Chapter 13. State of Deep-Sea Coral and Sponge Ecosystems of the U.S
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Taxonomy and Diversity of the Sponge Fauna from Walters Shoal, a Shallow Seamount in the Western Indian Ocean Region
Taxonomy and diversity of the sponge fauna from Walters Shoal, a shallow seamount in the Western Indian Ocean region By Robyn Pauline Payne A thesis submitted in partial fulfilment of the requirements for the degree of Magister Scientiae in the Department of Biodiversity and Conservation Biology, University of the Western Cape. Supervisors: Dr Toufiek Samaai Prof. Mark J. Gibbons Dr Wayne K. Florence The financial assistance of the National Research Foundation (NRF) towards this research is hereby acknowledged. Opinions expressed and conclusions arrived at, are those of the author and are not necessarily to be attributed to the NRF. December 2015 Taxonomy and diversity of the sponge fauna from Walters Shoal, a shallow seamount in the Western Indian Ocean region Robyn Pauline Payne Keywords Indian Ocean Seamount Walters Shoal Sponges Taxonomy Systematics Diversity Biogeography ii Abstract Taxonomy and diversity of the sponge fauna from Walters Shoal, a shallow seamount in the Western Indian Ocean region R. P. Payne MSc Thesis, Department of Biodiversity and Conservation Biology, University of the Western Cape. Seamounts are poorly understood ubiquitous undersea features, with less than 4% sampled for scientific purposes globally. Consequently, the fauna associated with seamounts in the Indian Ocean remains largely unknown, with less than 300 species recorded. One such feature within this region is Walters Shoal, a shallow seamount located on the South Madagascar Ridge, which is situated approximately 400 nautical miles south of Madagascar and 600 nautical miles east of South Africa. Even though it penetrates the euphotic zone (summit is 15 m below the sea surface) and is protected by the Southern Indian Ocean Deep- Sea Fishers Association, there is a paucity of biodiversity and oceanographic data. -
Appendix: Some Important Early Collections of West Indian Type Specimens, with Historical Notes
Appendix: Some important early collections of West Indian type specimens, with historical notes Duchassaing & Michelotti, 1864 between 1841 and 1864, we gain additional information concerning the sponge memoir, starting with the letter dated 8 May 1855. Jacob Gysbert Samuel van Breda A biography of Placide Duchassaing de Fonbressin was (1788-1867) was professor of botany in Franeker (Hol published by his friend Sagot (1873). Although an aristo land), of botany and zoology in Gent (Belgium), and crat by birth, as we learn from Michelotti's last extant then of zoology and geology in Leyden. Later he went to letter to van Breda, Duchassaing did not add de Fon Haarlem, where he was secretary of the Hollandsche bressin to his name until 1864. Duchassaing was born Maatschappij der Wetenschappen, curator of its cabinet around 1819 on Guadeloupe, in a French-Creole family of natural history, and director of Teyler's Museum of of planters. He was sent to school in Paris, first to the minerals, fossils and physical instruments. Van Breda Lycee Louis-le-Grand, then to University. He finished traveled extensively in Europe collecting fossils, especial his studies in 1844 with a doctorate in medicine and two ly in Italy. Michelotti exchanged collections of fossils additional theses in geology and zoology. He then settled with him over a long period of time, and was received as on Guadeloupe as physician. Because of social unrest foreign member of the Hollandsche Maatschappij der after the freeing of native labor, he left Guadeloupe W etenschappen in 1842. The two chief papers of Miche around 1848, and visited several islands of the Antilles lotti on fossils were published by the Hollandsche Maat (notably Nevis, Sint Eustatius, St. -
Lithistid’ Tetractinellid
1 Systematics of ‘lithistid’ tetractinellid 2 demosponges from the Tropical Western 3 Atlantic – implications for phylodiversity 4 and bathymetric distribution 1,2 3 4 5 Astrid Schuster , Shirley A. Pomponi , Andrzej Pisera , Paco 5 6 1,7,8 1,8 6 Cardenas´ , Michelle Kelly , Gert Worheide¨ , and Dirk Erpenbeck 1 7 Department of Earth- & Environmental Sciences, Palaeontology and Geobiology, 8 Ludwig-Maximilians-Universitat¨ M ¨unchen, Richard-Wagner Str. 10, 80333 Munich, 9 Germany 2 10 Current address: Department of Biology, NordCEE, Southern University of Denmark, 11 Campusvej 55, 5300 M Odense, Denmark 3 12 Harbor Branch Oceanographic Institute, Florida Atlantic University, 5600 U.S. 1 North, 13 Ft Pierce, FL 34946, USA 4 14 Institute of Paleobiology, Polish Academy of Sciences, ul. Twarda 51/55, 00-818 15 Warszawa, Poland 5 16 Pharmacognosy, Department of Medicinal Chemistry, Uppsala University, Husargatan 17 3, 75123 Uppsala, Sweden 6 18 National Centre for Coasts and Oceans, National Institute of Water and Atmospheric 19 Research, Private Bag 99940, Newmarket, Auckland, 1149, New Zealand 7 20 SNSB-Bayerische Staatssammlung f ¨urPalaontologie¨ und Geologie, Richard-Wagner 21 Str. 10, 80333 Munich, Germany 8 22 GeoBio-CenterLMU, Ludwig-Maximilians-Universitat¨ M ¨unchen, Richard-Wagner Str. 10, 23 80333 Munich, Germany 24 Corresponding author: 1,8 25 Dirk Erpenbeck 26 Email address: [email protected] 27 ABSTRACT PeerJ Preprints | https://doi.org/10.7287/peerj.preprints.27673v1 | CC BY 4.0 Open Access | rec: 22 Apr 2019, publ: 22 Apr 2019 28 Background Among all present demosponges, lithistids represent a polyphyletic group with 29 exceptionally well preserved fossils dating back to the Cambrian. -
A Soft Spot for Chemistry–Current Taxonomic and Evolutionary Implications of Sponge Secondary Metabolite Distribution
marine drugs Review A Soft Spot for Chemistry–Current Taxonomic and Evolutionary Implications of Sponge Secondary Metabolite Distribution Adrian Galitz 1 , Yoichi Nakao 2 , Peter J. Schupp 3,4 , Gert Wörheide 1,5,6 and Dirk Erpenbeck 1,5,* 1 Department of Earth and Environmental Sciences, Palaeontology & Geobiology, Ludwig-Maximilians-Universität München, 80333 Munich, Germany; [email protected] (A.G.); [email protected] (G.W.) 2 Graduate School of Advanced Science and Engineering, Waseda University, Shinjuku-ku, Tokyo 169-8555, Japan; [email protected] 3 Institute for Chemistry and Biology of the Marine Environment (ICBM), Carl-von-Ossietzky University Oldenburg, 26111 Wilhelmshaven, Germany; [email protected] 4 Helmholtz Institute for Functional Marine Biodiversity, University of Oldenburg (HIFMB), 26129 Oldenburg, Germany 5 GeoBio-Center, Ludwig-Maximilians-Universität München, 80333 Munich, Germany 6 SNSB-Bavarian State Collection of Palaeontology and Geology, 80333 Munich, Germany * Correspondence: [email protected] Abstract: Marine sponges are the most prolific marine sources for discovery of novel bioactive compounds. Sponge secondary metabolites are sought-after for their potential in pharmaceutical applications, and in the past, they were also used as taxonomic markers alongside the difficult and homoplasy-prone sponge morphology for species delineation (chemotaxonomy). The understanding Citation: Galitz, A.; Nakao, Y.; of phylogenetic distribution and distinctiveness of metabolites to sponge lineages is pivotal to reveal Schupp, P.J.; Wörheide, G.; pathways and evolution of compound production in sponges. This benefits the discovery rate and Erpenbeck, D. A Soft Spot for yield of bioprospecting for novel marine natural products by identifying lineages with high potential Chemistry–Current Taxonomic and Evolutionary Implications of Sponge of being new sources of valuable sponge compounds. -
Deep-Water Sinkholes and Bioherms of South Florida and the Pourtalès Terrace — Habitat and Fauna
BULLETIN OF MARINE SCIENCE, 77(2): 267–296, 2005 CORAL REEF PAPER DEEP-WATER SINKHOLES AND BIOHERMS OF SOUTH FLORIDA AND THE POURTALÈS TERRACE — HABITAT AND FAUNA John K. Reed, Shirley A. Pomponi, Doug Weaver, Charles K. Paull, and Amy E. Wright ABSTRACT Only a small percentage of deep-water reefs have had their benthic and fish re- sources characterized. This study surveyed eight deep-water, high-relief, hard-bot- tom sites off south Florida using human occupied submersibles to characterize habitat and describe the fish and macrobenthic communities: the Naples deep-water sink- hole on the southwest Florida shelf, Jordan and Marathon deep-water sinkholes on the Pourtalès Terrace, and five high-relief bioherms on the Pourtalès Terrace. These submersible dives were the first to enter and explore any of these features. The up- per sinkhole rims ranged from 175 to 461 m in depth and had a maximum relief of 180 m. The Jordan sinkhole may be one of the deepest and largest sinkholes known. The high-relief bioherms occurred at depths of 198–319 m, with a maximum height of 120 m. A total of 26 and 16 fish taxa were identified from the sinkhole and bio- herm sites, respectively. Species of potentially commercial importance included tilefish, sharks, speckled hind, yellowedge grouper, warsaw grouper, snowy grouper, blackbelly rosefish, red porgy, drum, scorpionfish, amberjack, and phycid hakes. In total, 66 Porifera taxa were identified and four are possible new species. Twenty- one species of Cnidaria included Antipatharia (three spp.), stylasterid hydrocorals (five spp.), octocorals (11 spp.), and one scleractinian. -
Proposal for a Revised Classification of the Demospongiae (Porifera) Christine Morrow1 and Paco Cárdenas2,3*
Morrow and Cárdenas Frontiers in Zoology (2015) 12:7 DOI 10.1186/s12983-015-0099-8 DEBATE Open Access Proposal for a revised classification of the Demospongiae (Porifera) Christine Morrow1 and Paco Cárdenas2,3* Abstract Background: Demospongiae is the largest sponge class including 81% of all living sponges with nearly 7,000 species worldwide. Systema Porifera (2002) was the result of a large international collaboration to update the Demospongiae higher taxa classification, essentially based on morphological data. Since then, an increasing number of molecular phylogenetic studies have considerably shaken this taxonomic framework, with numerous polyphyletic groups revealed or confirmed and new clades discovered. And yet, despite a few taxonomical changes, the overall framework of the Systema Porifera classification still stands and is used as it is by the scientific community. This has led to a widening phylogeny/classification gap which creates biases and inconsistencies for the many end-users of this classification and ultimately impedes our understanding of today’s marine ecosystems and evolutionary processes. In an attempt to bridge this phylogeny/classification gap, we propose to officially revise the higher taxa Demospongiae classification. Discussion: We propose a revision of the Demospongiae higher taxa classification, essentially based on molecular data of the last ten years. We recommend the use of three subclasses: Verongimorpha, Keratosa and Heteroscleromorpha. We retain seven (Agelasida, Chondrosiida, Dendroceratida, Dictyoceratida, Haplosclerida, Poecilosclerida, Verongiida) of the 13 orders from Systema Porifera. We recommend the abandonment of five order names (Hadromerida, Halichondrida, Halisarcida, lithistids, Verticillitida) and resurrect or upgrade six order names (Axinellida, Merliida, Spongillida, Sphaerocladina, Suberitida, Tetractinellida). Finally, we create seven new orders (Bubarida, Desmacellida, Polymastiida, Scopalinida, Clionaida, Tethyida, Trachycladida). -
Supplementary Materials: Patterns of Sponge Biodiversity in the Pilbara, Northwestern Australia
Diversity 2016, 8, 21; doi:10.3390/d8040021 S1 of S3 9 Supplementary Materials: Patterns of Sponge Biodiversity in the Pilbara, Northwestern Australia Jane Fromont, Muhammad Azmi Abdul Wahab, Oliver Gomez, Merrick Ekins, Monique Grol and John Norman Ashby Hooper 1. Materials and Methods 1.1. Collation of Sponge Occurrence Data Data of sponge occurrences were collated from databases of the Western Australian Museum (WAM) and Atlas of Living Australia (ALA) [1]. Pilbara sponge data on ALA had been captured in a northern Australian sponge report [2], but with the WAM data, provides a far more comprehensive dataset, in both geographic and taxonomic composition of sponges. Quality control procedures were undertaken to remove obvious duplicate records and those with insufficient or ambiguous species data. Due to differing naming conventions of OTUs by institutions contributing to the two databases and the lack of resources for physical comparison of all OTU specimens, a maximum error of ± 13.5% total species counts was determined for the dataset, to account for potentially unique (differently named OTUs are unique) or overlapping OTUs (differently named OTUs are the same) (157 potential instances identified out of 1164 total OTUs). The amalgamation of these two databases produced a complete occurrence dataset (presence/absence) of all currently described sponge species and OTUs from the region (see Table S1). The dataset follows the new taxonomic classification proposed by [3] and implemented by [4]. The latter source was used to confirm present validities and taxon authorities for known species names. The dataset consists of records identified as (1) described (Linnean) species, (2) records with “cf.” in front of species names which indicates the specimens have some characters of a described species but also differences, which require comparisons with type material, and (3) records as “operational taxonomy units” (OTUs) which are considered to be unique species although further assessments are required to establish their taxonomic status. -
Is There a Mediterranean Cold-Water Coral Sponge Fauna?
fmars-08-662899 June 9, 2021 Time: 17:47 # 1 ORIGINAL RESEARCH published: 15 June 2021 doi: 10.3389/fmars.2021.662899 Mediterranean Coral Provinces as a Sponge Diversity Reservoir: Is There a Mediterranean Cold-Water Coral Sponge Fauna? Andreu Santín1*, Jordi Grinyó1,2, Maria Jesús Uriz3, Claudio Lo Iacono1, Josep Maria Gili1 and Pere Puig1 1 Institut de Ciències del Mar (ICM-CSIC), Barcelona, Spain, 2 Department of Ocean Systems Sciences, NIOZ Royal Netherlands Institute for Sea Research and Utrecht University, Den Burg, Netherlands, 3 Centre d’Estudis Avançats de Blanes (CEAB-CSIC), Blanes, Spain Cold-water coral reefs (CWC) are known to be biodiversity hotspots, however, the sponge assemblages found to dwell within these habitats haven not been studied in depth to date in the Mediterranean Sea. The present article provides the first insight Edited by: on the associated sponge fauna of the recently discovered CWC communities on the Shirley A. Pomponi, Florida Atlantic University, Catalan Margin and, to a lesser extent, the Cabliers Coral Mound Province, while also United States reviewing the current knowledge of the sponge fauna dwelling in all the Mediterranean Reviewed by: CWC provinces. In regards to the studied areas, some rare species are cited for Sergi Taboada, Autonomous University of Madrid, the first time in the Mediterranean or redescribed, while two of them, Hamacantha Spain (Hamacantha) hortae sp. nov. and Spongosorites cabliersi sp. nov. are new to science. Giorgio Bavestrello, At a basin scale, Mediterranean CWC appear as poriferan biodiversity hotspots, yet University of Genoa, Italy current diversity values on each site rather represent a small fraction of its actual *Correspondence: Andreu Santín fauna. -
The Chemistry of Marine Sponges∗ 4 Sherif S
The Chemistry of Marine Sponges∗ 4 Sherif S. Ebada and Peter Proksch Contents 4.1 Introduction ................................................................................ 192 4.2 Alkaloids .................................................................................. 193 4.2.1 Manzamine Alkaloids ............................................................. 193 4.2.2 Bromopyrrole Alkaloids .......................................................... 196 4.2.3 Bromotyrosine Derivatives ....................................................... 208 4.3 Peptides .................................................................................... 217 4.4 Terpenes ................................................................................... 240 4.4.1 Sesterterpenes (C25)............................................................... 241 4.4.2 Triterpenes (C30).................................................................. 250 4.5 Concluding Remarks ...................................................................... 268 4.6 Study Questions ........................................................................... 269 References ....................................................................................... 270 Abstract Marine sponges continue to attract wide attention from marine natural product chemists and pharmacologists alike due to their remarkable diversity of bioac- tive compounds. Since the early days of marine natural products research in ∗The section on sponge-derived “terpenes” is from a review article published -
Molecular Phylogenetics Suggests a New Classification and Uncovers Convergent Evolution of Lithistid Demosponges
RESEARCH ARTICLE Deceptive Desmas: Molecular Phylogenetics Suggests a New Classification and Uncovers Convergent Evolution of Lithistid Demosponges Astrid Schuster1,2, Dirk Erpenbeck1,3, Andrzej Pisera4, John Hooper5,6, Monika Bryce5,7, Jane Fromont7, Gert Wo¨ rheide1,2,3* 1. Department of Earth- & Environmental Sciences, Palaeontology and Geobiology, Ludwig-Maximilians- Universita¨tMu¨nchen, Richard-Wagner Str. 10, 80333 Munich, Germany, 2. SNSB – Bavarian State Collections OPEN ACCESS of Palaeontology and Geology, Richard-Wagner Str. 10, 80333 Munich, Germany, 3. GeoBio-CenterLMU, Ludwig-Maximilians-Universita¨t Mu¨nchen, Richard-Wagner Str. 10, 80333 Munich, Germany, 4. Institute of Citation: Schuster A, Erpenbeck D, Pisera A, Paleobiology, Polish Academy of Sciences, ul. Twarda 51/55, 00-818 Warszawa, Poland, 5. Queensland Hooper J, Bryce M, et al. (2015) Deceptive Museum, PO Box 3300, South Brisbane, QLD 4101, Australia, 6. Eskitis Institute for Drug Discovery, Griffith Desmas: Molecular Phylogenetics Suggests a New Classification and Uncovers Convergent Evolution University, Nathan, QLD 4111, Australia, 7. Department of Aquatic Zoology, Western Australian Museum, of Lithistid Demosponges. PLoS ONE 10(1): Locked Bag 49, Welshpool DC, Western Australia, 6986, Australia e116038. doi:10.1371/journal.pone.0116038 *[email protected] Editor: Mikhail V. Matz, University of Texas, United States of America Received: July 3, 2014 Accepted: November 30, 2014 Abstract Published: January 7, 2015 Reconciling the fossil record with molecular phylogenies to enhance the Copyright: ß 2015 Schuster et al. This is an understanding of animal evolution is a challenging task, especially for taxa with a open-access article distributed under the terms of the Creative Commons Attribution License, which mostly poor fossil record, such as sponges (Porifera). -
Fish, Coral, and Sponge Assemblages Associated with Altiphotic and Mesophotic Reefs Along the Guánica Biosphere Reserve Continental Shelf Edge, Southwest Puerto Rico
ORIGINAL RESEARCH published: 10 September 2018 doi: 10.3389/fmars.2018.00303 Fish, Coral, and Sponge Assemblages Associated With Altiphotic and Mesophotic Reefs Along the Guánica Biosphere Reserve Continental Shelf Edge, Southwest Puerto Rico Jaaziel E. García-Hernández 1†, Phillip J. Sanchez 1,2†, Nicholas M. Hammerman 1,3† and Nikolaos V. Schizas 1* 1 2 Edited by: Department of Marine Sciences, University of Puerto Rico at Mayagüez, Mayagüez, PR, United States, Department of 3 Yehuda Benayahu, Marine Biology, Texas A&M University at Galveston, Galveston, TX, United States, Gehrmann Laboratories, School of Tel Aviv University, Israel Biological Sciences, University of Queensland, St Lucia, QLD, Australia Reviewed by: Darren James Coker, The benthic and fish communities of the central portion of the Guánica, Puerto Rico King Abdullah University of Science shelf edge were studied to determine species abundance, distributions and species and Technology, Saudi Arabia Jacob L. Johansen, overlap between two depth stratifications, 20 and 45m, at eight sites. A total of 67 fish New York University Abu Dhabi, species belonging to 21 families were identified. Similar species richness estimates were United Arab Emirates observed between depths, though fish assemblage composition differed significantly, *Correspondence: Nikolaos V. Schizas with observable changes in feeding guild contributions of herbivore and omnivore [email protected] (20 m) to a deeper assemblage composed of piscivores and planktivores (45 m). Coral †These authors have contributed assemblages consisted of 31 species at 20 m and 11 species at 45 m, accounting for equally to this work 17.0% (±1.76 SE) and 2.6% (±0.89 SE) benthic cover for the altiphotic and mesophotic surveys, respectively. -
Sponge Bioerosion and Habitat Degradation on Indonesian Coral Reefs
Sponge bioerosion and habitat degradation on Indonesian coral reefs by Joseph Marlow A thesis submitted to Victoria University of Wellington in fulfilment of the requirements for the degree of Doctor of Philosophy 2017 2 Acknowledgments Firstly I would like to thank my primary supervisor, Associate Professor James Bell, for his unwavering support and advice these past three years. I feel very lucky to have had James as my supervisor, his help and guidance whether it was in the field, in the lab or in relation to the many many manuscript drafts I sent him has always been fantastic. I would also like to thank my secondary supervisor, Professor Simon Davy, in particular for his advice about Symbiodinium and photophysiology but also for his overall support and excellent feedback on manuscripts. This research could not have happened without the funding and support from Operation Wallacea. I would like to thank in particular Pippa Mansell for her incredible management of the research station and thank both her and Chris Majors for all their support and help with my research. Thanks to all the Indonesian staff who kept me fed, in the water and made sure I always had a cold Bintang waiting for me at the end of the day. I am incredibly grateful for the support and funding provided by VUW, without which I would not have been able to complete this PhD. Thanks also to the PADI foundation which also provided research funding and Daniel LeDuc and Dennis Gordon at NIWA for their help and providing access to the SEM.