Fruit Pathway and Alert List
EU project number 613678 Strategies to develop effective, innovative and practical approaches to protect major European fruit crops from pests and pathogens Work package 1. Pathways of introduction of fruit pests and pathogens Deliverable 1.3. PART 5 - REPORT on APPLES – Fruit pathway and Alert List Partners involved: EPPO (Grousset F, Petter F, Suffert M) and JKI (Steffen K, Wilstermann A, Schrader G). This document should be cited as ‘Wistermann A, Steffen K, Grousset F, Petter F, Schrader G, Suffert M (2016) DROPSA Deliverable 1.3 Report for Apples – Fruit pathway and Alert List’. An Excel file containing supporting information is available at https://upload.eppo.int/download/107o25ccc1b2c DROPSA is funded by the European Union’s Seventh Framework Programme for research, technological development and demonstration (grant agreement no. 613678). www.dropsaproject.eu [email protected] DROPSA DELIVERABLE REPORT on Apples – Fruit pathway and Alert List 1. Introduction ................................................................................................................................................... 3 1.1 Background on apple .................................................................................................................................... 3 1.2 Data on production and trade of apple fruit ................................................................................................... 3 1.3 Pathway ‘apple fruit’ ..................................................................................................................................... -
EU Project Number 613678
EU project number 613678 Strategies to develop effective, innovative and practical approaches to protect major European fruit crops from pests and pathogens Work package 1. Pathways of introduction of fruit pests and pathogens Deliverable 1.3. PART 7 - REPORT on Oranges and Mandarins – Fruit pathway and Alert List Partners involved: EPPO (Grousset F, Petter F, Suffert M) and JKI (Steffen K, Wilstermann A, Schrader G). This document should be cited as ‘Grousset F, Wistermann A, Steffen K, Petter F, Schrader G, Suffert M (2016) DROPSA Deliverable 1.3 Report for Oranges and Mandarins – Fruit pathway and Alert List’. An Excel file containing supporting information is available at https://upload.eppo.int/download/112o3f5b0c014 DROPSA is funded by the European Union’s Seventh Framework Programme for research, technological development and demonstration (grant agreement no. 613678). www.dropsaproject.eu [email protected] DROPSA DELIVERABLE REPORT on ORANGES AND MANDARINS – Fruit pathway and Alert List 1. Introduction ............................................................................................................................................... 2 1.1 Background on oranges and mandarins ..................................................................................................... 2 1.2 Data on production and trade of orange and mandarin fruit ........................................................................ 5 1.3 Characteristics of the pathway ‘orange and mandarin fruit’ ....................................................................... -
Maternal Effects and Environmental Filtering Shape Seed Fungal
bioRxiv preprint doi: https://doi.org/10.1101/691121; this version posted July 3, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Maternal effects and environmental filtering shape seed fungal communities in oak trees Tania Fort1, Charlie Pauvert1, Amy E. Zanne2, Otso Ovaskainen3,4, Thomas Caignard1, Matthieu Barret5, Stéphane Compant6, Arndt Hampe1, Sylvain Delzon7 and Corinne Vacher1* 1. BIOGECO, INRA, Univ. Bordeaux, 33615 Pessac, France 2. George Washington University, Biological Sciences Department, 800 22nd St. , Washington DC 20052, USA 3. Organismal and Evolutionary Biology Research Programme, P.O. Box 65, 00014 University of Helsinki, Finland. 4. Center for Biodiversity Dynamics, Department of Biology, Norwegian University of Science and Technology, 7491 Trondheim, Norway 5. IRHS, Agrocampus-Ouest, INRA, Université d’Angers, SFR4207 QuaSaV, 49071 Beaucouzé, France. 6. AIT Austrian Institute of Technology GmbH, Center for Health & Bioresources, Bioresources Unit, Konrad-Lorenz Straße 24, 3430 Tulln, Austria 7. Univ. Bordeaux, INRA, BIOGECO, Pessac France. *Author for correspondence: Corinne Vacher Tel: +33(0)5 40 00 88 99 E-mail: [email protected] Address: UMR BIOGECO, Université de Bordeaux, Allée Geoffroy St-Hilaire, Bât. B2, 33615 Pessac, France bioRxiv preprint doi: https://doi.org/10.1101/691121; this version posted July 3, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. -
A Worldwide List of Endophytic Fungi with Notes on Ecology and Diversity
Mycosphere 10(1): 798–1079 (2019) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/10/1/19 A worldwide list of endophytic fungi with notes on ecology and diversity Rashmi M, Kushveer JS and Sarma VV* Fungal Biotechnology Lab, Department of Biotechnology, School of Life Sciences, Pondicherry University, Kalapet, Pondicherry 605014, Puducherry, India Rashmi M, Kushveer JS, Sarma VV 2019 – A worldwide list of endophytic fungi with notes on ecology and diversity. Mycosphere 10(1), 798–1079, Doi 10.5943/mycosphere/10/1/19 Abstract Endophytic fungi are symptomless internal inhabits of plant tissues. They are implicated in the production of antibiotic and other compounds of therapeutic importance. Ecologically they provide several benefits to plants, including protection from plant pathogens. There have been numerous studies on the biodiversity and ecology of endophytic fungi. Some taxa dominate and occur frequently when compared to others due to adaptations or capabilities to produce different primary and secondary metabolites. It is therefore of interest to examine different fungal species and major taxonomic groups to which these fungi belong for bioactive compound production. In the present paper a list of endophytes based on the available literature is reported. More than 800 genera have been reported worldwide. Dominant genera are Alternaria, Aspergillus, Colletotrichum, Fusarium, Penicillium, and Phoma. Most endophyte studies have been on angiosperms followed by gymnosperms. Among the different substrates, leaf endophytes have been studied and analyzed in more detail when compared to other parts. Most investigations are from Asian countries such as China, India, European countries such as Germany, Spain and the UK in addition to major contributions from Brazil and the USA. -
Fungal Endophytes in Ash Shoots – Diversity and Inhibition of Hymenoscyphus Fraxineus
= +DQDFNRYiHWDO%DOWLF)RUHVWU\YRO ,661 Fungal Endophytes in Ash Shoots – Diversity and Inhibition of Hymenoscyphus fraxineus 1,2 1 1 1 ZUZANA HAĕÁýKOVÁ *, LUDMILA HAVRDOVÁ , KAREL ýERNÝ , DANIEL ZAHRADNÍK AND 2 ONDěEJ KOUKOL 1Department of Biological Risks, Silva Tarouca Research Institute for Landscape and Ornamental Gardening Publ. Res. Inst., KvČtnové námČstí 391, PrĤhonice 252 43, Czech Republic 2Department of Botany, Faculty of Science, Charles University, Benátská 2, Prague 128 01, Czech Republic *Corresponding author: E-mail: [email protected], tel. +420 296528368 HaĖáþková, Z., Havrdová, L., ýerný, L., Zahradník, D. and Koukol, O. 2017. Fungal Endophytes in Ash Shoots ± Diversity and Inhibition of Hymenoscyphus fraxineus. Baltic Forestry 23(1): 89-106. Abstract The population of European ash (Fraxinus excelsior) in Europe is severely affected by ash dieback disease caused by Hymen- oscyphus fraxineus. Endophytic fungi are known to influence tree fitness and there are efforts to use them directly or indirectly in the biological control of tree pathogens. To assess possible variation in the fungal community depending on the health status of the tree, three pairs of ash dieback relatively resistant and ash dieback susceptible adult trees were selected from two locations. The diversity of fungal endophytes in healthy ash shoots was investigated in the summer and winter season by agar culture isolations. To screen for the antagonistic potential of ash endophytes to H. fraxineus, 48 isolated taxa were tested in dual cultures with the pathogen. Distinc- tive seasonal changes were observed in the identified fungal communities. Endophytes with a presumptive saprotrophic functional role increased in the summer, whereas presumptive pathogenic taxa increased in winter. -
Characterising Plant Pathogen Communities and Their Environmental Drivers at a National Scale
Lincoln University Digital Thesis Copyright Statement The digital copy of this thesis is protected by the Copyright Act 1994 (New Zealand). This thesis may be consulted by you, provided you comply with the provisions of the Act and the following conditions of use: you will use the copy only for the purposes of research or private study you will recognise the author's right to be identified as the author of the thesis and due acknowledgement will be made to the author where appropriate you will obtain the author's permission before publishing any material from the thesis. Characterising plant pathogen communities and their environmental drivers at a national scale A thesis submitted in partial fulfilment of the requirements for the Degree of Doctor of Philosophy at Lincoln University by Andreas Makiola Lincoln University, New Zealand 2019 General abstract Plant pathogens play a critical role for global food security, conservation of natural ecosystems and future resilience and sustainability of ecosystem services in general. Thus, it is crucial to understand the large-scale processes that shape plant pathogen communities. The recent drop in DNA sequencing costs offers, for the first time, the opportunity to study multiple plant pathogens simultaneously in their naturally occurring environment effectively at large scale. In this thesis, my aims were (1) to employ next-generation sequencing (NGS) based metabarcoding for the detection and identification of plant pathogens at the ecosystem scale in New Zealand, (2) to characterise plant pathogen communities, and (3) to determine the environmental drivers of these communities. First, I investigated the suitability of NGS for the detection, identification and quantification of plant pathogens using rust fungi as a model system. -
Ascomycota, Hypocreales, Nectriaceae) Na Slovensku Occurrence of Gibberella Zeae (Ascomycota, Hypocreales, Nectriaceae) in Slovakia
Bull. Slov. Bot. Spoločn., Bratislava, 27: 31 – 35, 2005 Výskyt druhu Gibberella zeae (Ascomycota, Hypocreales, Nectriaceae) na Slovensku Occurrence of Gibberella zeae (Ascomycota, Hypocreales, Nectriaceae) in Slovakia MARTIN PASTIRČÁK Výskumný ústav rastlinnej výroby, Oddelenie genetiky rezistencie, Bratislavská cesta 122, 921 68 Piešťany, [email protected] Abstract: The phytopathogenic fungus Gibberella zeae was found on dead plant material of maize and winter wheat in 2000 – 2004. Dimensions of perithecium, asci and ascospores were measured in vitro and compared with previous descriptions. Presented are also summarized data of genus Gibberella. Keywords: ascomycetes, Gibberella zeae, maize, winter wheat. Obilniny sú v našich podmienkach napadané širokým spektrom fytopatogénnych mikroskopických húb. Biológia týchto mikroskopických húb sa často študuje ako v podmienkach in situ, tak aj v podmienkach in vitro. V poslednej dobe sa aj na území Slovenska štúdium mykológie obilnín zameriava na sledovanie výskytu najmä húb rodu Fusarium. Na kukurici som zaznamenal najčastejší výskyt huby Fusarium graminearum Schwabe už predošlej práci (Pastirčák 2002). Táto huba v podmienkach in vitro a in situ tvorí pohlavné štádium Gibberella zeae (Schweinitz) Petch. Z územia Slo- venska túto hubu identifikoval na kukurici Drimal (1982). V tejto práci predkladám výsledky štúdia rozšírenia huby Gibberella zeae para- zitujúcej na vegetatívnych častiach kukurice a pšenice a celkové druhové zastú- penie rodu Gibberella dokladované z územia Slovenska. Týmto -
Microfungal Diversity of Juncus Trifidus L. and Salix Herbacea L. at Isolated Locations in the Sudetes and Carpathian Mountains
Title: Microfungal diversity of Juncus trifidus L. and Salix herbacea L. at isolated locations in the Sudetes and Carpathian Mountains Author: Bryan Jacewski, Jacek Urbaniak, Paweł Kwiatkowski, Wojciech Pusz Citation style: Jacewski Bryan, Urbaniak Jacek, Kwiatkowski Paweł, Pusz Wojciech. (2019). Microfungal diversity of Juncus trifidus L. and Salix herbacea L. at isolated locations in the Sudetes and Carpathian Mountains. "Acta Mycologica" (Vol. 54, no. 1 (2019), s. 1-15), doi 10.5586/am.1118. Acta Mycologica DOI: 10.5586/am.1118 ORIGINAL RESEARCH PAPER Publication history Received: 2018-04-27 Accepted: 2018-11-20 Microfungal diversity of Juncus trifdus L. Published: 2019-06-25 and Salix herbacea L. at isolated locations in Handling editor Malgorzata Ruszkiewicz- Michalska, Institute for the Sudetes and Carpathian Mountains Agricultural and Forest Environment, Polish Academy of Sciences and Faculty of Biology Brayan Jacewski1*, Jacek Urbaniak1, Paweł Kwiatkowski2, Wojciech and Environmental Protection, 3 University of Łódź, Poland Pusz 1 Department of Botany and Plant Ecology, Wrocław University of Environmental and Life Authors’ contributions Sciences, pl. Grunwaldzki 24A, 50-363 Wrocław, Poland BJ, JU: research codesigning, 2 Department of Botany and Nature Protection, University of Silesia in Katowice, Jagiellońska 28, conducting experiments, 40-032 Katowice, Poland writing the manuscript; PK: 3 Department of Plant Protection, Wrocław University of Environmental and Life Sciences, pl. contributed to the collection of Grunwaldzki 24A, 50-363 Wrocław, Poland plant material; WP: contributed to the species determination * Corresponding author. Email: [email protected] Funding This work was founded by Abstract the Wrocław University of Environmental and Life Sciences During cold periods in the Pleistocene Epoch, many plants known as the “relict as part of individual research species” migrated and inhabited new areas. -
Monograph on the Genus Fusarium
Monograph On The Genus Fusarium By Mohamed Refai1 2 1 Atef Hassan and Mai Hamed 1. Department of Microbiology, Faculty of Veterinary Medicine, Cairo University, Giza, Egypt 2. Department of Mycology and Mycotoxins, Animal Health Research Institute, Agriculture Research Center, Dokki, Giza 2015 1 Preface This Monograph is dedicated to the eminent pathologist Prof. Abdul-Rahman Khater, who was the first to direct my attention in 1966 that the nervous manifestations of donkeys were most probably caused by intoxication, rather than virus infection as propagated at that time. It is also dedicated to Prof. Nabil Hassan, the first veterinarian who studied Fusarium during his PhD mission in Moscow in the late sixty and who gave an excellent talk on fusraiotoxicosis at the International mycotoxicosis conference held in Nairobi, 1978, where I was working as FAO Consultant. Prof. Khater Prof. Nabil in Nairobi Mai Hamed This and other monographs I have uploaded before are intended to be sources for information for the students without any restriction, particularly for those in the developing countries, who are not able to buy expensive books or subscribe in journals or pay to read an article, because of shortage of the hard currency. When I started planning this monograph on the genus Fusarium, I have not imagined that I will find such enormous amounts of data on a single organism, so that I feel now after ending the monograph that I have actually written a synopsis as a guide to the postgraduate students to have an idea about the past history of the genus Fusarium, which was mainly concerned with its discovery and nomenclature , and the recent history of the main discoveries, which are concerned mainly with the molecular characteristics of the organism. -
Mexico Ware Potato RA.Docx
Importation, from Mexico into the United States, of Potato, Solanum tuberosum, Tubers Intended for Consumption A Pathway-initiated Commodity Risk Assessment April 2011 Agency contact: Plant Epidemiology and Risk Analysis Laboratory Center for Plant Health Science and Technology United States Department of Agriculture Animal and Plant Health Inspection Service Plant Protection and Quarantine 1730 Varsity Drive, Suite 300 Raleigh, North Carolina 27606 Pest Risk Assessment for Ware Potato, Solanum tuberosum, from Mexico Executive Summary In this document we present results of an assessment of the risks associated with the importation, from Mexico into the United States (the 50 states and Caribbean territories), of ware potatoes (i.e., potatoes for consumption only), Solanum tuberosum L. A search of available sources of information and APHIS, PPQ port interception records identified eight quarantine pests of S. tuberosum that occur in Mexico and could be introduced into the United States in consignments of that commodity. Consequences of Introduction were estimated by assessing five elements that reflect the biology and ecology of the pests: climate/host interaction, host range, dispersal potential, economic impact, and environmental impact, resulting in the calculation of a risk value. Likelihood of Introduction was estimated by considering both the quantity of the commodity to be imported annually and the potential for pest introduction, resulting in the calculation of a second risk value. The two values were summed to estimate an overall Pest Risk Potential, which is an estimation of risk in the absence of mitigation. Quarantine pests considered likely to follow the import pathway are presented in the following table, indicating their risk ratings.