bioRxiv preprint doi: https://doi.org/10.1101/207746; this version posted October 31, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. 1 1 Genomic features and evolution of the conditionally dispensable 2 chromosome in the tangerine pathotype of Alternaria alternata 3 4 Mingshuang Wang1,2, Huilan Fu1, Xing-Xing Shen2, Ruoxin Ruan3, Nicholas Pun4, Jianping Xu4, 5 Hongye Li1*and Antonis Rokas2* 6 7 1Institute of Biotechnology, Zhejiang University, Hangzhou 310058, China 8 2Department of Biological Sciences, Vanderbilt University, Nashville, Tennessee 37235, USA 9 3Hangzhou Academy of Agricultural Sciences, Hangzhou 310024, China 10 4Department of Biology, McMaster University, Hamilton, Ontario L8S 4K1, Canada 11 12 *Corresponding authors: Hongye Li and Antonis Rokas 13 E-mail address:
[email protected] (H. Li);
[email protected] (A. Rokas) bioRxiv preprint doi: https://doi.org/10.1101/207746; this version posted October 31, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. 2 14 Abstract 15 The tangerine pathotype of the ascomycete fungus Alternaria alternata is the 16 causal agent of citrus brown spot, which can result in significant losses of both yield 17 and marketability for tangerines and tangerine hybrids worldwide. A conditionally 18 dispensable chromosome (CDC), which harbors the host-selective ACT toxin gene 19 cluster, is required for tangerine pathogenicity of A.