Tpirt1 Is a Transition Metal Transporter in Polish Wheat (Triticum Polonicum L.) with a Broad Substrate Specifcity
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RNA-Seq and Itraq Reveal the Dwarfing Mechanism of Dwarf
Int. J. Biol. Sci. 2016, Vol. 12 653 Ivyspring International Publisher International Journal of Biological Sciences 2016; 12(6): 653-666. doi: 10.7150/ijbs.14577 Research Paper RNA-Seq and iTRAQ Reveal the Dwarfing Mechanism of Dwarf Polish Wheat (Triticum polonicum L.) Yi Wang1*, Xue Xiao1*, Xiaolu Wang1*, Jian Zeng2, Houyang Kang1, Xing Fan1, Lina Sha1, Haiqin Zhang1, Yonghong Zhou1 1. Triticeae Research Institute, Sichuan Agricultural University, Wenjiang 611130, Sichuan, China. 2. College of Resources, Sichuan Agricultural University, Wenjiang 611130, Sichuan, China. *The authors contributed equally to this work. Corresponding author: Yonghong Zhou, Fax: +86 028 826 503 50, E-mail address: [email protected]. © Ivyspring International Publisher. Reproduction is permitted for personal, noncommercial use, provided that the article is in whole, unmodified, and properly cited. See http://ivyspring.com/terms for terms and conditions. Received: 2015.12.02; Accepted: 2016.02.15; Published: 2016.04.08 Abstract The dwarfing mechanism of Rht-dp in dwarf Polish wheat (DPW) is unknown. Each internode of DPW was significantly shorter than it in high Polish wheat (HPW), and the dwarfism was insensitive to photoperiod, abscisic acid (ABA), gibberellin (GA), cytokinin (CK), auxin and brassinolide (BR). To understand the mechanism, three sets of transcripts, DPW, HPW, and a chimeric set (a combination of DPW and HPW), were constructed using RNA sequencing (RNA-Seq). Based on the chimeric transcripts, 2,446 proteins were identified using isobaric tags for relative and absolute quantification (iTRAQ). A total of 108 unigenes and 12 proteins were considered as dwarfism-related differentially expressed genes (DEGs) and differentially expressed proteins (DEPs), respectively. -
Comparative-Genetic Analysis – a Base for Wheat Taxonomy Revision
Czech J. Genet. Plant Breed., 41, 2005 (Special Issue) Comparative-Genetic Analysis – a Base for Wheat Taxonomy Revision N. P. G�������� Institute of Cytology and Genetics of Siberian Branch of Russian Acadeny of Sciences, Novosibirsk 630090, Russia, e-mail: [email protected] Abstract: Comparative-genetic analysis performed at the same time on cultivated wheat species and their wild relatives permits the definition of an introgressive hybridization strategy and reconstruction of the origin of the taxonomy important genes. The analysis also allows clarification of the origin of wheats and their differentiation into species, thereby proving a basis for a successful revision of Triticum L. genus system. Keywords: Triticum genus; comparative-genetic analysis; taxonomy The genus Triticum L. has a diphyletic origin (D��- Random amplified polymorphic DNA analysis ����� & K������� 1979). Its includes di- (2n = 14), was used to assess the phylogenetic relationships tetra- (2n = 28) and hexaploid (2n = 42) species, among these five morphological groups of hexa- with the phylogeny of most of them more or less ploid wheat. These results are in agreement with clarified (T�������� 1968). The main result of the those based on morphological classification (C�� wheat domestication process was the reconstruc- et al. 2000). As to di- and tetraploid wheat species, tion of rachis and glumes, which has converted no such genes controlling taxonomically important fragile spikes of the wild species into non-fragile, traits has been as yet identified and, accordingly naked grain cultivated species. These traits under- taxonomists usually use a species “radical’, in lie L������� (1753) classification of Triticum. His Vavilov’s terms, i.e. -
Evolutionary History of Triticum Petropavlovskyi Udacz. Et Migusch
Evolutionary History of Triticum petropavlovskyi Udacz. et Migusch. Inferred from the Sequences of the 3-Phosphoglycerate Kinase Gene Qian Chen1,2., Hou-Yang Kang1., Xing Fan1, Yi Wang1, Li-Na Sha1, Hai-Qin Zhang1, Mei-Yu Zhong1, Li-Li Xu1, Jian Zeng3, Rui-Wu Yang4, Li Zhang4, Chun-Bang Ding4, Yong-Hong Zhou1,2* 1 Triticeae Research Institute, Sichuan Agricultural University, Sichuan, People’s Republic of China, 2 Key Laboratory of Crop Genetic Resources and Improvement, Ministry of Education, Sichuan Agricultural University, Sichuan, People’s Republic of China, 3 College of Resources and Environment, Sichuan Agricultural University, Sichuan, People’s Republic of China, 4 College of Biology and Science, Sichuan Agricultural University, Sichuan, People’s Republic of China Abstract Single- and low-copy genes are less likely to be subject to concerted evolution. Thus, they are appropriate tools to study the origin and evolution of polyploidy plant taxa. The plastid 3-phosphoglycerate kinase gene (Pgk-1) sequences from 44 accessions of Triticum and Aegilops, representing diploid, tetraploid, and hexaploid wheats, were used to estimate the origin of Triticum petropavlovskyi. Our phylogenetic analysis was carried out on exon+intron, exon and intron sequences, using maximum likelihood, Bayesian inference and haplotype networking. We found the D genome sequences of Pgk-1 genes from T. petropavlovskyi are similar to the D genome orthologs in T. aestivum, while their relationship with Ae. tauschii is more distant. The A genome sequences of T. petropavlovskyi group with those of T. polonicum, but its Pgk-1 B genome sequences to some extent diverge from those of other species of Triticum. -
Increased and Ectopic Expression of Triticum Polonicum VRT-A2 Underlies Elongated Glumes and Grains in Hexaploid Wheat in a Dosage- Dependent Manner
bioRxiv preprint doi: https://doi.org/10.1101/2020.11.09.375154; this version posted November 9, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. Increased and ectopic expression of Triticum polonicum VRT-A2 underlies elongated glumes and grains in hexaploid wheat in a dosage- dependent manner Nikolai M. Adamski1, James Simmonds1, Jemima F. Brinton1,3, Anna E. Backhaus1, Yi Chen1, Mark Smedley1, Sadiye Hayta1, Tobin Florio1, Pamela Crane1, Peter Scott1,4, Alice Pieri1, Olyvia Hall1,5, J. Elaine Barclay1, Myles Clayton2, John H. Doonan2, Candida Nibau2, Cristobal Uauy1 1 John Innes Centre, Norwich Research Park, Norwich NR4 7UH, United Kingdom 2 The National Plant Phenomics Centre, Institute of Biological, Rural and Environmental Sciences (IBERS), Aberystwyth University, Gogerddan, Aberystwyth, SY23 3EE UK Present address: 3 Department of Natural Capital and Plant Health, Royal Botanic Gardens, Kew, Richmond, UK 4 Department of Crops & Soils, Scotland’s Rural College, Peter Wilson Building, King's Buildings, W Mains Rd, Edinburgh, EH9 3JG 5 School of Biological Sciences, University of Reading, Reading RG6 6AH, United Kingdom Corresponding author: [email protected] Short title: VRT-A2 encodes the wheat long glume P1 locus Keywords: wheat, expression, ectopic, SVP, MADS-box, dosage-dependent, glume, lemma, grain, intron 1 Email address: Nikolai M. Adamski [email protected] James Simmonds [email protected] Jemima F. Brinton [email protected] Anna E. -
Classification of Wheat Varieties Grown in the United States in 1949
■^"çfpp^ Classification of Wheat ^''^''^ LI 3 RAR' Varieties Grown in the United States in 1949 ^'^-.lifí!'. 'f3^'''^ , *,»;$.^"''' By B. B, BAYLES Principal Agronomist and J. ALLEN CLARK Senior Agronomist Field Crops Researeh Braneh Agricultural Research Service Technical Bulletin No. 1083 March 19S4 UNITED STATES DEPARTMENT OF AGRICULTURE, WASHINGTON, B.C. Technical Bulletin No. 1083 March 1954 Classification of Wheat Varieties Grown in the United States in 1949 By B. B. BAYLES Principal Agronomist and J. ALLEN CLARK Senior Agronomist Field Crops Research Branch Agricultural Research Service United States Department of Agriculture, Washington, D. C. For sale by the Superintendent of Documents, Washington 25, D. C. - Price 70 cents Technical Bulletin No. 1083 March 1954 Classification of Wheat Varieties Grown in the United States in 1949 ' By B. B. BAYLES, principal agronomist, and J. ALLEN CLARK, senior agronomist, Field Crops Research Branch, Agricultural Research Service CONTENTS Pa^e Page Need for classification 1 Classification of the genus Trit- Previous investigations 2 icum 35 Foreign classifications 2 Spelt.-_ 37 Domestic classifications 6 Emmer 37 Summary of previous classifica- Poulard wheat 37 tions 8 Polish wheat 40 Present investigations 9 Timopheevi 40 Classification nurseries 10 Einkorn 40 Description, history, and dis- Common wheat 40 tribution 12 Club wheat 146 Varietal nomenclature 13 Durum wheat 151 The wheat plant 14 Literature cited 158 Taxonomic characters 14 Index to varieties and synonyms.. 169 Other characters 34 NEED FOR CLASSIFICATION careful consideration by growers. The choice is partly dependent, The varieties of wheat grown in however, upon the determination the United States show a great of identity. -
Egyptian Wheat
Egyptian Wheat Salah Gowayed Department of Agrobiodiversity Institute of Crop Sciences University of Kassel Germany Egyptian Wheat Doctoral Dissertation Submitted for the degree of Doctor of Agricultural Sciences of the Institute of Crop Sciences of the University Kassel Presented by Salah Gowayed BSc, MSc, Egypt Witzenhausen, 3 December 2009 ii Die vorliegende Arbeit wurde vom Fachbereich Agrarwissenschaften der Universität Kassel als Dissertation zur Erlangung des akademischen Grades eines Doktors der Agrarwissenschaften (Dr. agr.) angenommen. Erster Gutachter: Prof. Dr. Karl Hammer Zweiter Gutachter: Prof. Dr. Christian Richter Tag der mündlichen Prüfung 3 December 2009 This work was approved by the Faculty of Agricultural Sciences, University of Kassel as a thesis to obtain the academic degree of Doctor of Agricultural Sciences (Dr. agr.). Referee: Prof. Dr. Karl Hammer Co-referee: Prof. Dr. Christian Richter Date of Examination: 3 December 2009 iii Table of Contents Content Pages List of Tables ««««««««««««««««««««««««««««««. vi List of Figures««««««««««««««««««««««««««««««. vii Dedication «««««««««««««««««««««««««««««««.. viii Acknowledgements «««««««««««««««««««««««««««« ix Summary x Zusammenfassung xi Chapter 1 Introduction …………………………………………………………………... 1 Problem Statement ««««««««««««««««««««««««......... 4 Aim and Scope ««««««««««««««««««««««««............... 5 Chapter 2 Egyptian Wheat: A Review………………………………………………….. 7 2.1 A Brief History of Wheat Classification «««««««««««««««««. 8 2.2.1 Domestication of Emmer Wheat «««««««««««««««««««..... 18 2.2.2 The Diversity Center of Domesticated Emmer Wheat ««««««««« 20 2.2.3 Origin and the Diversity Center of Ethiopian Wheat T. aethiopicum«««« 22 2.3 A Historical View of Agriculture and Egyptian Wheat «««««««««««... 24 2.3.1 Palaeoclimatic Conditions ««««««««..««««««««««««... 24 2.3.2 Egyptian History Phases««««««««««««««««««................. 25 2.3.2.1 Paleolithic or Old Stone Age««««««««««««««««««... 25 2.3.2.2 Neolithic Age 6000 BC (Neolithic Revolution)«««««««............... -
SHW-DPW) Wheat Accessions
Spanish Journal of Agricultural Research 14(4), e0713, 9 pages (2016) eISSN: 2171-9292 http://dx.doi.org/10.5424/sjar/2016144-8476 Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA) RESEARCH ARTICLE OPEN ACCESS Possible origin of Triticum petropavlovskyi based on cytological analyses of crosses between T. petropavlovskyi and tetraploid, hexaploid, and synthetic hexaploid (SHW-DPW) wheat accessions Qian Chen1, 2, Jun Song1, Wen-Ping Du1, Li-Yuan Xu1 and Gui-Rong Yu1 1 Institute of Biotechnology and Nuclear Technology, Sichuan Academy of Agricultural Sciences, Chengdu 610061, Sichuan, China. 2 Triticeae Research Institute, Sichuan Agricultural University, Wenjiang 611130, Sichuan, China Abstract Intraspecific hybridization between Triticum petropavlovskyi Udacz. et Migusch., synthetic hexaploid wheat (SHW-DPW), and tetraploid and hexaploid wheat, was performed to collect data on seed set, fertility of F1 hybrid, and meiotic pairing configuration, aiming to evaluate the possible origin of T. petropavlovskyi. Our data showed that (1) seed set of crosses T. petropavlovskyi × T. polonicum and T. petropavlovskyi × T. aestivum cv. Chinese Spring was significantly high; (2) fertility of hybrids T. petropavlovskyi × T. polonicum and T. petropavlovskyi × T. aestivum ssp. yunnanense was higher than that of the other hybrids; (3) fertility of F1 hybrids SHW-DPW × T. dicoccoides and SHW-DPW×T. aestivum ssp. tibetanum was significantly high; and (4) c-value of T. pe- tropavlovskyi × T. polonicum and T. petropavlovskyi × T. aestivum cv. Changning white wheat was also significantly high. The results indicate that the probable origin of T. petropavlovskyi is divergence from a natural cross between T. aestivum and T. polonicum, via either spontaneous introgression or breeding effort. -
Classification of Wheat Varieties Grown in the United States
TECHNICAL BULLETIN NO. 459 APRIL 1935 CLASSIFICATION OF WHEAT VARIETIES GROWN IN THE UNITED STATES J. ALLEN CLARK Senior Agronomist and B. B. BAYLES Associate Agronomist Division of Cereal Crops and Diseases Bureau of Plant Industry UNITED STATES DEPARTMENT OF AGRICULTURE, WASHINGTON, D. C. i_ u„ 4-UM. Qiincrintftndent of Documents. Washineton. D. C. Price 25 cents Technical Bulletin No. 459 April 1935 UNITED STATES DEPARTMENT OF AGRICULTURE WASHINGTON, D. C. CLASSIFICATION OF WHEAT VARIETIES GROWN IN THE UNITED STATES^ By J. ALLEN CLARK, senior agronomist^ and B. B. BAYLES, associate agronomist, Division of Cereal Crops and Diseases, Bureau of Plant Industry CONT ENTS Page Page Need for classification 1 Classification of the genus Triticum 37 Previous investigations._ _ _. 2 Key to the species or subspecies 38 Foreign classifications , 2 Common wheat.- 39 Domestic classifications 6 Club wheat ____ 128 Summary of previous classifications 8 Spelt .... 135 Present investigations 9 Poulard wheat 136 Classification nurseries 9 Durum wheat 137 Descriptions, histories, and distributions- 11 Emmer -.- 144 Varietal nomenclature. 13 Polish wheat 146 The wheat plant 15 Einkorn 147 Taxonomic characters _ 15 Literature cited 147 Other characters 36 Index to varieties and synonyms 158 NEED FOR CLASSIFICATION The varieties of wheat grown in the united States show a great diversity of type. This diversity is natural, as wheat is produced commercially in most of the 48 States of the Union under a wide range of environmental conditions. More than 200 distinct varieties are grown. Many of these are adapted only locally, while others are well adapted to a wide range of varying conditions. -
Stability Analysis of Immunogenic Gliadin Accumulation in Hard Red Spring Wheat (Triticum Aestivum L.) Stacy Lindblom-Dreis South Dakota State University
South Dakota State University Open PRAIRIE: Open Public Research Access Institutional Repository and Information Exchange Electronic Theses and Dissertations 2018 Stability Analysis of Immunogenic Gliadin Accumulation in Hard Red Spring Wheat (Triticum Aestivum L.) Stacy Lindblom-Dreis South Dakota State University Follow this and additional works at: https://openprairie.sdstate.edu/etd Part of the Agronomy and Crop Sciences Commons, and the Food Science Commons Recommended Citation Lindblom-Dreis, Stacy, "Stability Analysis of Immunogenic Gliadin Accumulation in Hard Red Spring Wheat (Triticum Aestivum L.)" (2018). Electronic Theses and Dissertations. 2430. https://openprairie.sdstate.edu/etd/2430 This Dissertation - Open Access is brought to you for free and open access by Open PRAIRIE: Open Public Research Access Institutional Repository and Information Exchange. It has been accepted for inclusion in Electronic Theses and Dissertations by an authorized administrator of Open PRAIRIE: Open Public Research Access Institutional Repository and Information Exchange. For more information, please contact [email protected]. STABILITY ANALYSIS OF IMMUNOGENIC GLIADIN ACCUMULATION IN HARD RED SPRING WHEAT (TRITICUM AESTIVUM L.) BY STACY LINDBLOM-DREIS A dissertation submitted in partial fulfillment of the requirements for the Doctor of Philosophy. Major in Plant Science South Dakota State University 2018 iii ACKNOWLEDGEMENTS Recognition and gratitude go to all the individuals and groups who supported this dissertation work: Dr. William Berzonsky, who gave me the first paper I read about celiac epitopes in gliadin and became a committee member; Dr. Karl Glover, who chose to be my advisor and gave me the opportunity to conduct this work; Dr. Padmanaban Krishnan, committee member and reference regarding wheat quality; Dr. -
Ancient Georgian Wheats
Emir. J. Food Agric. 2014. 26 (2): 192-202 doi: 10.9755/ejfa.v26i2.17522 http://www.ejfa.info/ REGULAR ARTICLE The ancient wheats of Georgiaand their traditional use in the southern part of the country M. Jorjadze*, T. Berishvili and E. Shatberashvili Biological Farming Association Elkana, 16, Gazapkhuli str., Tbilisi, Georgia Abstract Georgia represents a biodiversity hotspot for wheat with high levels of endemism. Many local variations of wheat are found in the country due to its variable climatic, edaphic, socio-economic and cultural landscape. Local variations of seven free-threshing and seven hulled wheat landraces and old varieties are found in the country, along with wheat utilization and the different traditional uses, are described in this paper. Despite the diversity and significance of Georgian wheats, their role in the wheat phylogenesis has not been thoroughly studied and the general public is not well informed on the subject. This article aims to promote Georgian wheat landraces and underline the necessity of carrying out a detailed systematic inventory of the wild and cultivated plants in Georgia order to get more information on the state of this national heritage and of the measures to be taken for its conservation. Key words: Ancient wheat, Traditional use, Georgia, South Caucasus, Samtskhe-Javakheti, Ethnography Introduction Georgia is one of the centres of the origin of The soft wheat variety name that is firstly wheat within the Near-East centre of origin of mentioned in Georgian literature is ‘Ipkli’; which is cultivated plants. Out of about 20 wheat species a winter bearded soft wheat species. -
Identification of Cereal Remains from Archaeological Sites 2Nd Edition 2006
Identification of cereal remains from archaeological sites 2nd edition 2006 Spikelet fork of the “new glume wheat” (Jones et al. 2000) Stefanie JACOMET and collaborators Archaeobotany Lab IPAS, Basel University English translation partly by James Greig CEREALS: CEREALIA Fam. Poaceae /Gramineae (Grasses) Systematics and Taxonomy All cereal species belong botanically (taxonomically) to the large family of the Gramineae (Poaceae). This is one of the largest Angiosperm families with >10 000 different species. In the following the systematics for some of the most imporant taxa is shown: class: Monocotyledoneae order: Poales familiy: Poaceae (= Gramineae) (Süssgräser) subfamily: Pooideae Tribus: Triticeae Subtribus: Triticinae genera: Triticum (Weizen, wheat); Aegilops; Hordeum (Gerste; barley); Elymus; Hordelymus; Agropyron; Secale (Roggen, rye) Note: Avena and the millets belong to other Tribus. The identification of prehistoric cereal remains assumes understanding of different subject areas in botany. These are mainly morphology and anatomy, but also phylogeny and evolution (and today, also genetics). Since most of the cereal species are treated as domesticated plants, many different forms such as subspecies, varieties, and forms appear inside the genus and species (see table below). In domesticates the taxonomical category of variety is also called “sort” (lat. cultivar, abbreviated: cv.). This refers to a variety which evolved through breeding. Cultivar is the lowest taxonomic rank in the domesticated plants. Occasionally, cultivars are also called races: e.g. landraces evolved through genetic isolation, under local environmental conditions whereas „high-breed-races“ were breed by strong selection of humans. Anyhow: The morphological delimitation of cultivars is difficult, sometimes even impossible. It needs great experience and very detailed morphological knowledge. -
Mapping and Identification of Flowering Time Genes in Bread Wheat (Triticum Aestivum L.)
Palacký University Olomouc Faculty of Science Department of Botany And Institute of Experimental Botany Centre of Region Haná for Biotechnological and Agricultural Research Olomouc Zuzana Ivaničová Mapping and identification of flowering time genes in bread wheat (Triticum aestivum L.) Ph. D. Thesis Supervisor: RNDr. Jan Šafář, Ph.D. Olomouc 2017 Acknowledgements: I would like to express great thanks to my supervisor, RNDr. Jan Šafář, Ph.D., for a professional guidance, inspirational ideas, patience and help. Further, I would like to thank to the head of the laboratory, prof. Ing. Jaroslav Doležel, DrSc., for the opportunity to work in the Centre of the Plant Structural and Functional Genomics and also to all the members of the team for a friendly and motivating atmosphere. My final thank goes to my family for their patience and support during the years of my studies. Declaration: I hereby declare that I elaborated this Ph.D. thesis independently under the supervision of RNDr. Jan Šafář, Ph.D. and using only information sources referred in the Reference chapter. ………………………. BIBLIOGRAPHIC IDENTIFICATION Author’s name: Mgr. Zuzana Ivaničová Title: Mapping and identification of flowering time genes in bread wheat (Triticum aestivum L.) Type of Thesis: Ph.D. thesis Department: Botany Supervisor: RNDr. Jan Šafář, Ph.D. The Year of Presentation: 2017 Abstract: Bread wheat (Triticum aestivum) is one of the most important crops. It is a staple food for 30% of population. Increasing of human population leads to necessity to achieve higher yield without enlarging of arable land. One way of achievement may rest in adaptation of flowering process to microenvironmental conditions.