Nectriaceous Fungi Collected from Forests in Taiwan
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Fungal Systematics: Is a New Age to Some Fungal Taxonomists, the Changes Were Seismic11
Nature Reviews Microbiology | AOP, published online 3 January 2013; doi:10.1038/nrmicro2942 PERSPECTIVES Nomenclature for Algae, Fungi, and Plants ESSAY (ICN). To many scientists, these may seem like overdue, common-sense measures, but Fungal systematics: is a new age to some fungal taxonomists, the changes were seismic11. of enlightenment at hand? In the long run, a unitary nomenclature system for pleomorphic fungi, along with the other changes, will promote effective David S. Hibbett and John W. Taylor communication. In the short term, however, Abstract | Fungal taxonomists pursue a seemingly impossible quest: to discover the abandonment of dual nomenclature will require mycologists to work together and give names to all of the world’s mushrooms, moulds and yeasts. Taxonomists to resolve the correct names for large num‑ have a reputation for being traditionalists, but as we outline here, the community bers of fungi, including many economically has recently embraced the modernization of its nomenclatural rules by discarding important pathogens and industrial organ‑ the requirement for Latin descriptions, endorsing electronic publication and isms. Here, we consider the opportunities ending the dual system of nomenclature, which used different names for the sexual and challenges posed by the repeal of dual nomenclature and the parallels and con‑ and asexual phases of pleomorphic species. The next, and more difficult, step will trasts between nomenclatural practices for be to develop community standards for sequence-based classification. fungi and prokaryotes. We also explore the options for fungal taxonomy based on Taxonomists create the language of bio‑ efforts to classify taxa that are discovered environmental sequences and ask whether diversity, enabling communication about through metagenomics5. -
Thyronectria Revisited and Re-Instated
Persoonia 33, 2014: 182–211 www.ingentaconnect.com/content/nhn/pimj RESEARCH ARTICLE http://dx.doi.org/10.3767/003158514X685211 Persistent hamathecial threads in the Nectriaceae, Hypocreales: Thyronectria revisited and re-instated W.M. Jaklitsch1, H. Voglmayr1,2 Key words Abstract Based on type studies and freshly collected material we here re-instate the genus Thyronectria (Nec- triaceae, Hypocreales). Species of this genus were recently for the most part classified in the genera Pleonectria act (Nectriaceae) or Mattirolia (Thyridiaceae), because Thyronectria and other genera had been identified as members Ascomycota of the Thyridiaceae due to the presence of paraphyses. Molecular phylogenies based on several markers (act, ITS, Hypocreales LSU rDNA, rpb1, rpb2, tef1, tub) revealed that the Nectriaceae contain members whose ascomata are characterised Mattirolia by long, more or less persistent, apical paraphyses. All of these belong to a single genus, Thyronectria, which thus Nectriaceae has representatives with hyaline, rosy, green or even dark brown and sometimes distoseptate ascospores. The new species type species of Thyronectria, T. rhodochlora, syn. T. patavina, syn. T. pyrrhochlora is re-described and illustrated. Pleonectria Within the Nectriaceae persistent, apical paraphyses are common in Thyronectria and rarely also occur in Nectria. pyrenomycetes The genus Mattirolia is revised and merged with Thyronectria and also Thyronectroidea is regarded as a synonym rpb1 of Thyronectria. The three new species T. asturiensis, T. caudata and T. obscura are added to the genus. Species rpb2 recently described in Pleonectria as well as some species of Mattirolia are combined in the genus, and a key to tef1 Thyronectria is provided. Five species are epitypified. -
Cylindrocladium Buxicola Nom. Cons. Prop.(Syn. Calonectria
I Promotors: Prof. dr. ir. Monica Höfte Laboratory of Phytopathology, Department of Crop Protection Faculty of Bioscience Engineering Ghent University Dr. ir. Kurt Heungens Institute for Agricultural and Fisheries Research (ILVO) Plant Sciences Unit - Crop Protection Dean: Prof. dr. ir. Guido Van Huylenbroeck Rector: Prof. dr. Anne De Paepe II Bjorn Gehesquière Cylindrocladium buxicola nom. cons. prop. (syn. Calonectria pseudonaviculata) on Buxus: molecular characterization, epidemiology, host resistance and fungicide control Thesis submitted in fulfillment of the requirements for the degree of Doctor (PhD) in Applied Biological Sciences III Dutch translation of the title: Cylindrocladium buxicola nom. cons. prop. (syn. Calonectria pseudonaviculata) in Buxus: moleculaire karakterisering, epidemiologie, waardplantresistentie en chemische bestrijding. Please refer to this work as follows: Gehesquière B. (2014). Cylindrocladium buxicola nom. cons. prop. (syn. Calonectria pseudonaviculata) on Buxus: molecular characterization, epidemiology, host resistance and fungicide control. Phd Thesis. Ghent University, Belgium The author and the promotors give authorisation to consult and to copy parts of this work for personal use only. Any other use is limited by Laws of Copyright. Permission to reproduce any material contained in this work should be obtained from the author. The promotors, The author, Prof. dr. ir. M. Höfte Dr. ir. K. Heungens ir. B. Gehesquière IV Een woordje van dank…. Dit dankwoord schrijven is ongetwijfeld het leukste onderdeel van deze thesis, en een mooie afsluiting van een interessante periode. Terugblikkend op de voorbije vier jaren kan ik enkel maar beamen dat een doctoraat zoveel meer is dan een wetenschappelijke uitdaging. Het is een levensreis in al zijn facetten, waarbij ik mezelf heb leren kennen in al mijn goede en slechte kantjes. -
Phylogeny and Taxonomy of the Genus Cylindrocladiella
Mycol Progress DOI 10.1007/s11557-011-0799-1 ORIGINAL ARTICLE Phylogeny and taxonomy of the genus Cylindrocladiella L. Lombard & R. G. Shivas & C. To-Anun & P. W. Crous Received: 10 June 2011 /Revised: 10 November 2011 /Accepted: 25 November 2011 # The Author(s) 2012. This article is published with open access at Springerlink.com Abstract The genus Cylindrocladiella was established to the 18 new Cylindrocladiella species described in this study accommodate Cylindrocladium-like fungi that have small, based on morphological and sequence data, several species cylindrical conidia and aseptate stipe extensions. Contemporary complexes remain unresolved. taxonomic studies of these fungi have relied on morphology and to a lesser extent on DNA sequence comparisons of the internal Keywords Cylindrocladiella . Cryptic species . Phylogeny. transcribed spacer regions (ITS 1, 2 and 5.8S gene) of the Taxonomy ribosomal RNA and the β-tubulin gene regions. In the present study, the identity of several Cylindrocladiella isolates collected over two decades was determined using morphology and phy- Introduction logenetic inference. A phylogeny constructed for these isolates employing the β-tubulin, histone H3, ITS, 28S large subunit and The genus Cylindrocladiella was established by Boesewinkel translation elongation factor 1-alpha gene regions resulted in the (1982) to accommodate five Cylindrocladium-like species identification of several cryptic species in the genus. In spite of producing small, cylindrical conidia. Cylindrocladiella, which is based on -
A Five-Gene Phylogeny of Pezizomycotina
Mycologia, 98(6), 2006, pp. 1018–1028. # 2006 by The Mycological Society of America, Lawrence, KS 66044-8897 A five-gene phylogeny of Pezizomycotina Joseph W. Spatafora1 Burkhard Bu¨del Gi-Ho Sung Alexandra Rauhut Desiree Johnson Department of Biology, University of Kaiserslautern, Cedar Hesse Kaiserslautern, Germany Benjamin O’Rourke David Hewitt Maryna Serdani Harvard University Herbaria, Harvard University, Robert Spotts Cambridge, Massachusetts 02138 Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon 97331 Wendy A. Untereiner Department of Botany, Brandon University, Brandon, Franc¸ois Lutzoni Manitoba, Canada Vale´rie Hofstetter Jolanta Miadlikowska Mariette S. Cole Vale´rie Reeb 2017 Thure Avenue, St Paul, Minnesota 55116 Ce´cile Gueidan Christoph Scheidegger Emily Fraker Swiss Federal Institute for Forest, Snow and Landscape Department of Biology, Duke University, Box 90338, Research, WSL Zu¨ rcherstr. 111CH-8903 Birmensdorf, Durham, North Carolina 27708 Switzerland Thorsten Lumbsch Matthias Schultz Robert Lu¨cking Biozentrum Klein Flottbek und Botanischer Garten der Imke Schmitt Universita¨t Hamburg, Systematik der Pflanzen Ohnhorststr. 18, D-22609 Hamburg, Germany Kentaro Hosaka Department of Botany, Field Museum of Natural Harrie Sipman History, Chicago, Illinois 60605 Botanischer Garten und Botanisches Museum Berlin- Dahlem, Freie Universita¨t Berlin, Ko¨nigin-Luise-Straße Andre´ Aptroot 6-8, D-14195 Berlin, Germany ABL Herbarium, G.V.D. Veenstraat 107, NL-3762 XK Soest, The Netherlands Conrad L. Schoch Department of Botany and Plant Pathology, Oregon Claude Roux State University, Corvallis, Oregon 97331 Chemin des Vignes vieilles, FR - 84120 MIRABEAU, France Andrew N. Miller Abstract: Pezizomycotina is the largest subphylum of Illinois Natural History Survey, Center for Biodiversity, Ascomycota and includes the vast majority of filamen- Champaign, Illinois 61820 tous, ascoma-producing species. -
An Ex-Type Culture Cannot Always Tell the Ultimate Truth
An ex-type culture cannot always tell the CORRESPONDENCE ultimate truth This note is prompted by the case of the isolates accurately matching the description Domsch KH, Gams W, Anderson T-H (1980) generic name Ochroconis, a rather common of this species. The dried type culture Compendium of Soil Fungi. London: Academic genus of saprotrophic soil hyphomycetes, still shows the correct fungus and DNA Press. some of which grow occasionally on sequences of the other isolates representing Ellis MB (1971) Dematiaceous Hyphomycetes. Kew: humans and fish. Von Arx, in the 1970s, this species can be taken as correct. Commonwealth Mycological Institute. being mainly interested in producing Unfortunate consequences arise when Ellis MB (1976) More Dematiaceous Hyphomycetes. keys to identify fungal genera in culture a wrongly identified fungus is designated Kew: Commonwealth Mycological Institute. morphologically, did not believe that as an epitype of a species, as happened with Gams W (1971) Cephalosporium-artige Scolecobasidium terreum E.V. Abbott 1927 Hypocrea farinosa Berk. & Broome 1851 Schimmelpilze (Hyphomycetes). Stuttgart: G. with Y-shaped yellowish conidia, and for which Overton et al. (2000) designated Fischer. other species of this genus with darker, an epitype without studying the extant Gräfenhan T, Schroers H-J, Nirenberg HI, Seifert unbranched conidia were congeneric, holotype. It was left to Jaklitschet al. (2008) KA (2011) An overview of the taxonomy, as proposed by Barron & Busch (1962). to correct the situation and to resurrect the phylogeny, and typification of nectriaceous Therefore, he let his young staff member G. generic name Protocrea Petch 1937 for this fungi in Cosmospora, Acremonium, Fusarium, Sybren de Hoog describe a separate genus, fungus and its relatives, while Overton et al.’s Stilbella, and Volutella. -
Ascomycota, Hypocreales, Clavicipitaceae), and Their Aschersonia-Like Anamorphs in the Neotropics
available online at www.studiesinmycology.org STUDIE S IN MYCOLOGY 60: 1–66. 2008. doi:10.3114/sim.2008.60.01 A monograph of the entomopathogenic genera Hypocrella, Moelleriella, and Samuelsia gen. nov. (Ascomycota, Hypocreales, Clavicipitaceae), and their aschersonia-like anamorphs in the Neotropics P. Chaverri1, M. Liu2 and K.T. Hodge3 1Department of Biology, Howard University, 415 College Street NW, Washington D.C. 20059, U.S.A.; 2Agriculture and Agri-Food Canada/Agriculture et Agroalimentaire Canada, Biodiversity (Mycology and Botany), 960 Carling Avenue, Ottawa, Ontario K1A 0C6, Canada; 3Department of Plant Pathology, Cornell University, 334 Plant Science Building, Ithaca, New York 14853, U.S.A. *Correspondence: Priscila Chaverri [email protected] Abstract: The present taxonomic revision deals with Neotropical species of three entomopathogenic genera that were once included in Hypocrella s. l.: Hypocrella s. str. (anamorph Aschersonia), Moelleriella (anamorph aschersonia-like), and Samuelsia gen. nov (anamorph aschersonia-like). Species of Hypocrella, Moelleriella, and Samuelsia are pathogens of scale insects (Coccidae and Lecaniidae, Homoptera) and whiteflies (Aleyrodidae, Homoptera) and are common in tropical regions. Phylogenetic analyses of DNA sequences from nuclear ribosomal large subunit (28S), translation elongation factor 1-α (TEF 1-α), and RNA polymerase II subunit 1 (RPB1) and analyses of multiple morphological characters demonstrate that the three segregated genera can be distinguished by the disarticulation of the ascospores and shape and size of conidia. Moelleriella has filiform multi-septate ascospores that disarticulate at the septa within the ascus and aschersonia-like anamorphs with fusoid conidia. Hypocrella s. str. has filiform to long- fusiform ascospores that do not disarticulate and Aschersonia s. -
Assessment of Forest Pests and Diseases in Native Boxwood Forests of Georgia Final Report
Assessment of Forest Pests and Diseases in Native Boxwood Forests of Georgia Final report Dr. Iryna Matsiakh Forestry Department, Ukrainian National Forestry University (Lviv) Tbilisi 2016 TABLE OF CONTENT LIST OF TABLES AND FIGURES .................................................................................................................................. 2 ABBREVIATIONS AND ACRONYMS ........................................................................................................................... 5 EXECUTIVE SUMMARY .................................................................................................................................................. 6 INTRODUCTION .............................................................................................................................................................. 10 1. BACKGROUND INFORMATION ............................................................................................................................ 11 1.1. Biodiversity of Georgia ........................................................................................................................................ 11 1.2. Forest Ecosystems .................................................................................................................................................. 12 1.3. Boxwood Forests in Forests Habitat Classification ................................................................................. 14 1.4. Georgian Forests Habitat in the Context of Climate Change -
Novel Species of Cylindrocarpon (Neonectria) and Campylocarpon Gen
STUDIES IN MYCOLOGY 50: 431–455. 2004. Novel species of Cylindrocarpon (Neonectria) and Campylocarpon gen. nov. associated with black foot disease of grapevines (Vitis spp.) Francois Halleen1, Hans-Josef Schroers2,3*, Johannes Z. Groenewald3 and Pedro W. Crous3 1ARC Infruitec-Nietvoorbij (The Fruit, Vine and Wine Institute of the Agricultural Research Council), P. Bag X5026, Stellen- bosch, 7599, and the Department of Plant Pathology, University of Stellenbosch, P. Bag X1, Matieland 7602, South Africa; 2Agricultural Institute of Slovenia, Hacquetova 17, p.p. 2553, 1001 Ljubljana, Slovenia; 3Centraalbureau voor Schimmelcul- tures, P.O. Box 85167, NL-3508 AD Utrecht, The Netherlands *Correspondence: Hans-Josef Schroers, [email protected] Abstract: Four Cylindrocarpon or Cylindrocarpon-like taxa isolated from asymptomatic or diseased Vitis vinifera plants in nurseries and vineyards of South Africa, New Zealand, Australia, and France were morphologically and phylogenetically compared with other Neonectria/Cylindrocarpon taxa. Sequences of the partial nuclear large subunit ribosomal DNA (LSU rDNA), internal transcribed spacers 1 and 2 of the rDNA including the 5.8S rDNA gene (ITS), and partial ȕ-tubulin gene introns and exons were used for phylogenetic inference. Neonectria/Cylindrocarpon species clustered in mainly three groups. One monophyletic group consisted of three subclades comprising (i) members of the Neonectria radicicola/Cylindrocarpon destructans complex, which contained strains isolated from grapevines in South Africa, New Zealand, and France; (ii) a Neonectria/Cylindrocarpon species isolated from grapevines in South Africa, Canada (Ontario), Australia (Tasmania), and New Zealand, described here as Cylindrocarpon macrodidymum; and (iii) an assemblage of species closely related to strains identified as Cylindrocarpon cylindroides, the type species of Cylindrocarpon. -
Figure 84.-A Target-Shaped Nectria Canker on a Sugar Maple Stem
Figure 84.-A target-shaped Nectria canker on a sugar Figure 85.-Numerous pink-orange young fruNng bodies of maple stem. the coral spot fungus developing on dead bark of Norway maple. Coral spot canker. Coral spot canker (Nectria cinnabarina) is common on sugar maple and other hardwood trees. It usu- fruiting bodies also appear among the black forms produced ally attacks only dead Wigs and branches but also can kill earlier. The red structures are the sexual stage of the branches and stems of young trees weakened by freezing. fungus. Both Sages often are found on the same twig. drought, or mechanical injury. It is common and highly Spores of both can infect fresh wounds. visible. Coral spot canker is considered an "annual" dii.The The fungus infects dead buds and small branch wounds host tree usually regains enough vigor during the growing caused by hail, frost, or insect feeding. It is especially impor- season to block the later invasion of new tissue. Maintaining tant on trees stressed by drought or other environmental fac- gwd stand vigor should suffice as an effective control in tors. The degree of stress to the host determines how rapidly forest stands. the fungus develops. It kills the young bark, which soon darkens and produces a flattened or depressed canker on Steganosponurn ovafum is another common fungus of dying the branch around the infection. The fungus develops mostly and dead maple branches (Fig. 86). It produces black hriing when the tree is dormant and produces its distinctive fruiting structures on branches of trees stressed previously, bodies in late spring or early summer. -
(Hypocreales) Proposed for Acceptance Or Rejection
IMA FUNGUS · VOLUME 4 · no 1: 41–51 doi:10.5598/imafungus.2013.04.01.05 Genera in Bionectriaceae, Hypocreaceae, and Nectriaceae (Hypocreales) ARTICLE proposed for acceptance or rejection Amy Y. Rossman1, Keith A. Seifert2, Gary J. Samuels3, Andrew M. Minnis4, Hans-Josef Schroers5, Lorenzo Lombard6, Pedro W. Crous6, Kadri Põldmaa7, Paul F. Cannon8, Richard C. Summerbell9, David M. Geiser10, Wen-ying Zhuang11, Yuuri Hirooka12, Cesar Herrera13, Catalina Salgado-Salazar13, and Priscila Chaverri13 1Systematic Mycology & Microbiology Laboratory, USDA-ARS, Beltsville, Maryland 20705, USA; corresponding author e-mail: Amy.Rossman@ ars.usda.gov 2Biodiversity (Mycology), Eastern Cereal and Oilseed Research Centre, Agriculture & Agri-Food Canada, Ottawa, ON K1A 0C6, Canada 3321 Hedgehog Mt. Rd., Deering, NH 03244, USA 4Center for Forest Mycology Research, Northern Research Station, USDA-U.S. Forest Service, One Gifford Pincheot Dr., Madison, WI 53726, USA 5Agricultural Institute of Slovenia, Hacquetova 17, 1000 Ljubljana, Slovenia 6CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands 7Institute of Ecology and Earth Sciences and Natural History Museum, University of Tartu, Vanemuise 46, 51014 Tartu, Estonia 8Jodrell Laboratory, Royal Botanic Gardens, Kew, Surrey TW9 3AB, UK 9Sporometrics, Inc., 219 Dufferin Street, Suite 20C, Toronto, Ontario, Canada M6K 1Y9 10Department of Plant Pathology and Environmental Microbiology, 121 Buckhout Laboratory, The Pennsylvania State University, University Park, PA 16802 USA 11State -
Delimitation of Neonectria and Cylindrocarpon (Nectriaceae, Hypocreales, Ascomycota) and Related Genera with Cylindrocarpon-Like Anamorphs
available online at www.studiesinmycology.org StudieS in Mycology 68: 57–78. 2011. doi:10.3114/sim.2011.68.03 Delimitation of Neonectria and Cylindrocarpon (Nectriaceae, Hypocreales, Ascomycota) and related genera with Cylindrocarpon-like anamorphs P. Chaverri1*, C. Salgado1, Y. Hirooka1, 2, A.Y. Rossman2 and G.J. Samuels2 1University of Maryland, Department of Plant Sciences and Landscape Architecture, 2112 Plant Sciences Building, College Park, Maryland 20742, USA; 2United States Department of Agriculture, Agriculture Research Service, Systematic Mycology and Microbiology Laboratory, Rm. 240, B-010A, 10300 Beltsville Avenue, Beltsville, Maryland 20705, USA *Correspondence: Priscila Chaverri, [email protected] Abstract: Neonectria is a cosmopolitan genus and it is, in part, defined by its link to the anamorph genusCylindrocarpon . Neonectria has been divided into informal groups on the basis of combined morphology of anamorph and teleomorph. Previously, Cylindrocarpon was divided into four groups defined by presence or absence of microconidia and chlamydospores. Molecular phylogenetic analyses have indicated that Neonectria sensu stricto and Cylindrocarpon sensu stricto are phylogenetically congeneric. In addition, morphological and molecular data accumulated over several years have indicated that Neonectria sensu lato and Cylindrocarpon sensu lato do not form a monophyletic group and that the respective informal groups may represent distinct genera. In the present work, a multilocus analysis (act, ITS, LSU, rpb1, tef1, tub) was applied to representatives of the informal groups to determine their level of phylogenetic support as a first step towards taxonomic revision of Neonectria sensu lato. Results show five distinct highly supported clades that correspond to some extent with the informal Neonectria and Cylindrocarpon groups that are here recognised as genera: (1) N.