Unsustainable Food Systems Threaten Wild Crop and Dolphin Species
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Evolutionary History of the Porpoises
bioRxiv preprint doi: https://doi.org/10.1101/851469; this version posted November 22, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Evolutionary history of the porpoises (Phocoenidae) across the 2 speciation continuum: a mitogenome phylogeographic perspective 3 4 Yacine Ben Chehida1, Julie Thumloup1, Cassie Schumacher2, Timothy Harkins2, Alex 5 Aguilar3, Asunción Borrell3, Marisa Ferreira4, Lorenzo Rojas-Bracho5, Kelly M. Roberston6, 6 Barbara L. Taylor6, Gísli A. Víkingsson7, Arthur Weyna8, Jonathan Romiguier8, Phillip A. 7 Morin6, Michael C. Fontaine1,9* 8 9 1 Groningen Institute for Evolutionary Life Sciences (GELIFES), University of Groningen, PO Box 11103 CC, 10 Groningen, The Netherlands 11 2 Swift Biosciences, 674 S. Wagner Rd., Suite 100, Ann Arbor, MI 48103, USA 12 3 IRBIO and Department of Evolutive Biology, Ecology and Environmental Sciences, Faculty of Biology, 13 University of Barcelona, Diagonal 643, 08071 Barcelona, Spain 14 4 MATB-Sociedade Portuguesa de Vida Selvagem, Estação de Campo de Quiaios, Apartado EC Quiaios, 3080- 15 530 Figueira da Foz, Portugal & CPRAM-Ecomare, Estrada do Porto de Pesca Costeira, 3830-565 Gafanha da 16 Nazaré, Portugal 17 5 Instituto Nacional de Ecología, Centro de Investigación Científica y de Educación Superior de Ensenada, 18 Carretera Ensenada-Tijuana 3918, Fraccionamiento Zona Playitas, Ensenada, BC 22860, Mexico 19 6 Southwest Fisheries Science Center, National Marine Fisheries Service, NOAA, 8901 La Jolla Shores Dr., La 20 Jolla, California 92037, USA 21 7 Marine and Freshwater Research Institute, PO Box 1390, 121 Reykjavik, Iceland 22 8 Institut des Sciences de l’Évolution (Université de Montpellier, CNRS UMR 5554), Montpellier, France 23 9 Laboratoire MIVEGEC (Université de Montpellier, UMR CNRS 5290, IRD 229), Centre IRD de Montpellier, 24 Montpellier, France 25 26 *Corresponding author: Michael C. -
ONEP V09.Pdf
Compiled by Jarujin Nabhitabhata Tanya Chan-ard Yodchaiy Chuaynkern OEPP BIODIVERSITY SERIES volume nine OFFICE OF ENVIRONMENTAL POLICY AND PLANNING MINISTRY OF SCIENCE TECHNOLOGY AND ENVIRONMENT 60/1 SOI PIBULWATTANA VII, RAMA VI RD., BANGKOK 10400 THAILAND TEL. (662) 2797180, 2714232, 2797186-9 FAX. (662) 2713226 Office of Environmental Policy and Planning 2000 NOT FOR SALE NOT FOR SALE NOT FOR SALE Compiled by Jarujin Nabhitabhata Tanya Chan-ard Yodchaiy Chuaynkern Office of Environmental Policy and Planning 2000 First published : September 2000 by Office of Environmental Policy and Planning (OEPP), Thailand. ISBN : 974–87704–3–5 This publication is financially supported by OEPP and may be reproduced in whole or in part and in any form for educational or non–profit purposes without special permission from OEPP, providing that acknowledgment of the source is made. No use of this publication may be made for resale or for any other commercial purposes. Citation : Nabhitabhata J., Chan ard T., Chuaynkern Y. 2000. Checklist of Amphibians and Reptiles in Thailand. Office of Environmental Policy and Planning, Bangkok, Thailand. Authors : Jarujin Nabhitabhata Tanya Chan–ard Yodchaiy Chuaynkern National Science Museum Available from : Biological Resources Section Natural Resources and Environmental Management Division Office of Environmental Policy and Planning Ministry of Science Technology and Environment 60/1 Rama VI Rd. Bangkok 10400 THAILAND Tel. (662) 271–3251, 279–7180, 271–4232–8 279–7186–9 ext 226, 227 Facsimile (662) 279–8088, 271–3251 Designed & Printed :Integrated Promotion Technology Co., Ltd. Tel. (662) 585–2076, 586–0837, 913–7761–2 Facsimile (662) 913–7763 2 1. -
The Contribution of Policy, Law, Management, Research, and Advocacy Failings to the Recent Extinctions of Three Australian Vertebrate Species
This is the peer reviewed version of the following article: Woinarski, J. C. Z., Garnett, S. T., Legge, S. M., & Lindenmayer, D. B. (2017). The contribution of policy, law, management, research, and advocacy failings to the recent extinctions of three Australian vertebrate species. Conservation Biology, 31(1), 13-23; which has been published in final form at http://doi.org/10.1111/cobi.12852 This article may be used for non-commercial purposes in accordance with Wiley Terms and Conditions for Self-Archiving. The contribution of policy, law, management, research, and advocacy failings to the recent extinctions of three Australian vertebrate species John C.Z. Woinarski,*,a Stephen T. Garnett,* Sarah M. Legge,* † David B. Lindenmayer ‡ * Threatened Species Recovery Hub of the National Environment Science Programme, Research Institute for the Environment and Livelihoods, Charles Darwin University, Darwin, Northern Territory 0909, Australia, † Threatened Species Recovery Hub of the National Environment Science Programme, University of Queensland, St Lucia, Queensland 4072, Australia ‡ Threatened Species Recovery Hub of the National Environment Science Programme, Fenner School of Environment and Society, The Australian National University, Canberra, ACT 2601, Australia aemail [email protected] Keywords: Bramble Cay melomys, Christmas Island forest skink, Christmas Island pipistrelle, conservation policy, inquest, legislation, threatened species Running head: Extinction contributing factors Abstract Extinctions typically have ecological drivers, such as habitat loss. However, extinction events are also influenced by policy and management settings that may be antithetical to biodiversity conservation, inadequate to prevent extinction, insufficiently resourced, or poorly implemented. Three endemic Australian vertebrate species – the Christmas Island pipistrelle (Pipistrellus murrayi), Bramble Cay melomys (Melomys rubicola), and Christmas Island forest skink (Emoia nativitatis) – became extinct from 2009 to 2014. -
A New Record of the Christmas Island Blind Snake, Ramphotyphlops Exocoeti (Reptilia: Squamata: Typhlopidae)
RECORDS OF THE WESTERN AUSTRALIAN MUSEUM 27 156–160 (2012) A new record of the Christmas Island Blind Snake, Ramphotyphlops exocoeti (Reptilia: Squamata: Typhlopidae). Dion J. Maple1, Rachel Barr, Michael J. Smith 1 Christmas Island National Park, Christmas Island, Western Australia, Indian Ocean, 6798, Email: [email protected] ABSTRACT – The endemic Christmas Island Blind Snake Ramphotyphlops exocoeti is a species rarely collected since initial faunal collections were conducted on Christmas Island in 1887. Twenty-three years after the last record in 1986, an individual was collected on 31 July 2009. Here we catalogue historical collection records of this animal. We also describe the habitat and conditions in which the recent collection occurred and provide a brief morphological description of the animal including a diagnostic feature that may assist in future identifi cations. This account provides the fi rst accurate spatial record and detailed description of habitat utilised by this species. KEYWORDS: Indian Ocean, Yellow Crazy Ant, recovery plan INTRODUCTION ‘fairly common’ and could be found under the trunks Christmas Island is located in the Indian Ocean of fallen trees. In 1975 a specimen collected from (10°25'S, 105°40'E), approximately 360 km south of the Stewart Hill, located in the central west of the island western head of Java, Indonesia (Geoscience Australia in a mine lease known as Field 22, was deposited in 2011). This geographically remote, rugged and thickly the Australian Museum (Cogger and Sadlier 1981). A vegetated island is the exposed summit of a large specimen was caught by N. Dunlop in 1984 while pit mountain. -
Beluga Whale Pvhl Enhances HIF-2A Activity Via Inducing
www.impactjournals.com/oncotarget/ Oncotarget, 2017, Vol. 8, (No. 26), pp: 42272-42287 Research Paper Beluga whale pVHL enhances HIF-2α activity via inducing HIF- 2α proteasomal degradation under hypoxia Jianling Bi1, Bo Hu1, Jing Wang1, Xing Liu1, Jinsong Zheng1, Ding Wang1 and Wuhan Xiao1,2 1The Key Laboratory of Aquatic Biodiversity and Conservation, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, 430072, P. R. China 2State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, 430072, P. R. China Correspondence to: Wuhan Xiao, email: [email protected] Ding Wang, email: [email protected] Keywords: beluga whale, cetaceans, hypoxia, HIF-2α, VHL Received: October 09, 2016 Accepted: January 09, 2017 Published: February 02, 2017 Copyright: Bi et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License 3.0 (CC BY 3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. ABSTRACT Aquatic mammals, such as cetaceans experience various depths, with accordingly diverse oxygenation, thus, cetaceans have developed adaptations for hypoxia, but mechanisms underlying this tolerance to low oxygen are unclear. Here we analyzed VHL and HIF-2α, in the hypoxia signaling pathway. Variations in VHL are greater than HIF-2α between cetaceans and terrestrial mammals, and beluga whale VHL (BW-VHL) promotes HIF-2α degradation under hypoxia. BW-VHL catalyzes BW-HIF-2α to form K48-linked poly- ubiquitin chains mainly at the lysine 429 of BW-HIF-2α (K429) and induces BW-HIF-2α for proteasomal degradation. -
Conservation Status and the Use of Irrawaddy Dolphins As a Flagship
Conservation status and the use of Irrawaddy dolphins as a flagship species for climate adaptation in the Peam Krasop Wildlife Sanctuary, Cambodia Building Resilience to Climate Change Impacts in Coastal Southeast Asia (BCR) Brian Smith, Sun Kong and Lieng Saroeun INTERNATIONAL UNION FOR CONSERVATION OF NATURE The designation of geographical entities in this Citation: Smith, B., Kong, S., and Saroeun, L. book, and the presentation of the material, do not (2014). Conservation status and the use of imply the expression of any opinion whatsoever on Irrawaddy dolphins as a flagship species for climate adaptation in the Peam Krasop Wildlife the part of IUCN or the European Union concerning Sanctuary, Cambodia. Thailand: IUCN. 80pp. the legal status of any country, territory, or area, or of its authorities, or concerning the delimitation of its Cover photo: Dolphins in Koh Kong Province, frontiers or boundaries. The views expressed in this Cambodia © IUCN Cambodia/Sun Kong publication do not necessarily reflect those of IUCN, the European Union or any other participating Layout by: Ria Sen organizations. Produced by: IUCN Southeast Asia Group This publication has been made possible by funding from the European Union. Available from: IUCN Asia Regional Office Published by: IUCN Asia in Bangkok, Thailand 63 Soi Prompong, Sukhumvit 39, Wattana 10110 Bangkok, Thailand Copyright: © 2014 IUCN, International Union for Tel: +66 2 662 4029 Conservation of Nature and Natural Resources IUCN Cambodia Reproduction of this publication for educational or #6B, St. 368, Boeng Keng Kang III, other non-commercial purposes is authorized Chamkarmon, PO Box 1504, Phnom Penh, without prior written permission from the copyright Cambodia holder provided the source is fully acknowledgeRia d. -
Endemic Species of Christmas Island, Indian Ocean D.J
RECORDS OF THE WESTERN AUSTRALIAN MUSEUM 34 055–114 (2019) DOI: 10.18195/issn.0312-3162.34(2).2019.055-114 Endemic species of Christmas Island, Indian Ocean D.J. James1, P.T. Green2, W.F. Humphreys3,4 and J.C.Z. Woinarski5 1 73 Pozieres Ave, Milperra, New South Wales 2214, Australia. 2 Department of Ecology, Environment and Evolution, La Trobe University, Melbourne, Victoria 3083, Australia. 3 Western Australian Museum, Locked Bag 49, Welshpool DC, Western Australia 6986, Australia. 4 School of Biological Sciences, The University of Western Australia, 35 Stirling Highway, Crawley, Western Australia 6009, Australia. 5 NESP Threatened Species Recovery Hub, Charles Darwin University, Casuarina, Northern Territory 0909, Australia, Corresponding author: [email protected] ABSTRACT – Many oceanic islands have high levels of endemism, but also high rates of extinction, such that island species constitute a markedly disproportionate share of the world’s extinctions. One important foundation for the conservation of biodiversity on islands is an inventory of endemic species. In the absence of a comprehensive inventory, conservation effort often defaults to a focus on the better-known and more conspicuous species (typically mammals and birds). Although this component of island biota often needs such conservation attention, such focus may mean that less conspicuous endemic species (especially invertebrates) are neglected and suffer high rates of loss. In this paper, we review the available literature and online resources to compile a list of endemic species that is as comprehensive as possible for the 137 km2 oceanic Christmas Island, an Australian territory in the north-eastern Indian Ocean. -
Range Extensions of Lycodon Capucinus BOIE, 1827 in Eastern
ZOBODAT - www.zobodat.at Zoologisch-Botanische Datenbank/Zoological-Botanical Database Digitale Literatur/Digital Literature Zeitschrift/Journal: Herpetozoa Jahr/Year: 2004 Band/Volume: 17_3_4 Autor(en)/Author(s): Kuch Ulrich, McGuire Jimmy A. Artikel/Article: Range Extensions of Lycodon capucinus BOIE, 1827 in eastern Indonesia 191-193 ©Österreichische Gesellschaft für Herpetologie e.V., Wien, Austria, download unter www.biologiezentrum.at SHORT NOTE HERPETOZOA 17 (3/4) Wien, 30. Dezember 2004 SHORT NOTE 191 Wiebeisheim (Aula). CRNOBRNJA-ISAILOVIC, J. & China, the Philippines, and Indonesia (DE ALEKSIC, I. (1999): First record of Coluber najadum Roou 1917; DE HAAS 1950; BOSCH 1985; EICHWALD (1831) in Serbia.-Arch. Biol. Sci., Belgrade; 51 (3): 47P-48P. DIMOVSKI, A. (1963): Herpetofauna ISKANDAR & COLIJN 2001). A recent colo- na skopska kotlina. I - zoogeografski i ekoloski pre- nization of Christmas Island, about 320 km gled.- Godisen zbornik Prirodno-matematickog fakul- south of Java, was reported by L. A. SMITH teta, Univerziteta u Skoplju, Skoplje; knjiga 14, (1988). In eastern Indonesia, L. capucinus Biologija2: 189-221. DIMOVSKI, A. (1966): Herpeto- fauna na skopska kotlina. II - faunisticki del.- Godisen has been known from central, southwestern, zbornik Prirodno-matematickog fakulteta, Univerziteta and southeastern Sulawesi (DE ROOU 1917; u Skoplju, Skoplje; knjiga 16, Biologija 4: 179-188. ISKANDAR & TJAN 1996) and from the DZUKIC, G (1972): Herpetoloska zbirka Prirodnjackog Lesser Sunda Islands of Sumbawa, Sumba, muzeja u Beogradu. (Herpetological collection of the Belgrade museum of natural history).- Glasnik Savu, Roti, Timor, Flores, Lomblem, Alor, Prirodnjackog muzeja, Beograd; (Ser. B) 27: 165-180. Lembata, and Wetar (DE ROOU 1917; How et DZUKIC, G (1995): Diverzitet vodozemaca (Amphibia) al. -
Biodiversity Report 2018 -2019
Shivaji University Campus Biodiversity Report 2018 -2019 Prepared by DEPARTMENT OF ENVIRONMENTAL SCIENCE, SHIVAJI UNIVERSITY, KOLHAPUR ©Registrar, Shivaji University, Kolhapur (Maharashtra) All rights reserved. No part of this work be reproduced in any form by mimeograph or any other means without permission in writing from Shivaji University, Kolhapur (Maharashtra). ISBN: 978-93-85190-14-8 Published by: Prof. (Dr.) Vilas D. Nandavadekar Registrar, Shivaji University, Kolhapur. Phone: (0) 0231-2609063 (R) 0231-2609059 (M) +91-9421918134 Email: [email protected] Prof. (Dr.) R. K. Kamat Photo credits: Co-ordinator, Prof. (Dr.) P. D. Raut, Amol Chougule, Internal Quality Assurance Cell, Chetan Bhosale, Amit Mane. Shivaji University, Printed by: Kolhapur- 416 004. Shivaji University Press, (Maharashtra), India. Kolhapur-416 004. Phone: (O) 0231-2609087 Email: [email protected] Dedicated to Late Dr. (Ms.) Nilisha P. Desai Chief Editor Prof. (Dr.) Prakash D. Raut Editorial Team Dr. (Mrs.)Aasawari S. Jadhav Dr. Pallavi R. Bhosale Ms. Nirmala B. Pokharnikar Ms. Aarti A. Parit Ms. Priya R. Vasagadekar Ms. Sonal G. Chonde Ms. Sanjivani T. Chougale Mr. Amol A. Chougule Mr. Chetan S. Bhosale Field Team Ms. Nirmala Pokharnikar Ms. Aarti A. Parit Ms. Priya Vasagadekar Mr. Amol A. Chougule Ms. Sanjivani T. Chougale Mr. Amit R. Mane Mr. Chetan S. Bhosale Mr. Ajay V. Gaud Mr. Harshad V. Suryawanshi Prepared by: Department of Environmental Science, Shivaji University, Kolhapur. ISBN: 978-93-85190-14-8 EDITORIAL .... It is a proud moment for me to put forward the ‘Biodiversity Report 2018 - 2019’ of Shivaji University, Kolhapur. The richness of any area is measured by its species diversity. -
Science for Saving Species Research Update Project 2.3.2 Options Beyond Captivity for Two Critically Endangered Christmas Island Reptiles
Science for Saving Species Research Update Project 2.3.2 Options beyond captivity for two critically endangered Christmas Island reptiles Conservation options for Christmas Island’s blue-tailed skinks Project Overview Introduced predators The blue-tailed skink Several introduced predators (Cryptoblepharus egeriae) threaten these lizard species, and and Lister’s gecko (Lepidodactylus were likely to have significantly listeri) are two endemic reptiles contributed to their extinction in to Christmas Island that are the wild. The wolf snake (Lycodon now presumed to be extinct in capucinus) and giant centipede the Wild. Both were once (Scolopendra subspinipes) are two common on the Island, however such species, and pose ongoing both declined rapidly from the threats to reintroduced wild 1980s, and by 2012 both had populations of skinks and geckos. vanished from the wild. The wolf snake was introduced Fortunately, in 2009 and early to Christmas Island in the 1980s 2010, Parks Australia, with the and is now found across the entire help of Perth Zoo, captured 66 island. On Christmas Island, the wolf blue-tailed skinks and 43 Lister’s snake is known to threaten native geckos to establish captive reptiles via predation. It has also breeding populations on been implicated in the extinction Christmas Island and at Taronga of the Christmas Island pipistrelle Zoo. Captive breeding has (Pipistrellus murrayi). circumvented extinction in Giant centipedes have been the short term, with both present since European settlement captive populations now over of the island in the late 1880s. 1000individuals. However, They predate on a range of native the facilities on Christmas Island species, including native reptiles Image: Renata De Jonge, Parks Australia have reached carrying capacity, like the blue-tailed skink and Blue-tailed skinks within a breeding and there is strong interest in Lister’s gecko. -
Floreana Island Galápagos, Ecuador
FLOREANA ISLAND GALÁPAGOS, ECUADOR FLOREANA ISLAND, GALÁPAGOS Floreana Mockingbird (Mimus trifasciatus) IUCN* Status: Endangered INTERESTING FACTS ABOUT THE FLOREANA MOCKINGBIRD: Locally extinct (extirpated) on Floreana Island The first mockingbird species described Inhabits and feeds on the pollen of the due to invasive rats and cats. It now survives by Charles Darwin during the voyage of Opuntia cactus, which has been impacted only on two invasive free oshore islets. the Beagle in 1835. by introduced grazers on Floreana. Floreana Island, Galápagos is the sixth largest island within the Galápagos archipelago and lies 1,000 km o the coast of Ecuador. In 1978, the Galápagos were designated as a UNESCO World Heritage Site. The Galápagos National Park Directorate manages more than 98 percent of Floreana Island; an agricultural zone (230 ha) and the town of Puerto Valasco Ibarra (42 ha, 140 residents) fills the remaining 2 percent. Floreana Island is an Alliance for Zero Extinction site. WHY IS FLOREANA ISLAND IMPORTANT? Home to 54 threatened species, including species found nowhere else such as Floreana Mockingbird, Floreana Giant Tortoise, and the Floreana Racer. 13 seabird species nest on the island, 4 of which are found only in the Galápagos. FLOREANA ISLAND Galápagos Archipelago, Ecuador Home to 94 plant species found only in the Galápagos, six of which are found 1°17’51”S 90°26’03”W only on Floreana. THE PROBLEM Floreana Island is a paradise of its own; here a small human community of around 150 people live alongside a great, vibrant diversity of native plants and wildlife. Unfortunately, native flora and fauna are not alone in this paradise. -
Galapagos-Brochure.Pdf
THE GALÁPAGOS ARCHIPELAGO A PARADISE THREATENED BY INVASIVE ALIEN SPECIES Island Conservation’s mission is to prevent extinctions by removing invasive species from islands. Our Galápagos Program prevents extinctions and improves human livelihoods by removing invasive alien species (IAS) from islands throughout the Galápagos Archipelago, develops local capacity, and supports our partners’ efforts to control IAS where eradication is not currently possible. WHY GALÁPAGOS? ISOLATION EVOLUTION EXTINCTION RESILIENCE Growing out of the ocean from The Galápagos’ remote location Of the 432 Galápagos species Invasive alien species (IAS) a volcanic hotspot 1,000 km means its islands were colonized assessed for the IUCN* Red are the leading threat to the off the coast of Ecuador, the by only a few species that List, 301 are threatened and Galápagos’ biodiversity and Galápagos Islands are home subsequently radiated into a many only occur in a fraction addressing IAS is a national to a fantastic array of 2,194 multitude of unique species. of their former range due to priority. Removing IAS will allow terrestrial plant and animal Darwin’s finches are a classic IAS. Four native species have threatened plant and animal species, 54% (1,187) of which example of this adaptive already gone extinct to date. populations the opportunity are endemic (found only in the radiation and inspired Darwin’s to recover, increasing their Galápagos). formulation of the theory of resilience to future threats, evolution. such as climate change. BUILDING PARTNERSHIPS AND CAPACITY TO MAKE A DIFFERENCE TAKING ACTION ISLAND CONSERVATION BOLD VISION Government institutions and local NGO’s Island Conservation (IC) is ideally The Galápagos National Park Directorate in the Galápagos are world leaders in IAS positioned to add value as a designer has a vision of an archipelago free of feral eradications from islands.