Microfungal Diversity of Juncus Trifidus L. and Salix Herbacea L. at Isolated Locations in the Sudetes and Carpathian Mountains
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Microbial Community of Olives and Its Potential for Biological Control of Olive Anthracnose
Microbial community of olives and its potential for biological control of olive anthracnose Gilda Conceição Raposo Preto Dissertation presented to the Agricultural School for obtaining a Master's degree in Biotechnological Engineering Supervised by Prof. Dr. Paula Cristina dos Santos Baptista Prof. Dr. José Alberto Pereira Bragança 2016 “The little I know I owe to my ignorance” Orville Mars II Acknowledgment First I would like to thank my supervisor, Professor Dr. Paula Baptista., for your willingness, patience, being a tireless person who always helped me in the best way. Thank you for always required the best of me, and thank you for all your advice and words that helped me in less good times. I will always be grateful. I would like to thank my co-supervisor, Professor Dr. José Alberto Pereira, to be always available for any questions, and all the available help. A very special thank you to Cynthia, for being always there to cheer me up, for all the help and all the advice that I will take with me forever. A big thank you to Gisela, Fátima, Teresa, Nuno, Diogo and Ricardo, because they are simply the best people he could have worked for all the advice, tips and words friends you have given me, thank you. I couldn’t fail to thank those who have always been present in the best and worst moments since the beginning, Diogo, Rui, Cláudia, Sara and Rui. You always believed in me and always gave me on the head when needed, thank you. To Vitor, for never given up and have always been present in the worst moments, for your patience, help and dedication, and because you know always how to cheer me up and make smille. -
Identification and Nomenclature of the Genus Penicillium
Downloaded from orbit.dtu.dk on: Dec 20, 2017 Identification and nomenclature of the genus Penicillium Visagie, C.M.; Houbraken, J.; Frisvad, Jens Christian; Hong, S. B.; Klaassen, C.H.W.; Perrone, G.; Seifert, K.A.; Varga, J.; Yaguchi, T.; Samson, R.A. Published in: Studies in Mycology Link to article, DOI: 10.1016/j.simyco.2014.09.001 Publication date: 2014 Document Version Publisher's PDF, also known as Version of record Link back to DTU Orbit Citation (APA): Visagie, C. M., Houbraken, J., Frisvad, J. C., Hong, S. B., Klaassen, C. H. W., Perrone, G., ... Samson, R. A. (2014). Identification and nomenclature of the genus Penicillium. Studies in Mycology, 78, 343-371. DOI: 10.1016/j.simyco.2014.09.001 General rights Copyright and moral rights for the publications made accessible in the public portal are retained by the authors and/or other copyright owners and it is a condition of accessing publications that users recognise and abide by the legal requirements associated with these rights. • Users may download and print one copy of any publication from the public portal for the purpose of private study or research. • You may not further distribute the material or use it for any profit-making activity or commercial gain • You may freely distribute the URL identifying the publication in the public portal If you believe that this document breaches copyright please contact us providing details, and we will remove access to the work immediately and investigate your claim. available online at www.studiesinmycology.org STUDIES IN MYCOLOGY 78: 343–371. Identification and nomenclature of the genus Penicillium C.M. -
Identification and Nomenclature of the Genus Penicillium
available online at www.studiesinmycology.org STUDIES IN MYCOLOGY 78: 343–371. Identification and nomenclature of the genus Penicillium C.M. Visagie1, J. Houbraken1*, J.C. Frisvad2*, S.-B. Hong3, C.H.W. Klaassen4, G. Perrone5, K.A. Seifert6, J. Varga7, T. Yaguchi8, and R.A. Samson1 1CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, NL-3584 CT Utrecht, The Netherlands; 2Department of Systems Biology, Building 221, Technical University of Denmark, DK-2800 Kgs. Lyngby, Denmark; 3Korean Agricultural Culture Collection, National Academy of Agricultural Science, RDA, Suwon, Korea; 4Medical Microbiology & Infectious Diseases, C70 Canisius Wilhelmina Hospital, 532 SZ Nijmegen, The Netherlands; 5Institute of Sciences of Food Production, National Research Council, Via Amendola 122/O, 70126 Bari, Italy; 6Biodiversity (Mycology), Agriculture and Agri-Food Canada, Ottawa, ON K1A0C6, Canada; 7Department of Microbiology, Faculty of Science and Informatics, University of Szeged, H-6726 Szeged, Közep fasor 52, Hungary; 8Medical Mycology Research Center, Chiba University, 1-8-1 Inohana, Chuo-ku, Chiba 260-8673, Japan *Correspondence: J. Houbraken, [email protected]; J.C. Frisvad, [email protected] Abstract: Penicillium is a diverse genus occurring worldwide and its species play important roles as decomposers of organic materials and cause destructive rots in the food industry where they produce a wide range of mycotoxins. Other species are considered enzyme factories or are common indoor air allergens. Although DNA sequences are essential for robust identification of Penicillium species, there is currently no comprehensive, verified reference database for the genus. To coincide with the move to one fungus one name in the International Code of Nomenclature for algae, fungi and plants, the generic concept of Penicillium was re-defined to accommodate species from other genera, such as Chromocleista, Eladia, Eupenicillium, Torulomyces and Thysanophora, which together comprise a large monophyletic clade. -
Fundamentals for Taxonomic Studies of Fusarium1
FUNDAMENTALS FOR TAXONOMIC STUDIES OF FUSARIUM1 By H. W. WOLLEN WEBER,2 Pathologist, Biologische Reichsanstalt für Land- und Forstwirtschaft; C. D. SHERBAKOFF,3 Pathologist, Agricultural Experiment Station, University of Tennessee; and O. A. REINKING, Pathologist, United Fruit Company; with the cooperation of HELEN JOHANN, Assistant Pathologist, Office of Cereal Investigations, Bureau of Plant Industry, and ALICE A. BAILEY, Junior Pathologist, Office of Cotton, Truck, and Forage Crop Disease Investiga- tions, Bureau of Plant Industry, United States Department of Agriculture 4 INTRODUCTION volved the United Fruit Co.'s bringing Dr. H. W. Wollenweber over from Ger- There has been a long-felt need for many, and Dr. O. A. Reinking from a general conference of all workers on Central America. The United States the Fusarium problem in order that a workers included Dr. C. D. Sherbakoff, uniform taxonomy may be formulated of the University of Tennessee, Miss upon which future work can be based. Helen Johann and Mrs. Alice A. Bailey, The various workers have always been representing, respectively, the Offices fundamentally in reasonably close of Cereal Investigations, of Cotton, agreement regarding the principles of Truck, and Forage Crop Disease In- Fusarium classification, but there has vestigations, and of Pathological col- been a number of points which were lections of the United States Depart- not clearly understood, possibly because ment of Agriculture, in a joint study of the investigators have not been suffi- Fusarium classification. The United ciently in contact with each other. Fruit Co., through its director of agri- Variations in the methods employed in cultural research, Dr. John R. -
Functions, Transmission and Emission of the Canopy Microbiota Tania Fort
Functions, transmission and emission of the canopy microbiota Tania Fort To cite this version: Tania Fort. Functions, transmission and emission of the canopy microbiota. Vegetal Biology. Univer- sité de Bordeaux, 2019. English. NNT : 2019BORD0338. tel-02869590 HAL Id: tel-02869590 https://tel.archives-ouvertes.fr/tel-02869590 Submitted on 16 Jun 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. THÈSE PRESENTÉE POUR OBTENIR LE GRADE DE DOCTEUR DE L’UNIVERSITE DE BORDEAUX ECOLE DOCTORALE SCIENCES ET ENVIRONNEMENTS ECOLOGIE ÉVOLUTIVE, FONCTIONNELLE, ET DES COMMUNAUTÉS Par Tania Fort Fonctions, transmission et émission du microbiote de la canopée Sous la direction de Corinne Vacher Soutenue le 10 décembre 2019 Membres du jury : Mme. Anne-Marie DELORT Directrice de recherche Institut de Chimie de Clermont-Ferrand Rapporteuse M. Stéphane Uroz Directeur de recherche INRA Nancy Rapporteur Mme. Patricia Luis Maître de conférence Université de Lyon 1 Rapporteuse Mme. Annabel Porté Directrice de recherche INRA Bordeaux Présidente Mme. Corinne Vacher Directrice de recherche INRA Bordeaux Directrice Fonctions, transmission et émission du microbiote de la canopée. Les arbres interagissent avec des communautés microbiennes diversifiées qui influencent leur fitness et le fonctionnement des écosystèmes terrestres. -
REPORT on APPLES – Fruit Pathway and Alert List
EU project number 613678 Strategies to develop effective, innovative and practical approaches to protect major European fruit crops from pests and pathogens Work package 1. Pathways of introduction of fruit pests and pathogens Deliverable 1.3. PART 5 - REPORT on APPLES – Fruit pathway and Alert List Partners involved: EPPO (Grousset F, Petter F, Suffert M) and JKI (Steffen K, Wilstermann A, Schrader G). This document should be cited as ‘Wistermann A, Steffen K, Grousset F, Petter F, Schrader G, Suffert M (2016) DROPSA Deliverable 1.3 Report for Apples – Fruit pathway and Alert List’. An Excel file containing supporting information is available at https://upload.eppo.int/download/107o25ccc1b2c DROPSA is funded by the European Union’s Seventh Framework Programme for research, technological development and demonstration (grant agreement no. 613678). www.dropsaproject.eu [email protected] DROPSA DELIVERABLE REPORT on Apples – Fruit pathway and Alert List 1. Introduction ................................................................................................................................................... 3 1.1 Background on apple .................................................................................................................................... 3 1.2 Data on production and trade of apple fruit ................................................................................................... 3 1.3 Pathway ‘apple fruit’ ..................................................................................................................................... -
207-219 44(4) 01.홍승범R.Fm
한국균학회지 The Korean Journal of Mycology Review 일균일명 체계에 의한 국내 보고 Aspergillus, Penicillium, Talaromyces 속의 종 목록 정리 김현정 1† · 김정선 1† · 천규호 1 · 김대호 2 · 석순자 1 · 홍승범 1* 1국립농업과학원 농업미생물과 미생물은행(KACC), 2강원대학교 산림환경과학대학 산림환경보호학과 Species List of Aspergillus, Penicillium and Talaromyces in Korea, Based on ‘One Fungus One Name’ System 1† 1† 1 2 1 1 Hyeon-Jeong Kim , Jeong-Seon Kim , Kyu-Ho Cheon , Dae-Ho Kim , Soon-Ja Seok and Seung-Beom Hong * 1 Korean Agricultural Culture Collection, Agricultural Microbiology Division National Institute of Agricultural Science, Wanju 55365, Korea 2 Tree Pathology and Mycology Laboratory, Department of Forestry and Environmental Systems, Kangwon National University, Chun- cheon 24341, Korea ABSTRACT : Aspergillus, Penicillium, and their teleomorphic genera have a worldwide distribution and large economic impacts on human life. The names of species in the genera that have been reported in Korea are listed in this study. Fourteen species of Aspergillus, 4 of Eurotium, 8 of Neosartorya, 47 of Penicillium, and 5 of Talaromyces were included in the National List of Species of Korea, Ascomycota in 2015. Based on the taxonomic system of single name nomenclature on ICN (International Code of Nomenclature for algae, fungi, and plants), Aspergillus and its teleomorphic genera such as Neosartorya, Eurotium, and Emericella were named as Aspergillus and Penicillium, and its teleomorphic genera such as Eupenicillium and Talaromyces were named as Penicillium (subgenera Aspergilloides, Furcatum, and Penicillium) and Talaromyces (subgenus Biverticillium) in this study. In total, 77 species were added and the revised list contains 55 spp. of Aspergillus, 82 of Penicillium, and 18 of Talaromyces. -
EU Project Number 613678
EU project number 613678 Strategies to develop effective, innovative and practical approaches to protect major European fruit crops from pests and pathogens Work package 1. Pathways of introduction of fruit pests and pathogens Deliverable 1.3. PART 7 - REPORT on Oranges and Mandarins – Fruit pathway and Alert List Partners involved: EPPO (Grousset F, Petter F, Suffert M) and JKI (Steffen K, Wilstermann A, Schrader G). This document should be cited as ‘Grousset F, Wistermann A, Steffen K, Petter F, Schrader G, Suffert M (2016) DROPSA Deliverable 1.3 Report for Oranges and Mandarins – Fruit pathway and Alert List’. An Excel file containing supporting information is available at https://upload.eppo.int/download/112o3f5b0c014 DROPSA is funded by the European Union’s Seventh Framework Programme for research, technological development and demonstration (grant agreement no. 613678). www.dropsaproject.eu [email protected] DROPSA DELIVERABLE REPORT on ORANGES AND MANDARINS – Fruit pathway and Alert List 1. Introduction ............................................................................................................................................... 2 1.1 Background on oranges and mandarins ..................................................................................................... 2 1.2 Data on production and trade of orange and mandarin fruit ........................................................................ 5 1.3 Characteristics of the pathway ‘orange and mandarin fruit’ ....................................................................... -
Maternal Effects and Environmental Filtering Shape Seed Fungal
bioRxiv preprint doi: https://doi.org/10.1101/691121; this version posted July 3, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Maternal effects and environmental filtering shape seed fungal communities in oak trees Tania Fort1, Charlie Pauvert1, Amy E. Zanne2, Otso Ovaskainen3,4, Thomas Caignard1, Matthieu Barret5, Stéphane Compant6, Arndt Hampe1, Sylvain Delzon7 and Corinne Vacher1* 1. BIOGECO, INRA, Univ. Bordeaux, 33615 Pessac, France 2. George Washington University, Biological Sciences Department, 800 22nd St. , Washington DC 20052, USA 3. Organismal and Evolutionary Biology Research Programme, P.O. Box 65, 00014 University of Helsinki, Finland. 4. Center for Biodiversity Dynamics, Department of Biology, Norwegian University of Science and Technology, 7491 Trondheim, Norway 5. IRHS, Agrocampus-Ouest, INRA, Université d’Angers, SFR4207 QuaSaV, 49071 Beaucouzé, France. 6. AIT Austrian Institute of Technology GmbH, Center for Health & Bioresources, Bioresources Unit, Konrad-Lorenz Straße 24, 3430 Tulln, Austria 7. Univ. Bordeaux, INRA, BIOGECO, Pessac France. *Author for correspondence: Corinne Vacher Tel: +33(0)5 40 00 88 99 E-mail: [email protected] Address: UMR BIOGECO, Université de Bordeaux, Allée Geoffroy St-Hilaire, Bât. B2, 33615 Pessac, France bioRxiv preprint doi: https://doi.org/10.1101/691121; this version posted July 3, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. -
A Worldwide List of Endophytic Fungi with Notes on Ecology and Diversity
Mycosphere 10(1): 798–1079 (2019) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/10/1/19 A worldwide list of endophytic fungi with notes on ecology and diversity Rashmi M, Kushveer JS and Sarma VV* Fungal Biotechnology Lab, Department of Biotechnology, School of Life Sciences, Pondicherry University, Kalapet, Pondicherry 605014, Puducherry, India Rashmi M, Kushveer JS, Sarma VV 2019 – A worldwide list of endophytic fungi with notes on ecology and diversity. Mycosphere 10(1), 798–1079, Doi 10.5943/mycosphere/10/1/19 Abstract Endophytic fungi are symptomless internal inhabits of plant tissues. They are implicated in the production of antibiotic and other compounds of therapeutic importance. Ecologically they provide several benefits to plants, including protection from plant pathogens. There have been numerous studies on the biodiversity and ecology of endophytic fungi. Some taxa dominate and occur frequently when compared to others due to adaptations or capabilities to produce different primary and secondary metabolites. It is therefore of interest to examine different fungal species and major taxonomic groups to which these fungi belong for bioactive compound production. In the present paper a list of endophytes based on the available literature is reported. More than 800 genera have been reported worldwide. Dominant genera are Alternaria, Aspergillus, Colletotrichum, Fusarium, Penicillium, and Phoma. Most endophyte studies have been on angiosperms followed by gymnosperms. Among the different substrates, leaf endophytes have been studied and analyzed in more detail when compared to other parts. Most investigations are from Asian countries such as China, India, European countries such as Germany, Spain and the UK in addition to major contributions from Brazil and the USA. -
Fungal Endophytes in Ash Shoots – Diversity and Inhibition of Hymenoscyphus Fraxineus
= +DQDFNRYiHWDO%DOWLF)RUHVWU\YRO ,661 Fungal Endophytes in Ash Shoots – Diversity and Inhibition of Hymenoscyphus fraxineus 1,2 1 1 1 ZUZANA HAĕÁýKOVÁ *, LUDMILA HAVRDOVÁ , KAREL ýERNÝ , DANIEL ZAHRADNÍK AND 2 ONDěEJ KOUKOL 1Department of Biological Risks, Silva Tarouca Research Institute for Landscape and Ornamental Gardening Publ. Res. Inst., KvČtnové námČstí 391, PrĤhonice 252 43, Czech Republic 2Department of Botany, Faculty of Science, Charles University, Benátská 2, Prague 128 01, Czech Republic *Corresponding author: E-mail: [email protected], tel. +420 296528368 HaĖáþková, Z., Havrdová, L., ýerný, L., Zahradník, D. and Koukol, O. 2017. Fungal Endophytes in Ash Shoots ± Diversity and Inhibition of Hymenoscyphus fraxineus. Baltic Forestry 23(1): 89-106. Abstract The population of European ash (Fraxinus excelsior) in Europe is severely affected by ash dieback disease caused by Hymen- oscyphus fraxineus. Endophytic fungi are known to influence tree fitness and there are efforts to use them directly or indirectly in the biological control of tree pathogens. To assess possible variation in the fungal community depending on the health status of the tree, three pairs of ash dieback relatively resistant and ash dieback susceptible adult trees were selected from two locations. The diversity of fungal endophytes in healthy ash shoots was investigated in the summer and winter season by agar culture isolations. To screen for the antagonistic potential of ash endophytes to H. fraxineus, 48 isolated taxa were tested in dual cultures with the pathogen. Distinc- tive seasonal changes were observed in the identified fungal communities. Endophytes with a presumptive saprotrophic functional role increased in the summer, whereas presumptive pathogenic taxa increased in winter. -
Phylogeny of Penicillium and the Segregation of Trichocomaceae Into Three Families
available online at www.studiesinmycology.org StudieS in Mycology 70: 1–51. 2011. doi:10.3114/sim.2011.70.01 Phylogeny of Penicillium and the segregation of Trichocomaceae into three families J. Houbraken1,2 and R.A. Samson1 1CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands; 2Microbiology, Department of Biology, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands. *Correspondence: Jos Houbraken, [email protected] Abstract: Species of Trichocomaceae occur commonly and are important to both industry and medicine. They are associated with food spoilage and mycotoxin production and can occur in the indoor environment, causing health hazards by the formation of β-glucans, mycotoxins and surface proteins. Some species are opportunistic pathogens, while others are exploited in biotechnology for the production of enzymes, antibiotics and other products. Penicillium belongs phylogenetically to Trichocomaceae and more than 250 species are currently accepted in this genus. In this study, we investigated the relationship of Penicillium to other genera of Trichocomaceae and studied in detail the phylogeny of the genus itself. In order to study these relationships, partial RPB1, RPB2 (RNA polymerase II genes), Tsr1 (putative ribosome biogenesis protein) and Cct8 (putative chaperonin complex component TCP-1) gene sequences were obtained. The Trichocomaceae are divided in three separate families: Aspergillaceae, Thermoascaceae and Trichocomaceae. The Aspergillaceae are characterised by the formation flask-shaped or cylindrical phialides, asci produced inside cleistothecia or surrounded by Hülle cells and mainly ascospores with a furrow or slit, while the Trichocomaceae are defined by the formation of lanceolate phialides, asci borne within a tuft or layer of loose hyphae and ascospores lacking a slit.