Is There a Mediterranean Cold-Water Coral Sponge Fauna?
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Taxonomy and Diversity of the Sponge Fauna from Walters Shoal, a Shallow Seamount in the Western Indian Ocean Region
Taxonomy and diversity of the sponge fauna from Walters Shoal, a shallow seamount in the Western Indian Ocean region By Robyn Pauline Payne A thesis submitted in partial fulfilment of the requirements for the degree of Magister Scientiae in the Department of Biodiversity and Conservation Biology, University of the Western Cape. Supervisors: Dr Toufiek Samaai Prof. Mark J. Gibbons Dr Wayne K. Florence The financial assistance of the National Research Foundation (NRF) towards this research is hereby acknowledged. Opinions expressed and conclusions arrived at, are those of the author and are not necessarily to be attributed to the NRF. December 2015 Taxonomy and diversity of the sponge fauna from Walters Shoal, a shallow seamount in the Western Indian Ocean region Robyn Pauline Payne Keywords Indian Ocean Seamount Walters Shoal Sponges Taxonomy Systematics Diversity Biogeography ii Abstract Taxonomy and diversity of the sponge fauna from Walters Shoal, a shallow seamount in the Western Indian Ocean region R. P. Payne MSc Thesis, Department of Biodiversity and Conservation Biology, University of the Western Cape. Seamounts are poorly understood ubiquitous undersea features, with less than 4% sampled for scientific purposes globally. Consequently, the fauna associated with seamounts in the Indian Ocean remains largely unknown, with less than 300 species recorded. One such feature within this region is Walters Shoal, a shallow seamount located on the South Madagascar Ridge, which is situated approximately 400 nautical miles south of Madagascar and 600 nautical miles east of South Africa. Even though it penetrates the euphotic zone (summit is 15 m below the sea surface) and is protected by the Southern Indian Ocean Deep- Sea Fishers Association, there is a paucity of biodiversity and oceanographic data. -
Appendix: Some Important Early Collections of West Indian Type Specimens, with Historical Notes
Appendix: Some important early collections of West Indian type specimens, with historical notes Duchassaing & Michelotti, 1864 between 1841 and 1864, we gain additional information concerning the sponge memoir, starting with the letter dated 8 May 1855. Jacob Gysbert Samuel van Breda A biography of Placide Duchassaing de Fonbressin was (1788-1867) was professor of botany in Franeker (Hol published by his friend Sagot (1873). Although an aristo land), of botany and zoology in Gent (Belgium), and crat by birth, as we learn from Michelotti's last extant then of zoology and geology in Leyden. Later he went to letter to van Breda, Duchassaing did not add de Fon Haarlem, where he was secretary of the Hollandsche bressin to his name until 1864. Duchassaing was born Maatschappij der Wetenschappen, curator of its cabinet around 1819 on Guadeloupe, in a French-Creole family of natural history, and director of Teyler's Museum of of planters. He was sent to school in Paris, first to the minerals, fossils and physical instruments. Van Breda Lycee Louis-le-Grand, then to University. He finished traveled extensively in Europe collecting fossils, especial his studies in 1844 with a doctorate in medicine and two ly in Italy. Michelotti exchanged collections of fossils additional theses in geology and zoology. He then settled with him over a long period of time, and was received as on Guadeloupe as physician. Because of social unrest foreign member of the Hollandsche Maatschappij der after the freeing of native labor, he left Guadeloupe W etenschappen in 1842. The two chief papers of Miche around 1848, and visited several islands of the Antilles lotti on fossils were published by the Hollandsche Maat (notably Nevis, Sint Eustatius, St. -
A Soft Spot for Chemistry–Current Taxonomic and Evolutionary Implications of Sponge Secondary Metabolite Distribution
marine drugs Review A Soft Spot for Chemistry–Current Taxonomic and Evolutionary Implications of Sponge Secondary Metabolite Distribution Adrian Galitz 1 , Yoichi Nakao 2 , Peter J. Schupp 3,4 , Gert Wörheide 1,5,6 and Dirk Erpenbeck 1,5,* 1 Department of Earth and Environmental Sciences, Palaeontology & Geobiology, Ludwig-Maximilians-Universität München, 80333 Munich, Germany; [email protected] (A.G.); [email protected] (G.W.) 2 Graduate School of Advanced Science and Engineering, Waseda University, Shinjuku-ku, Tokyo 169-8555, Japan; [email protected] 3 Institute for Chemistry and Biology of the Marine Environment (ICBM), Carl-von-Ossietzky University Oldenburg, 26111 Wilhelmshaven, Germany; [email protected] 4 Helmholtz Institute for Functional Marine Biodiversity, University of Oldenburg (HIFMB), 26129 Oldenburg, Germany 5 GeoBio-Center, Ludwig-Maximilians-Universität München, 80333 Munich, Germany 6 SNSB-Bavarian State Collection of Palaeontology and Geology, 80333 Munich, Germany * Correspondence: [email protected] Abstract: Marine sponges are the most prolific marine sources for discovery of novel bioactive compounds. Sponge secondary metabolites are sought-after for their potential in pharmaceutical applications, and in the past, they were also used as taxonomic markers alongside the difficult and homoplasy-prone sponge morphology for species delineation (chemotaxonomy). The understanding Citation: Galitz, A.; Nakao, Y.; of phylogenetic distribution and distinctiveness of metabolites to sponge lineages is pivotal to reveal Schupp, P.J.; Wörheide, G.; pathways and evolution of compound production in sponges. This benefits the discovery rate and Erpenbeck, D. A Soft Spot for yield of bioprospecting for novel marine natural products by identifying lineages with high potential Chemistry–Current Taxonomic and Evolutionary Implications of Sponge of being new sources of valuable sponge compounds. -
New Species from the Deep Pacific Suggest That Carnivorous Sponges Date Back to the Early Jurassic. Some Deep-Sea Poecilosclerid
CORE Metadata, citation and similar papers at core.ac.uk Provided by Nature Precedings New species from the deep Pacific suggest that carnivorous sponges date back to the Early Jurassic. Jean Vacelet1 & Michelle Kelly2 1Centre d’Océanologie de Marseille, Aix-Marseille Université, CNRS UMR 6540 DIMAR, Station Marine d’Endoume, rue Batterie des Lions, 13007 Marseille, France ([email protected]) 2National Centre for Aquatic Biodiversity and Biosecurity, National Institute of Water & Atmospheric Research Ltd, P. O. Box 109-695, Newmarket, Auckland, New Zealand ([email protected]) Some deep-sea poecilosclerid sponges (Porifera) have developed a carnivorous feeding habit that is very surprising in sponges1. As shown by the typical morphology of their spicules, they most probably evolved from “normal sponges” under the difficult conditions of a deep-sea environment. Such evolution, which implies the loss of the diagnostic character of the phylum Porifera, i.e. a filter feeding habit through a complex aquiferous system, should be of great interest in the understanding of the origin of metazoans. Some scenarios, based on the hypothesis of the paraphyly of Porifera, allege that metazoans could derive from a sponge filter-feeding body plan. A difficulty, however, is to imagine the transition from a sponge grade of organization to other organization plans2. Carnivorous sponges demonstrate that a functional, non filter-feeding animal may derive from a conventional sponge body plan, albeit nothing is known of the age of this evolution. Here we report that newly discovered species of Chondrocladia from the deep Pacific display special spicules that were previously recorded only as isolated spicules from sediment dating back to the Early Jurassic and Miocene periods. -
Proposal for a Revised Classification of the Demospongiae (Porifera) Christine Morrow1 and Paco Cárdenas2,3*
Morrow and Cárdenas Frontiers in Zoology (2015) 12:7 DOI 10.1186/s12983-015-0099-8 DEBATE Open Access Proposal for a revised classification of the Demospongiae (Porifera) Christine Morrow1 and Paco Cárdenas2,3* Abstract Background: Demospongiae is the largest sponge class including 81% of all living sponges with nearly 7,000 species worldwide. Systema Porifera (2002) was the result of a large international collaboration to update the Demospongiae higher taxa classification, essentially based on morphological data. Since then, an increasing number of molecular phylogenetic studies have considerably shaken this taxonomic framework, with numerous polyphyletic groups revealed or confirmed and new clades discovered. And yet, despite a few taxonomical changes, the overall framework of the Systema Porifera classification still stands and is used as it is by the scientific community. This has led to a widening phylogeny/classification gap which creates biases and inconsistencies for the many end-users of this classification and ultimately impedes our understanding of today’s marine ecosystems and evolutionary processes. In an attempt to bridge this phylogeny/classification gap, we propose to officially revise the higher taxa Demospongiae classification. Discussion: We propose a revision of the Demospongiae higher taxa classification, essentially based on molecular data of the last ten years. We recommend the use of three subclasses: Verongimorpha, Keratosa and Heteroscleromorpha. We retain seven (Agelasida, Chondrosiida, Dendroceratida, Dictyoceratida, Haplosclerida, Poecilosclerida, Verongiida) of the 13 orders from Systema Porifera. We recommend the abandonment of five order names (Hadromerida, Halichondrida, Halisarcida, lithistids, Verticillitida) and resurrect or upgrade six order names (Axinellida, Merliida, Spongillida, Sphaerocladina, Suberitida, Tetractinellida). Finally, we create seven new orders (Bubarida, Desmacellida, Polymastiida, Scopalinida, Clionaida, Tethyida, Trachycladida). -
Carnivorous Sponges of the Atlantic and Arctic Oceans
&DUQLYRURXVVSRQJHVRIWKH$WODQWLFDQG $UFWLF2FHDQV 3K\ORJHQ\WD[RQRP\GLVWULEXWLRQDQGPLFURELDODVVRFLDWLRQVRIWKH &ODGRUKL]LGDH 'HPRVSRQJLDH3RHFLORVFOHULGD -RQ7KRPDVVHQ+HVWHWXQ Dissertation for the degree of philosophiae doctor (PhD) at the University of Bergen 'LVVHUWDWLRQGDWH1RYHPEHUWK © Copyright Jon Thomassen Hestetun The material in this publication is protected by copyright law. Year: 2016 Title: Carnivorous sponges of the Atlantic and Arctic Oceans Phylogeny, taxonomy, distribution and microbial associations of the Cladorhizidae (Demospongiae, Poecilosclerida) Author: Jon Thomassen Hestetun Print: AiT Bjerch AS / University of Bergen 3 Scientific environment This PhD project was financed through a four-year PhD position at the University of Bergen, and the study was conducted at the Department of Biology, Marine biodiversity research group, and the Centre of Excellence (SFF) Centre for Geobiology at the University of Bergen. The work was additionally funded by grants from the Norwegian Biodiversity Centre (grant to H.T. Rapp, project number 70184219), the Norwegian Academy of Science and Letters (grant to H.T. Rapp), the Research Council of Norway (through contract number 179560), the SponGES project through Horizon 2020, the European Union Framework Programme for Research and Innovation (grant agreement No 679849), the Meltzer Fund, and the Joint Fund for the Advancement of Biological Research at the University of Bergen. 4 5 Acknowledgements I have, initially through my master’s thesis and now during these four years of my PhD, in all been involved with carnivorous sponges for some six years. Trying to look back and somehow summarizing my experience with this work a certain realization springs to mind: It took some time before I understood my luck. My first in-depth exposure to sponges was in undergraduate zoology, and I especially remember watching “The Shape of Life”, an American PBS-produced documentary series focusing on the different animal phyla, with an enthusiastic Dr. -
Microbiome Exploration of Deep-Sea Carnivorous Cladorhizidae Sponges
Microbiome exploration of deep-sea carnivorous Cladorhizidae sponges by Joost Theo Petra Verhoeven A Thesis submitted to the School of Graduate Studies in partial fulfillment of the requirements for the degree of Doctor of Philosophy Department of Biology Memorial University of Newfoundland March 2019 St. John’s, Newfoundland and Labrador ABSTRACT Members of the sponge family Cladorhizidae are unique in having replaced the typical filter-feeding strategy of sponges by a predatory lifestyle, capturing and digesting small prey. These carnivorous sponges are found in many different environments, but are particularly abundant in deep waters, where they constitute a substantial component of the benthos. Sponges are known to host a wide range of microbial associates (microbiome) important for host health, but the extent of the microbiome in carnivorous sponges has never been extensively investigated and their importance is poorly understood. In this thesis, the microbiome of two deep-sea carnivorous sponge species (Chondrocladia grandis and Cladorhiza oxeata) is investigated for the first time, leveraging recent advances in high-throughput sequencing and through custom developed bioinformatic and molecular methods. Microbiome analyses showed that the carnivorous sponges co-occur with microorganisms and large differences in the composition and type of associations were observed between sponge species. Tissues of C. grandis hosted diverse bacterial communities, similar in composition between individuals, in stark contrast to C. oxeata where low microbial diversity was found with a high host-to-host variability. In C. grandis the microbiome was not homogeneous throughout the host tissue, and significant shifts occured within community members across anatomical regions, with the enrichment of specific bacterial taxa in particular anatomical niches, indicating a potential symbiotic role of such taxa within processes like prey digestion and chemolithoautotrophy. -
Supplementary Materials: Patterns of Sponge Biodiversity in the Pilbara, Northwestern Australia
Diversity 2016, 8, 21; doi:10.3390/d8040021 S1 of S3 9 Supplementary Materials: Patterns of Sponge Biodiversity in the Pilbara, Northwestern Australia Jane Fromont, Muhammad Azmi Abdul Wahab, Oliver Gomez, Merrick Ekins, Monique Grol and John Norman Ashby Hooper 1. Materials and Methods 1.1. Collation of Sponge Occurrence Data Data of sponge occurrences were collated from databases of the Western Australian Museum (WAM) and Atlas of Living Australia (ALA) [1]. Pilbara sponge data on ALA had been captured in a northern Australian sponge report [2], but with the WAM data, provides a far more comprehensive dataset, in both geographic and taxonomic composition of sponges. Quality control procedures were undertaken to remove obvious duplicate records and those with insufficient or ambiguous species data. Due to differing naming conventions of OTUs by institutions contributing to the two databases and the lack of resources for physical comparison of all OTU specimens, a maximum error of ± 13.5% total species counts was determined for the dataset, to account for potentially unique (differently named OTUs are unique) or overlapping OTUs (differently named OTUs are the same) (157 potential instances identified out of 1164 total OTUs). The amalgamation of these two databases produced a complete occurrence dataset (presence/absence) of all currently described sponge species and OTUs from the region (see Table S1). The dataset follows the new taxonomic classification proposed by [3] and implemented by [4]. The latter source was used to confirm present validities and taxon authorities for known species names. The dataset consists of records identified as (1) described (Linnean) species, (2) records with “cf.” in front of species names which indicates the specimens have some characters of a described species but also differences, which require comparisons with type material, and (3) records as “operational taxonomy units” (OTUs) which are considered to be unique species although further assessments are required to establish their taxonomic status. -
Chapter 13. State of Deep-Sea Coral and Sponge Ecosystems of the U.S
State of Deep‐Sea Coral and Sponge Ecosystems of the Southeast United States Chapter 13 in The State of Deep‐Sea Coral and Sponge Ecosystems of the United States Report Recommended citation: Hourigan TF, Reed J, Pomponi S, Ross SW, David AW, Harter S (2017) State of Deep‐Sea Coral and Sponge Ecosystems of the Southeast United States. In: Hourigan TF, Etnoyer, PJ, Cairns, SD (eds.). The State of Deep‐Sea Coral and Sponge Ecosystems of the United States. NOAA Technical Memorandum NMFS‐OHC‐4, Silver Spring, MD. 60 p. Available online: http://deepseacoraldata.noaa.gov/library. STATE OF THE DEEP‐SEA CORAL AND SPONGE ECOSYSTEMS OF THE SOUTHEAST UNITED STATES Squat lobster perched on Lophelia pertusa colonies with a sponge in the background. Courtesy of NOAA/ USGS. 408 STATE OF THE DEEP‐SEA CORAL AND SPONGE ECOSYSTEMS OF THE SOUTHEAST UNITED STATES STATE OF THE DEEP- SEA CORAL AND Thomas F. Hourigan1*, SPONGE ECOSYSTEMS John Reed2, OF THE SOUTHEAST Shirley Pomponi2, UNITED STATES Steve W. Ross3, Andrew W. David4, and I. Introduction Stacey Harter4 The Southeast U.S. region stretches from the Straits of Florida north to Cape Hatteras, North Carolina, and encompasses the 1 NOAA Deep Sea Coral Southeast U.S. Continental Shelf large marine ecosystem (LME; Research and Technology Carolinian ecoregion) and associated deeper waters of the Blake Program, Office of Habitat Plateau, as well as a small portion of the Caribbean LME off the Conservation, Silver Florida Keys (eastern portion of the Floridian ecoregion). Within Spring, MD * Corresponding Author: U.S. waters, deep‐sea stony coral reefs reach their greatest [email protected] abundance and development in this region (Ross and Nizinski 2007). -
An Annotated Checklist of the Marine Macroinvertebrates of Alaska David T
NOAA Professional Paper NMFS 19 An annotated checklist of the marine macroinvertebrates of Alaska David T. Drumm • Katherine P. Maslenikov Robert Van Syoc • James W. Orr • Robert R. Lauth Duane E. Stevenson • Theodore W. Pietsch November 2016 U.S. Department of Commerce NOAA Professional Penny Pritzker Secretary of Commerce National Oceanic Papers NMFS and Atmospheric Administration Kathryn D. Sullivan Scientific Editor* Administrator Richard Langton National Marine National Marine Fisheries Service Fisheries Service Northeast Fisheries Science Center Maine Field Station Eileen Sobeck 17 Godfrey Drive, Suite 1 Assistant Administrator Orono, Maine 04473 for Fisheries Associate Editor Kathryn Dennis National Marine Fisheries Service Office of Science and Technology Economics and Social Analysis Division 1845 Wasp Blvd., Bldg. 178 Honolulu, Hawaii 96818 Managing Editor Shelley Arenas National Marine Fisheries Service Scientific Publications Office 7600 Sand Point Way NE Seattle, Washington 98115 Editorial Committee Ann C. Matarese National Marine Fisheries Service James W. Orr National Marine Fisheries Service The NOAA Professional Paper NMFS (ISSN 1931-4590) series is pub- lished by the Scientific Publications Of- *Bruce Mundy (PIFSC) was Scientific Editor during the fice, National Marine Fisheries Service, scientific editing and preparation of this report. NOAA, 7600 Sand Point Way NE, Seattle, WA 98115. The Secretary of Commerce has The NOAA Professional Paper NMFS series carries peer-reviewed, lengthy original determined that the publication of research reports, taxonomic keys, species synopses, flora and fauna studies, and data- this series is necessary in the transac- intensive reports on investigations in fishery science, engineering, and economics. tion of the public business required by law of this Department. -
Benthic Habitats and Biodiversity of Dampier and Montebello Marine
CSIRO OCEANS & ATMOSPHERE Benthic habitats and biodiversity of the Dampier and Montebello Australian Marine Parks Edited by: John Keesing, CSIRO Oceans and Atmosphere Research March 2019 ISBN 978-1-4863-1225-2 Print 978-1-4863-1226-9 On-line Contributors The following people contributed to this study. Affiliation is CSIRO unless otherwise stated. WAM = Western Australia Museum, MV = Museum of Victoria, DPIRD = Department of Primary Industries and Regional Development Study design and operational execution: John Keesing, Nick Mortimer, Stephen Newman (DPIRD), Roland Pitcher, Keith Sainsbury (SainsSolutions), Joanna Strzelecki, Corey Wakefield (DPIRD), John Wakeford (Fishing Untangled), Alan Williams Field work: Belinda Alvarez, Dion Boddington (DPIRD), Monika Bryce, Susan Cheers, Brett Chrisafulli (DPIRD), Frances Cooke, Frank Coman, Christopher Dowling (DPIRD), Gary Fry, Cristiano Giordani (Universidad de Antioquia, Medellín, Colombia), Alastair Graham, Mark Green, Qingxi Han (Ningbo University, China), John Keesing, Peter Karuso (Macquarie University), Matt Lansdell, Maylene Loo, Hector Lozano‐Montes, Huabin Mao (Chinese Academy of Sciences), Margaret Miller, Nick Mortimer, James McLaughlin, Amy Nau, Kate Naughton (MV), Tracee Nguyen, Camilla Novaglio, John Pogonoski, Keith Sainsbury (SainsSolutions), Craig Skepper (DPIRD), Joanna Strzelecki, Tonya Van Der Velde, Alan Williams Taxonomy and contributions to Chapter 4: Belinda Alvarez, Sharon Appleyard, Monika Bryce, Alastair Graham, Qingxi Han (Ningbo University, China), Glad Hansen (WAM), -
Svenzea Zeai, a Caribbean Reef Sponge with a Giant Larva, And
Svenzea zeai, a Caribbean Reef Sponge with a Giant Larva, and Scopalina ruetzleri: A Comparative Fine-Structural Approach to Classification (Demospongiae, Halichondrida, Dictyonellidae) Author(s): Klaus Rützler, Rob W. M. van Soest, Belinda Alvarez Source: Invertebrate Biology, Vol. 122, No. 3 (Summer, 2003), pp. 203-222 Published by: Blackwell Publishing on behalf of American Microscopical Society Stable URL: http://www.jstor.org/stable/3227199 Accessed: 27/10/2010 19:43 Your use of the JSTOR archive indicates your acceptance of JSTOR's Terms and Conditions of Use, available at http://www.jstor.org/page/info/about/policies/terms.jsp. JSTOR's Terms and Conditions of Use provides, in part, that unless you have obtained prior permission, you may not download an entire issue of a journal or multiple copies of articles, and you may use content in the JSTOR archive only for your personal, non-commercial use. Please contact the publisher regarding any further use of this work. Publisher contact information may be obtained at http://www.jstor.org/action/showPublisher?publisherCode=black. Each copy of any part of a JSTOR transmission must contain the same copyright notice that appears on the screen or printed page of such transmission. JSTOR is a not-for-profit service that helps scholars, researchers, and students discover, use, and build upon a wide range of content in a trusted digital archive. We use information technology and tools to increase productivity and facilitate new forms of scholarship. For more information about JSTOR, please contact [email protected]. American Microscopical Society and Blackwell Publishing are collaborating with JSTOR to digitize, preserve and extend access to Invertebrate Biology.