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Taxonomy and Diversity of the Sponge Fauna from Walters Shoal, a Shallow Seamount in the Western Indian Ocean Region
Taxonomy and diversity of the sponge fauna from Walters Shoal, a shallow seamount in the Western Indian Ocean region By Robyn Pauline Payne A thesis submitted in partial fulfilment of the requirements for the degree of Magister Scientiae in the Department of Biodiversity and Conservation Biology, University of the Western Cape. Supervisors: Dr Toufiek Samaai Prof. Mark J. Gibbons Dr Wayne K. Florence The financial assistance of the National Research Foundation (NRF) towards this research is hereby acknowledged. Opinions expressed and conclusions arrived at, are those of the author and are not necessarily to be attributed to the NRF. December 2015 Taxonomy and diversity of the sponge fauna from Walters Shoal, a shallow seamount in the Western Indian Ocean region Robyn Pauline Payne Keywords Indian Ocean Seamount Walters Shoal Sponges Taxonomy Systematics Diversity Biogeography ii Abstract Taxonomy and diversity of the sponge fauna from Walters Shoal, a shallow seamount in the Western Indian Ocean region R. P. Payne MSc Thesis, Department of Biodiversity and Conservation Biology, University of the Western Cape. Seamounts are poorly understood ubiquitous undersea features, with less than 4% sampled for scientific purposes globally. Consequently, the fauna associated with seamounts in the Indian Ocean remains largely unknown, with less than 300 species recorded. One such feature within this region is Walters Shoal, a shallow seamount located on the South Madagascar Ridge, which is situated approximately 400 nautical miles south of Madagascar and 600 nautical miles east of South Africa. Even though it penetrates the euphotic zone (summit is 15 m below the sea surface) and is protected by the Southern Indian Ocean Deep- Sea Fishers Association, there is a paucity of biodiversity and oceanographic data. -
A Soft Spot for Chemistry–Current Taxonomic and Evolutionary Implications of Sponge Secondary Metabolite Distribution
marine drugs Review A Soft Spot for Chemistry–Current Taxonomic and Evolutionary Implications of Sponge Secondary Metabolite Distribution Adrian Galitz 1 , Yoichi Nakao 2 , Peter J. Schupp 3,4 , Gert Wörheide 1,5,6 and Dirk Erpenbeck 1,5,* 1 Department of Earth and Environmental Sciences, Palaeontology & Geobiology, Ludwig-Maximilians-Universität München, 80333 Munich, Germany; [email protected] (A.G.); [email protected] (G.W.) 2 Graduate School of Advanced Science and Engineering, Waseda University, Shinjuku-ku, Tokyo 169-8555, Japan; [email protected] 3 Institute for Chemistry and Biology of the Marine Environment (ICBM), Carl-von-Ossietzky University Oldenburg, 26111 Wilhelmshaven, Germany; [email protected] 4 Helmholtz Institute for Functional Marine Biodiversity, University of Oldenburg (HIFMB), 26129 Oldenburg, Germany 5 GeoBio-Center, Ludwig-Maximilians-Universität München, 80333 Munich, Germany 6 SNSB-Bavarian State Collection of Palaeontology and Geology, 80333 Munich, Germany * Correspondence: [email protected] Abstract: Marine sponges are the most prolific marine sources for discovery of novel bioactive compounds. Sponge secondary metabolites are sought-after for their potential in pharmaceutical applications, and in the past, they were also used as taxonomic markers alongside the difficult and homoplasy-prone sponge morphology for species delineation (chemotaxonomy). The understanding Citation: Galitz, A.; Nakao, Y.; of phylogenetic distribution and distinctiveness of metabolites to sponge lineages is pivotal to reveal Schupp, P.J.; Wörheide, G.; pathways and evolution of compound production in sponges. This benefits the discovery rate and Erpenbeck, D. A Soft Spot for yield of bioprospecting for novel marine natural products by identifying lineages with high potential Chemistry–Current Taxonomic and Evolutionary Implications of Sponge of being new sources of valuable sponge compounds. -
Supplementary Materials: Patterns of Sponge Biodiversity in the Pilbara, Northwestern Australia
Diversity 2016, 8, 21; doi:10.3390/d8040021 S1 of S3 9 Supplementary Materials: Patterns of Sponge Biodiversity in the Pilbara, Northwestern Australia Jane Fromont, Muhammad Azmi Abdul Wahab, Oliver Gomez, Merrick Ekins, Monique Grol and John Norman Ashby Hooper 1. Materials and Methods 1.1. Collation of Sponge Occurrence Data Data of sponge occurrences were collated from databases of the Western Australian Museum (WAM) and Atlas of Living Australia (ALA) [1]. Pilbara sponge data on ALA had been captured in a northern Australian sponge report [2], but with the WAM data, provides a far more comprehensive dataset, in both geographic and taxonomic composition of sponges. Quality control procedures were undertaken to remove obvious duplicate records and those with insufficient or ambiguous species data. Due to differing naming conventions of OTUs by institutions contributing to the two databases and the lack of resources for physical comparison of all OTU specimens, a maximum error of ± 13.5% total species counts was determined for the dataset, to account for potentially unique (differently named OTUs are unique) or overlapping OTUs (differently named OTUs are the same) (157 potential instances identified out of 1164 total OTUs). The amalgamation of these two databases produced a complete occurrence dataset (presence/absence) of all currently described sponge species and OTUs from the region (see Table S1). The dataset follows the new taxonomic classification proposed by [3] and implemented by [4]. The latter source was used to confirm present validities and taxon authorities for known species names. The dataset consists of records identified as (1) described (Linnean) species, (2) records with “cf.” in front of species names which indicates the specimens have some characters of a described species but also differences, which require comparisons with type material, and (3) records as “operational taxonomy units” (OTUs) which are considered to be unique species although further assessments are required to establish their taxonomic status. -
General Introduction and Objectives 3
General introduction and objectives 3 General introduction: General body organization: The phylum Porifera is commonly referred to as sponges. The phylum, that comprises more than 6,000 species, is divided into three classes: Calcarea, Hexactinellida and Demospongiae. The latter class contains more than 85% of the living species. They are predominantly marine, with the notable exception of the family Spongillidae, an extant group of freshwater demosponges whose fossil record begins in the Cretaceous. Sponges are ubiquitous benthic creatures, found at all latitudes beneath the world's oceans, and from the intertidal to the deep-sea. Sponges are considered as the most basal phylum of metazoans, since most of their features appear to be primitive, and it is widely accepted that multicellular animals consist of a monophyletic group (Zrzavy et al. 1998). Poriferans appear to be diploblastic (Leys 2004; Maldonado 2004), although the two cellular sheets are difficult to homologise with those of the rest of metazoans. They are sessile animals, though it has been shown that some are able to move slowly (up to 4 mm per day) within aquaria (e.g., Bond and Harris 1988; Maldonado and Uriz 1999). They lack organs, possessing cells that develop great number of functions. The sponge body is lined by a pseudoepithelial layer of flat cells (exopinacocytes). Anatomically and physiologically, tissues of most sponges (but carnivorous sponges) are organized around an aquiferous system of excurrent and incurrent canals (Rupert and Barnes 1995). These canals are lined by a pseudoepithelial layer of flat cells (endopinacocytes).Water flows into the sponge body through multiple apertures (ostia) General introduction and objectives 4 to the incurrent canals which end in the choanocyte chambers (Fig. -
Collation and Validation of Museum Collection Databases Related to the Distribution of Marine Sponges in Northern Australia
1 COLLATION AND VALIDATION OF MUSEUM COLLECTION DATABASES RELATED TO THE DISTRIBUTION OF MARINE SPONGES IN NORTHERN AUSTRALIA. JOHN N.A. HOOPER & MERRICK EKINS 2 3 Collation and validation of museum collection databases related to the distribution of marine sponges in Northern Australia (Contract National Oceans Office C2004/020) John N.A. Hooper & Merrick Ekins Queensland Museum, PO Box 3300, South Brisbane, Queensland, 4101, Australia ([email protected], [email protected]) CONTENTS SUMMARY ......................................................................................................................... 6 1. INTRODUCTION ......................................................................................................... 10 1.1. General Introduction ..................................................................................... 10 1.2. Definitions of Australia’s marine bioregions ............................................... 12 2. MATERIALS & METHODS ....................................................................................... 16 2.1. Specimen point-data conversion ................................................................... 16 2.2. Geographic coverage and scales of analysis................................................. 18 2.3. Species distributions....................................................................................... 19 2.4. Modelled distribution datasets and historical sponge data ........................ 20 2.5. Identification of useful datasets and gaps in data, prioritised -
Biodiversity of Sponges (Phylum: Porifera) Off Tuticorin, India
Available online at: www.mbai.org.in doi:10.6024/jmbai.2020.62.2.2250-05 Biodiversity of sponges (Phylum: Porifera) off Tuticorin, India M. S. Varsha1,4 , L. Ranjith2, Molly Varghese1, K. K. Joshi1*, M. Sethulakshmi1, A. Reshma Prasad1, Thobias P. Antony1, M.S. Parvathy1, N. Jesuraj2, P. Muthukrishnan2, I. Ravindren2, A. Paulpondi2, K. P. Kanthan2, M. Karuppuswami2, Madhumita Biswas3 and A. Gopalakrishnan1 1ICAR-Central Marine Fisheries Research Institute, Kochi-682018, Kerala, India. 2Regional Station of ICAR-CMFRI, Tuticorin-628 001, Tamil Nadu, India. 3Ministry of Environment Forest and Climate Change, New Delhi-110003, India. 4Cochin University of Science and Technology, Kochi-682022, India. *Correspondence e-mail: [email protected] Received: 10 Nov 2020 Accepted: 18 Dec 2020 Published: 30 Dec 2020 Original Article Abstract the Vaippar - Tuticorin area. Tuticorin area is characterized by the presence of hard rocky bottom, soft muddy bottom, lagoon The present study deals with 18 new records of sponges found at and lakes. Thiruchendur to Tuticorin region of GOM-up to a Kayalpatnam area and a checklist of sponges reported off Tuticorin distance of 25 nautical miles from shore 8-10 m depth zone-is in the Gulf of Mannar. The new records are Aiolochoria crassa, characterized by a narrow belt of submerged dead coral blocks Axinella damicornis, Clathria (Clathria) prolifera, Clathrina sororcula, which serves as a very good substrate for sponges. Patches of Clathrina sinusarabica, Clathrina coriacea, Cliona delitrix, Colospongia coral ground “Paar” in the 10-23 m depth zone, available in auris, Crella incrustans, Crambe crambe, Hyattella pertusa, Plakortis an area of 10-16 nautical miles from land are pearl oyster beds simplex, Petrosia (Petrosia) ficiformis, Phorbas plumosus, (Mahadevan and Nayar, 1967; Nayar and Mahadevan, 1987) Spheciospongia vesparium, Spirastrella cunctatrix, Xestospongia which also forms a good habitat for sponges. -
Marine Conservation Society Sponges of The
MARINE CONSERVATION SOCIETY SPONGES OF THE BRITISH ISLES (“SPONGE V”) A Colour Guide and Working Document 1992 EDITION, reset with modifications, 2007 R. Graham Ackers David Moss Bernard E. Picton, Ulster Museum, Botanic Gardens, Belfast BT9 5AB. Shirley M.K. Stone Christine C. Morrow Copyright © 2007 Bernard E Picton. CAUTIONS THIS IS A WORKING DOCUMENT, AND THE INFORMATION CONTAINED HEREIN SHOULD BE CONSIDERED TO BE PROVISIONAL AND SUBJECT TO CORRECTION. MICROSCOPIC EXAMINATION IS ESSENTIAL BEFORE IDENTIFICATIONS CAN BE MADE WITH CONFIDENCE. CONTENTS Page INTRODUCTION ................................................................................................................... 1 1. History .............................................................................................................. 1 2. “Sponge IV” .................................................................................................... 1 3. The Species Sheets ......................................................................................... 2 4. Feedback Required ......................................................................................... 2 5. Roles of the Authors ...................................................................................... 3 6. Acknowledgements ........................................................................................ 3 GLOSSARY AND REFERENCE SECTION .................................................................... 5 1. Form ................................................................................................................ -
Indigenous Demosponge Spicules in a Late Devonian Stromatoporoid Basal Skeleton from the Frasnian of Belgium
Indigenous demosponge spicules in a Late Devonian stromatoporoid basal skeleton from the Frasnian of Belgium ANNE-CHRISTINE DA SILVA, STEPHEN KERSHAW, FRED ERIC BOULVAIN, BENOIT L. M. HUBERT, BRUNO MISTIAEN, ALAN REYNOLDS AND JOACHIM REITNER Da Silva A.-C., Kershaw S., Boulvain F., Hubert B.L.M., Mistiaen B., Reynolds A. & Reitner J. 2014: Indigenous demosponge spicules in a Late Devonian stromatoporoid basal skeleton from the Frasnian of Belgium. Lethaia, Vol. 47, pp. 365–375. This paper records the first example of a demosponge spicule framework in a single specimen of a Devonian stromatoporoid from the Frasnian of southern Belgium. The small sample (2.5 9 2 cm) is a component in a brecciated carbonate from a carbonate mound in La Boverie Quarry 30 km east of Dinant. Because of the small size of the sample, generic identification is not confirmed, but the stromatoporoid basal skeleton is similar to the genus Stromatopora. The spicules are arranged in the calcified skele- ton, but not in the gallery space, and are recrystallized as multi-crystalline calcite. The spicules fall into two size ranges: 10–20 lm diameter and 500–2000 lm long for the large ones and between 5–15 lm diameter and 50–100 lm length for the small ones. In tangential section, the spicules are circular, they have a simple structure, and no axial canal has been preserved. The large spicules are always monaxons, straight or slightly curved styles or strongyles. The spicules most closely resemble halichondrid/ axinellid demosponge spicules and are important rare evidence of the existence of spicules in Palaeozoic stromatoporoids, reinforcing the interpretation that stromatop- oroids were sponges. -
Final Cruise Report Florida
FINAL CRUISE REPORT FLORIDA SHELF-EDGE EXPEDITION (FLoSEE) DEEPWATER HORIZON OIL SPILL RESPONSE: SURVEY OF DEEPWATER AND MESOPHOTIC REEF ECOSYSTEMS IN THE EASTERN GULF OF MEXICO AND SOUTHEASTERN FLORIDA R/V SEWARD JOHNSON and JOHNSON-SEA-LINK SUBMERSIBLE July 9 – August 9, 2010 Conducted by: Harbor Branch Oceanographic Institute, Florida Atlantic University NOAA Cooperative Institute for Ocean Exploration, Research, and Technology Prepared by: John Reed, HBOI-FAU Stephanie Rogers, HBOI-FAU January 10, 2011 TABLE OF CONTENTS Page Executive Summary 2 Introduction 3 Areas of Operation 3 Study Sites 4 Itinerary 5 Scientific Personnel 6 Methods 7 Ship and Johnson-Sea-Link II Submersible 7 Johnson-Sea-Link Submersible Dive Survey Protocol 8 Objectives 9 Assessment of Deepwater Coral Reefs and Mesophotic Reefs: 10 Stress Responses of Corals and Other Marine Invertebrates Exposed to Oil and Chemical Dispersants 11 Quantitative Assessment of Zooplankton 11 Chemical Analysis of Sessile Benthic Taxa and Biomedical Resources 12 Education and Outreach 13 Results 14 Permits 14 Field Notes Database 14 ArcGIS 15 Collection Sites 15 Samples 15 Submersible Videotapes 16 Sample and Habitat Photographs 16 Sample Documetation 16 Appendices 1. Collection Site Summary 18 2. Collection Site Descriptions 23 3. Species List of Specimens Collected 43 4. Sample Documentation 63 1 EXECUTIVE SUMMARY This report finalizes the compilation of field notes, site notes, and sample data from the Florida Shelf-Edge Expedition (FLoSEE), July 9-August 9, 2010, that was conducted by Harbor Branch Oceanographic Institute, Florida Atlantic University (HBOI-FAU) as part of the Year 2 science plan for the Cooperative Institute for Ocean Exploration, Research, and Technology (CIOERT). -
Community Composition and Functional Prediction of Prokaryotes Associated with Sympatric Sponge Species of Southwestern Atlantic Coast C
www.nature.com/scientificreports OPEN Community composition and functional prediction of prokaryotes associated with sympatric sponge species of southwestern Atlantic coast C. C. P. Hardoim1*, A. C. M. Ramaglia1, G. Lôbo‑Hajdu2 & M. R. Custódio3 Prokaryotes contribute to the health of marine sponges. However, there is lack of data on the assembly rules of sponge‑associated prokaryotic communities, especially for those inhabiting biodiversity hotspots, such as ecoregions between tropical and warm temperate southwestern Atlantic waters. The sympatric species Aplysina caissara, Axinella corrugata, and Dragmacidon reticulatum were collected along with environmental samples from the north coast of São Paulo (Brazil). Overall, 64 prokaryotic phyla were detected; 51 were associated with sponge species, and the dominant were Proteobacteria, Bacteria (unclassifed), Cyanobacteria, Crenarchaeota, and Chlorofexi. Around 64% and 89% of the unclassifed operational taxonomical units (OTUs) associated with Brazilian sponge species showed a sequence similarity below 97%, with sequences in the Silva and NCBI Type Strain databases, respectively, indicating the presence of a large number of unidentifed taxa. The prokaryotic communities were species‑specifc, ranging 56%–80% of the OTUs and distinct from the environmental samples. Fifty‑four lineages were responsible for the diferences detected among the categories. Functional prediction demonstrated that Ap. caissara was enriched for energy metabolism and biosynthesis of secondary metabolites, whereas D. reticulatum was enhanced for metabolism of terpenoids and polyketides, as well as xenobiotics’ biodegradation and metabolism. This survey revealed a high level of novelty associated with Brazilian sponge species and that distinct members responsible from the diferences among Brazilian sponge species could be correlated to the predicted functions. -
Demosponge Distribution in the Eastern Mediterranean: a NW–SE Gradient
Helgol Mar Res (2005) 59: 237–251 DOI 10.1007/s10152-005-0224-8 ORIGINAL ARTICLE Eleni Voultsiadou Demosponge distribution in the eastern Mediterranean: a NW–SE gradient Received: 25 October 2004 / Accepted: 26 April 2005 / Published online: 22 June 2005 Ó Springer-Verlag and AWI 2005 Abstract The purpose of this paper was to investigate total number of species was an exponential negative patterns of demosponge distribution along gradients of function of depth. environmental conditions in the biogeographical subz- ones of the eastern Mediterranean (Aegean and Levan- Keywords Demosponges Æ Distribution Æ Faunal tine Sea). The Aegean Sea was divided into six major affinities Æ Mediterranean Sea Æ Aegean Sea Æ areas on the basis of its geomorphology and bathymetry. Levantine Sea Two areas of the Levantine Sea were additionally con- sidered. All available data on demosponge species numbers and abundance in each area, as well as their Introduction vertical and general geographical distribution were ta- ken from the literature. Multivariate analysis revealed a It is generally accepted that the Mediterranean Sea is NW–SE faunal gradient, showing an apparent dissimi- one of the world’s most oligotrophic seas. Conspicu- larity among the North Aegean, the South Aegean and ously, it harbors somewhat between 4% and 18% of the the Levantine Sea, which agrees with the differences in known world marine species, while representing only the geographical, physicochemical and biological char- 0.82% in surface area and 0.32% in volume of the world acteristics of the three areas. The majority of demo- ocean (Bianchi and Morri 2000). The eastern Mediter- sponge species has been recorded in the North Aegean, ranean, and especially the Levantine basin, is considered while the South Aegean is closer, in terms of demo- as the most oligotrophic Mediterranean region, having a sponge diversity, to the oligotrophic Levantine Sea. -
Diversity and Abundance of Intertidal Zone Sponges on Rocky Shores of Southern NSW, Australia: Patterns of Distribution, Environ
University of Wollongong Research Online University of Wollongong Thesis Collection 2017+ University of Wollongong Thesis Collections 2019 Diversity and abundance of intertidal zone sponges on rocky shores of southern NSW, Australia: patterns of distribution, environmental impacts and ecological interactions Caroline Cordonis Borges da Silva UnivFollowersity this of and Wollongong additional works at: https://ro.uow.edu.au/theses1 University of Wollongong Copyright Warning You may print or download ONE copy of this document for the purpose of your own research or study. The University does not authorise you to copy, communicate or otherwise make available electronically to any other person any copyright material contained on this site. You are reminded of the following: This work is copyright. Apart from any use permitted under the Copyright Act 1968, no part of this work may be reproduced by any process, nor may any other exclusive right be exercised, without the permission of the author. Copyright owners are entitled to take legal action against persons who infringe their copyright. A reproduction of material that is protected by copyright may be a copyright infringement. A court may impose penalties and award damages in relation to offences and infringements relating to copyright material. Higher penalties may apply, and higher damages may be awarded, for offences and infringements involving the conversion of material into digital or electronic form. Unless otherwise indicated, the views expressed in this thesis are those of the author and do not necessarily represent the views of the University of Wollongong. Recommended Citation Borges da Silva, Caroline Cordonis, Diversity and abundance of intertidal zone sponges on rocky shores of southern NSW, Australia: patterns of distribution, environmental impacts and ecological interactions, Doctor of Philosophy thesis, School of Earth, Atmospheric and Life Sciences, University of Wollongong, 2019.