A Revision of Axinellidae (Porifera: Demospongiae) of the Central West Atlantic Region
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Taxonomy and Diversity of the Sponge Fauna from Walters Shoal, a Shallow Seamount in the Western Indian Ocean Region
Taxonomy and diversity of the sponge fauna from Walters Shoal, a shallow seamount in the Western Indian Ocean region By Robyn Pauline Payne A thesis submitted in partial fulfilment of the requirements for the degree of Magister Scientiae in the Department of Biodiversity and Conservation Biology, University of the Western Cape. Supervisors: Dr Toufiek Samaai Prof. Mark J. Gibbons Dr Wayne K. Florence The financial assistance of the National Research Foundation (NRF) towards this research is hereby acknowledged. Opinions expressed and conclusions arrived at, are those of the author and are not necessarily to be attributed to the NRF. December 2015 Taxonomy and diversity of the sponge fauna from Walters Shoal, a shallow seamount in the Western Indian Ocean region Robyn Pauline Payne Keywords Indian Ocean Seamount Walters Shoal Sponges Taxonomy Systematics Diversity Biogeography ii Abstract Taxonomy and diversity of the sponge fauna from Walters Shoal, a shallow seamount in the Western Indian Ocean region R. P. Payne MSc Thesis, Department of Biodiversity and Conservation Biology, University of the Western Cape. Seamounts are poorly understood ubiquitous undersea features, with less than 4% sampled for scientific purposes globally. Consequently, the fauna associated with seamounts in the Indian Ocean remains largely unknown, with less than 300 species recorded. One such feature within this region is Walters Shoal, a shallow seamount located on the South Madagascar Ridge, which is situated approximately 400 nautical miles south of Madagascar and 600 nautical miles east of South Africa. Even though it penetrates the euphotic zone (summit is 15 m below the sea surface) and is protected by the Southern Indian Ocean Deep- Sea Fishers Association, there is a paucity of biodiversity and oceanographic data. -
Appendix: Some Important Early Collections of West Indian Type Specimens, with Historical Notes
Appendix: Some important early collections of West Indian type specimens, with historical notes Duchassaing & Michelotti, 1864 between 1841 and 1864, we gain additional information concerning the sponge memoir, starting with the letter dated 8 May 1855. Jacob Gysbert Samuel van Breda A biography of Placide Duchassaing de Fonbressin was (1788-1867) was professor of botany in Franeker (Hol published by his friend Sagot (1873). Although an aristo land), of botany and zoology in Gent (Belgium), and crat by birth, as we learn from Michelotti's last extant then of zoology and geology in Leyden. Later he went to letter to van Breda, Duchassaing did not add de Fon Haarlem, where he was secretary of the Hollandsche bressin to his name until 1864. Duchassaing was born Maatschappij der Wetenschappen, curator of its cabinet around 1819 on Guadeloupe, in a French-Creole family of natural history, and director of Teyler's Museum of of planters. He was sent to school in Paris, first to the minerals, fossils and physical instruments. Van Breda Lycee Louis-le-Grand, then to University. He finished traveled extensively in Europe collecting fossils, especial his studies in 1844 with a doctorate in medicine and two ly in Italy. Michelotti exchanged collections of fossils additional theses in geology and zoology. He then settled with him over a long period of time, and was received as on Guadeloupe as physician. Because of social unrest foreign member of the Hollandsche Maatschappij der after the freeing of native labor, he left Guadeloupe W etenschappen in 1842. The two chief papers of Miche around 1848, and visited several islands of the Antilles lotti on fossils were published by the Hollandsche Maat (notably Nevis, Sint Eustatius, St. -
A Soft Spot for Chemistry–Current Taxonomic and Evolutionary Implications of Sponge Secondary Metabolite Distribution
marine drugs Review A Soft Spot for Chemistry–Current Taxonomic and Evolutionary Implications of Sponge Secondary Metabolite Distribution Adrian Galitz 1 , Yoichi Nakao 2 , Peter J. Schupp 3,4 , Gert Wörheide 1,5,6 and Dirk Erpenbeck 1,5,* 1 Department of Earth and Environmental Sciences, Palaeontology & Geobiology, Ludwig-Maximilians-Universität München, 80333 Munich, Germany; [email protected] (A.G.); [email protected] (G.W.) 2 Graduate School of Advanced Science and Engineering, Waseda University, Shinjuku-ku, Tokyo 169-8555, Japan; [email protected] 3 Institute for Chemistry and Biology of the Marine Environment (ICBM), Carl-von-Ossietzky University Oldenburg, 26111 Wilhelmshaven, Germany; [email protected] 4 Helmholtz Institute for Functional Marine Biodiversity, University of Oldenburg (HIFMB), 26129 Oldenburg, Germany 5 GeoBio-Center, Ludwig-Maximilians-Universität München, 80333 Munich, Germany 6 SNSB-Bavarian State Collection of Palaeontology and Geology, 80333 Munich, Germany * Correspondence: [email protected] Abstract: Marine sponges are the most prolific marine sources for discovery of novel bioactive compounds. Sponge secondary metabolites are sought-after for their potential in pharmaceutical applications, and in the past, they were also used as taxonomic markers alongside the difficult and homoplasy-prone sponge morphology for species delineation (chemotaxonomy). The understanding Citation: Galitz, A.; Nakao, Y.; of phylogenetic distribution and distinctiveness of metabolites to sponge lineages is pivotal to reveal Schupp, P.J.; Wörheide, G.; pathways and evolution of compound production in sponges. This benefits the discovery rate and Erpenbeck, D. A Soft Spot for yield of bioprospecting for novel marine natural products by identifying lineages with high potential Chemistry–Current Taxonomic and Evolutionary Implications of Sponge of being new sources of valuable sponge compounds. -
Deep-Water Sinkholes and Bioherms of South Florida and the Pourtalès Terrace — Habitat and Fauna
BULLETIN OF MARINE SCIENCE, 77(2): 267–296, 2005 CORAL REEF PAPER DEEP-WATER SINKHOLES AND BIOHERMS OF SOUTH FLORIDA AND THE POURTALÈS TERRACE — HABITAT AND FAUNA John K. Reed, Shirley A. Pomponi, Doug Weaver, Charles K. Paull, and Amy E. Wright ABSTRACT Only a small percentage of deep-water reefs have had their benthic and fish re- sources characterized. This study surveyed eight deep-water, high-relief, hard-bot- tom sites off south Florida using human occupied submersibles to characterize habitat and describe the fish and macrobenthic communities: the Naples deep-water sink- hole on the southwest Florida shelf, Jordan and Marathon deep-water sinkholes on the Pourtalès Terrace, and five high-relief bioherms on the Pourtalès Terrace. These submersible dives were the first to enter and explore any of these features. The up- per sinkhole rims ranged from 175 to 461 m in depth and had a maximum relief of 180 m. The Jordan sinkhole may be one of the deepest and largest sinkholes known. The high-relief bioherms occurred at depths of 198–319 m, with a maximum height of 120 m. A total of 26 and 16 fish taxa were identified from the sinkhole and bio- herm sites, respectively. Species of potentially commercial importance included tilefish, sharks, speckled hind, yellowedge grouper, warsaw grouper, snowy grouper, blackbelly rosefish, red porgy, drum, scorpionfish, amberjack, and phycid hakes. In total, 66 Porifera taxa were identified and four are possible new species. Twenty- one species of Cnidaria included Antipatharia (three spp.), stylasterid hydrocorals (five spp.), octocorals (11 spp.), and one scleractinian. -
Proposal for a Revised Classification of the Demospongiae (Porifera) Christine Morrow1 and Paco Cárdenas2,3*
Morrow and Cárdenas Frontiers in Zoology (2015) 12:7 DOI 10.1186/s12983-015-0099-8 DEBATE Open Access Proposal for a revised classification of the Demospongiae (Porifera) Christine Morrow1 and Paco Cárdenas2,3* Abstract Background: Demospongiae is the largest sponge class including 81% of all living sponges with nearly 7,000 species worldwide. Systema Porifera (2002) was the result of a large international collaboration to update the Demospongiae higher taxa classification, essentially based on morphological data. Since then, an increasing number of molecular phylogenetic studies have considerably shaken this taxonomic framework, with numerous polyphyletic groups revealed or confirmed and new clades discovered. And yet, despite a few taxonomical changes, the overall framework of the Systema Porifera classification still stands and is used as it is by the scientific community. This has led to a widening phylogeny/classification gap which creates biases and inconsistencies for the many end-users of this classification and ultimately impedes our understanding of today’s marine ecosystems and evolutionary processes. In an attempt to bridge this phylogeny/classification gap, we propose to officially revise the higher taxa Demospongiae classification. Discussion: We propose a revision of the Demospongiae higher taxa classification, essentially based on molecular data of the last ten years. We recommend the use of three subclasses: Verongimorpha, Keratosa and Heteroscleromorpha. We retain seven (Agelasida, Chondrosiida, Dendroceratida, Dictyoceratida, Haplosclerida, Poecilosclerida, Verongiida) of the 13 orders from Systema Porifera. We recommend the abandonment of five order names (Hadromerida, Halichondrida, Halisarcida, lithistids, Verticillitida) and resurrect or upgrade six order names (Axinellida, Merliida, Spongillida, Sphaerocladina, Suberitida, Tetractinellida). Finally, we create seven new orders (Bubarida, Desmacellida, Polymastiida, Scopalinida, Clionaida, Tethyida, Trachycladida). -
Supplementary Materials: Patterns of Sponge Biodiversity in the Pilbara, Northwestern Australia
Diversity 2016, 8, 21; doi:10.3390/d8040021 S1 of S3 9 Supplementary Materials: Patterns of Sponge Biodiversity in the Pilbara, Northwestern Australia Jane Fromont, Muhammad Azmi Abdul Wahab, Oliver Gomez, Merrick Ekins, Monique Grol and John Norman Ashby Hooper 1. Materials and Methods 1.1. Collation of Sponge Occurrence Data Data of sponge occurrences were collated from databases of the Western Australian Museum (WAM) and Atlas of Living Australia (ALA) [1]. Pilbara sponge data on ALA had been captured in a northern Australian sponge report [2], but with the WAM data, provides a far more comprehensive dataset, in both geographic and taxonomic composition of sponges. Quality control procedures were undertaken to remove obvious duplicate records and those with insufficient or ambiguous species data. Due to differing naming conventions of OTUs by institutions contributing to the two databases and the lack of resources for physical comparison of all OTU specimens, a maximum error of ± 13.5% total species counts was determined for the dataset, to account for potentially unique (differently named OTUs are unique) or overlapping OTUs (differently named OTUs are the same) (157 potential instances identified out of 1164 total OTUs). The amalgamation of these two databases produced a complete occurrence dataset (presence/absence) of all currently described sponge species and OTUs from the region (see Table S1). The dataset follows the new taxonomic classification proposed by [3] and implemented by [4]. The latter source was used to confirm present validities and taxon authorities for known species names. The dataset consists of records identified as (1) described (Linnean) species, (2) records with “cf.” in front of species names which indicates the specimens have some characters of a described species but also differences, which require comparisons with type material, and (3) records as “operational taxonomy units” (OTUs) which are considered to be unique species although further assessments are required to establish their taxonomic status. -
The Chemistry of Marine Sponges∗ 4 Sherif S
The Chemistry of Marine Sponges∗ 4 Sherif S. Ebada and Peter Proksch Contents 4.1 Introduction ................................................................................ 192 4.2 Alkaloids .................................................................................. 193 4.2.1 Manzamine Alkaloids ............................................................. 193 4.2.2 Bromopyrrole Alkaloids .......................................................... 196 4.2.3 Bromotyrosine Derivatives ....................................................... 208 4.3 Peptides .................................................................................... 217 4.4 Terpenes ................................................................................... 240 4.4.1 Sesterterpenes (C25)............................................................... 241 4.4.2 Triterpenes (C30).................................................................. 250 4.5 Concluding Remarks ...................................................................... 268 4.6 Study Questions ........................................................................... 269 References ....................................................................................... 270 Abstract Marine sponges continue to attract wide attention from marine natural product chemists and pharmacologists alike due to their remarkable diversity of bioac- tive compounds. Since the early days of marine natural products research in ∗The section on sponge-derived “terpenes” is from a review article published -
Molecular Phylogenetics Suggests a New Classification and Uncovers Convergent Evolution of Lithistid Demosponges
RESEARCH ARTICLE Deceptive Desmas: Molecular Phylogenetics Suggests a New Classification and Uncovers Convergent Evolution of Lithistid Demosponges Astrid Schuster1,2, Dirk Erpenbeck1,3, Andrzej Pisera4, John Hooper5,6, Monika Bryce5,7, Jane Fromont7, Gert Wo¨ rheide1,2,3* 1. Department of Earth- & Environmental Sciences, Palaeontology and Geobiology, Ludwig-Maximilians- Universita¨tMu¨nchen, Richard-Wagner Str. 10, 80333 Munich, Germany, 2. SNSB – Bavarian State Collections OPEN ACCESS of Palaeontology and Geology, Richard-Wagner Str. 10, 80333 Munich, Germany, 3. GeoBio-CenterLMU, Ludwig-Maximilians-Universita¨t Mu¨nchen, Richard-Wagner Str. 10, 80333 Munich, Germany, 4. Institute of Citation: Schuster A, Erpenbeck D, Pisera A, Paleobiology, Polish Academy of Sciences, ul. Twarda 51/55, 00-818 Warszawa, Poland, 5. Queensland Hooper J, Bryce M, et al. (2015) Deceptive Museum, PO Box 3300, South Brisbane, QLD 4101, Australia, 6. Eskitis Institute for Drug Discovery, Griffith Desmas: Molecular Phylogenetics Suggests a New Classification and Uncovers Convergent Evolution University, Nathan, QLD 4111, Australia, 7. Department of Aquatic Zoology, Western Australian Museum, of Lithistid Demosponges. PLoS ONE 10(1): Locked Bag 49, Welshpool DC, Western Australia, 6986, Australia e116038. doi:10.1371/journal.pone.0116038 *[email protected] Editor: Mikhail V. Matz, University of Texas, United States of America Received: July 3, 2014 Accepted: November 30, 2014 Abstract Published: January 7, 2015 Reconciling the fossil record with molecular phylogenies to enhance the Copyright: ß 2015 Schuster et al. This is an understanding of animal evolution is a challenging task, especially for taxa with a open-access article distributed under the terms of the Creative Commons Attribution License, which mostly poor fossil record, such as sponges (Porifera). -
Oceans of Archaea Abundant Oceanic Crenarchaeota Appear to Derive from Thermophilic Ancestors That Invaded Low-Temperature Marine Environments
Oceans of Archaea Abundant oceanic Crenarchaeota appear to derive from thermophilic ancestors that invaded low-temperature marine environments Edward F. DeLong arth’s microbiota is remarkably per- karyotes), Archaea, and Bacteria. Although al- vasive, thriving at extremely high ternative taxonomic schemes have been recently temperature, low and high pH, high proposed, whole-genome and other analyses E salinity, and low water availability. tend to support Woese’s three-domain concept. One lineage of microbial life in par- Well-known and cultivated archaea generally ticular, the Archaea, is especially adept at ex- fall into several major phenotypic groupings: ploiting environmental extremes. Despite their these include extreme halophiles, methanogens, success in these challenging habitats, the Ar- and extreme thermophiles and thermoacido- chaea may now also be viewed as a philes. Early on, extremely halo- cosmopolitan lot. These microbes philic archaea (haloarchaea) were exist in a wide variety of terres- first noticed as bright-red colonies trial, freshwater, and marine habi- Archaea exist in growing on salted fish or hides. tats, sometimes in very high abun- a wide variety For many years, halophilic isolates dance. The oceanic Marine Group of terrestrial, from salterns, salt deposits, and I Crenarchaeota, for example, ri- freshwater, and landlocked seas provided excellent val total bacterial biomass in wa- marine habitats, model systems for studying adap- ters below 100 m. These wide- tations to high salinity. It was only spread Archaea appear to derive sometimes in much later, however, that it was from thermophilic ancestors that very high realized that these salt-loving invaded diverse low-temperature abundance “bacteria” are actually members environments. -
General Introduction and Objectives 3
General introduction and objectives 3 General introduction: General body organization: The phylum Porifera is commonly referred to as sponges. The phylum, that comprises more than 6,000 species, is divided into three classes: Calcarea, Hexactinellida and Demospongiae. The latter class contains more than 85% of the living species. They are predominantly marine, with the notable exception of the family Spongillidae, an extant group of freshwater demosponges whose fossil record begins in the Cretaceous. Sponges are ubiquitous benthic creatures, found at all latitudes beneath the world's oceans, and from the intertidal to the deep-sea. Sponges are considered as the most basal phylum of metazoans, since most of their features appear to be primitive, and it is widely accepted that multicellular animals consist of a monophyletic group (Zrzavy et al. 1998). Poriferans appear to be diploblastic (Leys 2004; Maldonado 2004), although the two cellular sheets are difficult to homologise with those of the rest of metazoans. They are sessile animals, though it has been shown that some are able to move slowly (up to 4 mm per day) within aquaria (e.g., Bond and Harris 1988; Maldonado and Uriz 1999). They lack organs, possessing cells that develop great number of functions. The sponge body is lined by a pseudoepithelial layer of flat cells (exopinacocytes). Anatomically and physiologically, tissues of most sponges (but carnivorous sponges) are organized around an aquiferous system of excurrent and incurrent canals (Rupert and Barnes 1995). These canals are lined by a pseudoepithelial layer of flat cells (endopinacocytes).Water flows into the sponge body through multiple apertures (ostia) General introduction and objectives 4 to the incurrent canals which end in the choanocyte chambers (Fig. -
The Role of Body Size in Complex Food Webs: a Cold Case
Provided for non-commercial research and educational use only. Not for reproduction, distribution or commercial use. This chapter was originally published in the book Advances in Ecological Research, Vol. 45 published by Elsevier, and the attached copy is provided by Elsevier for the author's benefit and for the benefit of the author's institution, for non-commercial research and educational use including without limitation use in instruction at your institution, sending it to specific colleagues who know you, and providing a copy to your institution’s administrator. All other uses, reproduction and distribution, including without limitation commercial reprints, selling or licensing copies or access, or posting on open internet sites, your personal or institution’s website or repository, are prohibited. For exceptions, permission may be sought for such use through Elsevier's permissions site at: http://www.elsevier.com/locate/permissionusematerial From: Ute Jacob, Aaron Thierry, Ulrich Brose, Wolf E. Arntz, Sofia Berg, Thomas Brey, Ingo Fetzer, Tomas Jonsson, Katja Mintenbeck, Christian Möllmann, Owen Petchey, Jens O. Riede and Jennifer A. Dunne, The Role of Body Size in Complex Food Webs: A Cold Case. In Andrea Belgrano and Julia Reiss, editors: Advances in Ecological Research, Vol. 45, Amsterdam, The Netherlands, 2011, pp. 181-223. ISBN: 978-0-12-386475-8 © Copyright 2011 Elsevier Ltd. Academic press. Author's personal copy The Role of Body Size in Complex Food Webs: A Cold Case UTE JACOB,1,* AARON THIERRY,2,3 ULRICH BROSE,4 WOLF E. ARNTZ,5 SOFIA BERG,6 THOMAS BREY,5 INGO FETZER,7 TOMAS JONSSON,6 KATJA MINTENBECK,5 CHRISTIAN MO¨ LLMANN,1 OWEN L. -
Marine Sponge (Porifera: Demospongiae) Liosina Paradoxa Thiele, 1899 from Sandspit Backwater Mangroves at Karachi Coast, Pakistan
Indian Journal of Geo Marine Sciences Vol. 47 (06), June 2018, pp. 1296-1299 Marine Sponge (Porifera: Demospongiae) Liosina paradoxa Thiele, 1899 from Sandspit backwater mangroves at Karachi coast, Pakistan Hina Jabeen, Seema Shafique*, Zaib-un-Nisa Burhan & Pirzada Jamal Ahmed Siddiqui Centre of Excellence in Marine Biology, University of Karachi, Karachi-75270, Pakistan *[E.Mail: [email protected]] Received 22 August 2016 ; revised 07 December 2016 Marine sponge Liosina paradoxa was recently collected from pneumatophore of Avicennia marina at Sandspit backwater (66°54'25" E, 24°49'20" N), Karachi coast in May 2015. Identification of specimen was based on the structure of siliceous spicules scattered irregularly in mesohyl observed under light microscope and scanning electron microscope. Spicules are megascleres, entirely smooth, strongyle (length = 310-451 ± 59.65 µm, width = 5-8 ± 1.8 µm), microscleres absent. The result has been shown that the species is Liosina paradoxa (Family Dictyonellidae) first time reported from coastal area of Pakistan. [Keywords: Marine sponge; mangroves; Demospongiae; Bubarida; Dictyonellidae; Liosina paradoxa] Introduction derivatives16. Most species of Dictyonellidae found in Mangroves are salt tolerant vegetation that inhabits warm waters. The following ten genera have been tropical and sub-tropical coastal regions and are included in this family; Liosina, Acanthella, considered among the world’s most productive Rhaphoxya, Lipastrotethya, Tethyspira, Scopalina, ecosystems1, which provide food and shelter for a Dictyonella, Phakettia, Svenzea and Stylissa16,18,19. wide variety of organisms2. Fungi, algal (micro and Liosina is massive, encrusting sponge with muddy macro) communities and many other invertebrates appearance. Spicules may scatter irregularly near the (sponges, polychaetes, bryozoans, barnacles and surface in the form of bundles within spongin, mostly molluscs) are the most abundant epibionts of monactines and diactines13,14.