AR TICLE Genera in Bionectriaceae, Hypocreaceae, and Nectriaceae
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Development and Evaluation of Rrna Targeted in Situ Probes and Phylogenetic Relationships of Freshwater Fungi
Development and evaluation of rRNA targeted in situ probes and phylogenetic relationships of freshwater fungi vorgelegt von Diplom-Biologin Christiane Baschien aus Berlin Von der Fakultät III - Prozesswissenschaften der Technischen Universität Berlin zur Erlangung des akademischen Grades Doktorin der Naturwissenschaften - Dr. rer. nat. - genehmigte Dissertation Promotionsausschuss: Vorsitzender: Prof. Dr. sc. techn. Lutz-Günter Fleischer Berichter: Prof. Dr. rer. nat. Ulrich Szewzyk Berichter: Prof. Dr. rer. nat. Felix Bärlocher Berichter: Dr. habil. Werner Manz Tag der wissenschaftlichen Aussprache: 19.05.2003 Berlin 2003 D83 Table of contents INTRODUCTION ..................................................................................................................................... 1 MATERIAL AND METHODS .................................................................................................................. 8 1. Used organisms ............................................................................................................................. 8 2. Media, culture conditions, maintenance of cultures and harvest procedure.................................. 9 2.1. Culture media........................................................................................................................... 9 2.2. Culture conditions .................................................................................................................. 10 2.3. Maintenance of cultures.........................................................................................................10 -
Taxonomy and Phylogeny of Gliocladium Analysed from Nuclear Large Subunit Ribosomal DNA Sequences
Mycol. Res. 98 (6):625-634 (1994) Printed in Great Britain 625 Taxonomy and phylogeny of Gliocladium analysed from nuclear large subunit ribosomal DNA sequences STEPHEN A. REHNER AND GARY J. SAMUELS USDA, ARS, Systematic Botany and Mycology Laboratory Room 304, Building OIIA, Beltsville, BARC-W, Maryland 20705, U.SA. The phylogenetic distribution of Gliocladium within the Hypocreales was investigated by parsimony analysis of partial sequences from the nuclear large subunit ribosomal DNA (28s rDNA). Two principal monophyletic groups were resolved that included species with anarnorphs classified in Gliocladium. The first clade includes elements of the genera Hypocrea (H. gelatinosa, H. lutea) plus Trichodema, Hypocrea pallida, Hypomyces and Sphaerostilbella, which are each shown to be monophyletic but whose sister group relationships are unresolved with the present data set. Gliocladium anamorphs in this clade include Gliocladium penicillioides, the type species of Gliocladium and anamorph of Sphaerostilbella aureonitens, and Trichodema virens (= G. virens) which is a member of the clade containing Hypocrea and Trichodema. A second clade, consisting of species with pallid perithecia, is grouped around Nectria ochroleuca, whose anamorph is Gliocladium roseum. Other species in this clade having Gliocladium-like anamorphs are Nectriopsis sporangiicola and Roumeguericlla rufula. The species of Nectria represented in this study are polyphyletic and resolved as four separate groups: (1)N. cinnabarina the type species, (2) three species with Fusarium anamorphs including N. albosuccinea, N. haematococca and Gibberella fujikoroi, (3) N. purtonii a species whose anamorph is classified in Fwarium sect. Eupionnofes, and (4) N. ochroleuca, which is representative of species with pallid perithecia. The results indicate that Gliocladium is polyphyletic and that G. -
<I>Gliocephalotrichum Simplex</I>
ISSN (print) 0093-4666 © 2010. Mycotaxon, Ltd. ISSN (online) 2154-8889 MYCOTAXON doi: 10.5248/114.161 Volume 114, pp. 163–169 October–December 2010 A new record of Gliocephalotrichum simplex from India Sanjay K. Singh, Lal Sahab Yadav, Paras N. Singh, Rahul Sharma & Kunhiraman C. Rajeshkumar singhsksingh@rediffmail.com National Facility for Culture Collection of Fungi, MACS’ Agharkar Research Institute G. G. Agarkar Road, Pune - 411 004, India Abstract — During a survey of interesting and rare fungi infecting economically important plants in the forests of the Western Ghats in India, an uncommon fungal species was isolated from fruits of Terminalia chebula. The fungus has distinctive morphological features such as a whorl of sterile arms subtending penicillate branches bearing yellowish masses of elongated to ellipsoidal conidia. Based on morphological characters and a comparison of sequences of the internal transcribed spacer region of rDNA (ITS1-5.8S-ITS2), the fungus was determined to be Gliocephalotrichum simplex, a species not previously known from India. Key words — anamorph, fungal diversity, Hypocreales, ITS sequence Introduction India is a tropical country that harbors considerable fungal biodiversity (Bilgrami et al. 1991, Jamaluddin et al. 2004). As part of our ongoing effort to discover and preserve fungi, we are making regular surveys and isolating rare and unusual fungi. During 2008–09 partially degraded fruits of Terminalia chebula were collected from the forest floor in Western Ghats in Maharashtra state, India. From these fruits a fungus was isolated and identified as Gliocephalotrichum simplex. This fungus has never been recorded from India. The present communication describes this fungus from India on artificial media isolated from fruits of T. -
Illuminating Type Collections of Nectriaceous Fungi in Saccardo's
Persoonia 45, 2020: 221–249 ISSN (Online) 1878-9080 www.ingentaconnect.com/content/nhn/pimj RESEARCH ARTICLE https://doi.org/10.3767/persoonia.2020.45.09 Illuminating type collections of nectriaceous fungi in Saccardo’s fungarium N. Forin1, A. Vizzini 2,3,*, S. Nigris1,4, E. Ercole2, S. Voyron2,3, M. Girlanda2,3, B. Baldan1,4,* Key words Abstract Specimens of Nectria spp. and Nectriella rufofusca were obtained from the fungarium of Pier Andrea Saccardo, and investigated via a morphological and molecular approach based on MiSeq technology. ITS1 and ancient DNA ITS2 sequences were successfully obtained from 24 specimens identified as ‘Nectria’ sensu Saccardo (including Ascomycota 20 types) and from the type specimen of Nectriella rufofusca. For Nectria ambigua, N. radians and N. tjibodensis Hypocreales only the ITS1 sequence was recovered. On the basis of morphological and molecular analyses new nomenclatural Illumina combinations for Nectria albofimbriata, N. ambigua, N. ambigua var. pallens, N. granuligera, N. peziza subsp. ribosomal sequences reyesiana, N. radians, N. squamuligera, N. tjibodensis and new synonymies for N. congesta, N. flageoletiana, Sordariomycetes N. phyllostachydis, N. sordescens and N. tjibodensis var. crebrior are proposed. Furthermore, the current classifi- cation is confirmed for Nectria coronata, N. cyanostoma, N. dolichospora, N. illudens, N. leucotricha, N. mantuana, N. raripila and Nectriella rufofusca. This is the first time that these more than 100-yr-old specimens are subjected to molecular analysis, thereby providing important new DNA sequence data authentic for these names. Article info Received: 25 June 2020; Accepted: 21 September 2020; Published: 23 November 2020. INTRODUCTION to orange or brown perithecia which do not change colour in 3 % potassium hydroxide (KOH) or 100 % lactic acid (LA) Nectria, typified with N. -
The Holomorph of Parasarcopodium (Stachybotryaceae), Introducing P
Phytotaxa 266 (4): 250–260 ISSN 1179-3155 (print edition) http://www.mapress.com/j/pt/ PHYTOTAXA Copyright © 2016 Magnolia Press Article ISSN 1179-3163 (online edition) http://dx.doi.org/10.11646/phytotaxa.266.4.2 The holomorph of Parasarcopodium (Stachybotryaceae), introducing P. pandanicola sp. nov. on Pandanus sp. SAOWALUCK TIBPROMMA1,2,3,4,5, SARANYAPHAT BOONMEE2, NALIN N. WIJAYAWARDENE2,3,5, SAJEEWA S.N. MAHARACHCHIKUMBURA6, ERIC H. C. McKENZIE7, ALI H. BAHKALI8, E.B. GARETH JONES8, KEVIN D. HYDE1,2,3,4,5,8 & ITTHAYAKORN PROMPUTTHA9,* 1Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Science, Kun- ming 650201, Yunnan, People’s Republic of China 2Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100, Thailand 3School of Science, Mae Fah Luang University, Chiang Rai, 57100, Thailand 4World Agroforestry Centre, East and Central Asia, Kunming 650201, Yunnan, P. R. China 5Mushroom Research Foundation, 128 M.3 Ban Pa Deng T. Pa Pae, A. Mae Taeng, Chiang Mai 50150, Thailand 6Department of Crop Sciences, College of Agricultural and Marine Sciences Sultan Qaboos University, P.O. Box 34, AlKhoud 123, Oman 7Manaaki Whenua Landcare Research, Private Bag 92170, Auckland, New Zealand 8Botany and Microbiology Department, College of Science, King Saud University, Riyadh, KSA 11442, Saudi Arabia 9Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai, 50200, Thailand *Corresponding author: e-mail: [email protected] Abstract Collections of microfungi on Pandanus species (Pandanaceae) in Krabi, Thailand resulted in the discovery of a new species in the genus Parasarcopodium, producing both its sexual and asexual morphs. -
Biodiversity of Trichoderma in Neotropics
13 Biodiversity of Trichoderma in Neotropics Lilliana Hoyos-Carvajal1 and John Bissett2 1Universidad Nacional de Colombia, Sede Bogotá 2Agriculture and Agri-Food Canada, Eastern Cereal and Oilseed Research Centre, Ottawa 1Colombia 2Canada 1. Introduction Trichoderma species frequently are predominant over wide geographic regions in all climatic zones, where they are significant decomposers of woody and herbaceous materials. They are characterized by rapid growth, an ability to assimilate a diverse array of substrates, and by their production of an range of antimicrobials. Strains have been exploited for production of enzymes and antibiotics, bioremediation of xenobiotic substances, and as biological control agents against plant pathogenic fungi and nematodes. The main use of Trichoderma in global trade is derived from its high production of enzymes. Trichoderma reesei (teleomorph: Hypocrea jecorina) is the most widely employed cellulolytic organism in the world, although high levels of cellulase production are also seen in other species of this genus (Baig et al., 2003, Watanabe et al., 2006). Worldwide sales of enzymes had reached the figure of $ 1.6 billion by the year 2000 (Demain 2000, cited by Karmakar and Ray, 2011), with an annual growth of 6.5 to 10% not including pharmaceutical enzymes (Stagehands, 2008). Of these, cellulases comprise approximately 20% of the enzymes marketed worldwide (Tramoy et al., 2009). Cellulases of microbial origin are used to process food and animal feed, biofuel production, baking, textiles, detergents, paper pulp, agriculture and research areas at all levels (Karmakar and Ray, 2011). Most cellulases are derived from Trichoderma (section Longibrachiatum in particular) and Aspergillus (Begum et al., 2009). -
Metabolites from Nematophagous Fungi and Nematicidal Natural Products from Fungi As an Alternative for Biological Control
Appl Microbiol Biotechnol (2016) 100:3799–3812 DOI 10.1007/s00253-015-7233-6 MINI-REVIEW Metabolites from nematophagous fungi and nematicidal natural products from fungi as an alternative for biological control. Part I: metabolites from nematophagous ascomycetes Thomas Degenkolb1 & Andreas Vilcinskas1,2 Received: 4 October 2015 /Revised: 29 November 2015 /Accepted: 2 December 2015 /Published online: 29 December 2015 # The Author(s) 2015. This article is published with open access at Springerlink.com Abstract Plant-parasitic nematodes are estimated to cause Keywords Phytoparasitic nematodes . Nematicides . global annual losses of more than US$ 100 billion. The num- Oligosporon-type antibiotics . Nematophagous fungi . ber of registered nematicides has declined substantially over Secondary metabolites . Biocontrol the last 25 years due to concerns about their non-specific mechanisms of action and hence their potential toxicity and likelihood to cause environmental damage. Environmentally Introduction beneficial and inexpensive alternatives to chemicals, which do not affect vertebrates, crops, and other non-target organisms, Nematodes as economically important crop pests are therefore urgently required. Nematophagous fungi are nat- ural antagonists of nematode parasites, and these offer an eco- Among more than 26,000 known species of nematodes, 8000 physiological source of novel biocontrol strategies. In this first are parasites of vertebrates (Hugot et al. 2001), whereas 4100 section of a two-part review article, we discuss 83 nematicidal are parasites of plants, mostly soil-borne root pathogens and non-nematicidal primary and secondary metabolites (Nicol et al. 2011). Approximately 100 species in this latter found in nematophagous ascomycetes. Some of these sub- group are considered economically important phytoparasites stances exhibit nematicidal activities, namely oligosporon, of crops. -
Mycoparasite Hypomyces Odoratus Infests Agaricus Xanthodermus Fruiting Bodies in Nature Kiran Lakkireddy1,2†, Weeradej Khonsuntia1,2,3† and Ursula Kües1,2*
Lakkireddy et al. AMB Expr (2020) 10:141 https://doi.org/10.1186/s13568-020-01085-5 ORIGINAL ARTICLE Open Access Mycoparasite Hypomyces odoratus infests Agaricus xanthodermus fruiting bodies in nature Kiran Lakkireddy1,2†, Weeradej Khonsuntia1,2,3† and Ursula Kües1,2* Abstract Mycopathogens are serious threats to the crops in commercial mushroom cultivations. In contrast, little is yet known on their occurrence and behaviour in nature. Cobweb infections by a conidiogenous Cladobotryum-type fungus iden- tifed by morphology and ITS sequences as Hypomyces odoratus were observed in the year 2015 on primordia and young and mature fruiting bodies of Agaricus xanthodermus in the wild. Progress in development and morphologies of fruiting bodies were afected by the infections. Infested structures aged and decayed prematurely. The mycopara- sites tended by mycelial growth from the surroundings to infect healthy fungal structures. They entered from the base of the stipes to grow upwards and eventually also onto lamellae and caps. Isolated H. odoratus strains from a diseased standing mushroom, from a decaying overturned mushroom stipe and from rotting plant material infected mushrooms of diferent species of the genus Agaricus while Pleurotus ostreatus fruiting bodies were largely resistant. Growing and grown A. xanthodermus and P. ostreatus mycelium showed degrees of resistance against the mycopatho- gen, in contrast to mycelium of Coprinopsis cinerea. Mycelial morphological characteristics (colonies, conidiophores and conidia, chlamydospores, microsclerotia, pulvinate stroma) and variations of fve diferent H. odoratus isolates are presented. In pH-dependent manner, H. odoratus strains stained growth media by pigment production yellow (acidic pH range) or pinkish-red (neutral to slightly alkaline pH range). -
Cylindrocladium Buxicola Nom. Cons. Prop.(Syn. Calonectria
I Promotors: Prof. dr. ir. Monica Höfte Laboratory of Phytopathology, Department of Crop Protection Faculty of Bioscience Engineering Ghent University Dr. ir. Kurt Heungens Institute for Agricultural and Fisheries Research (ILVO) Plant Sciences Unit - Crop Protection Dean: Prof. dr. ir. Guido Van Huylenbroeck Rector: Prof. dr. Anne De Paepe II Bjorn Gehesquière Cylindrocladium buxicola nom. cons. prop. (syn. Calonectria pseudonaviculata) on Buxus: molecular characterization, epidemiology, host resistance and fungicide control Thesis submitted in fulfillment of the requirements for the degree of Doctor (PhD) in Applied Biological Sciences III Dutch translation of the title: Cylindrocladium buxicola nom. cons. prop. (syn. Calonectria pseudonaviculata) in Buxus: moleculaire karakterisering, epidemiologie, waardplantresistentie en chemische bestrijding. Please refer to this work as follows: Gehesquière B. (2014). Cylindrocladium buxicola nom. cons. prop. (syn. Calonectria pseudonaviculata) on Buxus: molecular characterization, epidemiology, host resistance and fungicide control. Phd Thesis. Ghent University, Belgium The author and the promotors give authorisation to consult and to copy parts of this work for personal use only. Any other use is limited by Laws of Copyright. Permission to reproduce any material contained in this work should be obtained from the author. The promotors, The author, Prof. dr. ir. M. Höfte Dr. ir. K. Heungens ir. B. Gehesquière IV Een woordje van dank…. Dit dankwoord schrijven is ongetwijfeld het leukste onderdeel van deze thesis, en een mooie afsluiting van een interessante periode. Terugblikkend op de voorbije vier jaren kan ik enkel maar beamen dat een doctoraat zoveel meer is dan een wetenschappelijke uitdaging. Het is een levensreis in al zijn facetten, waarbij ik mezelf heb leren kennen in al mijn goede en slechte kantjes. -
Phylogeny and Taxonomy of the Genus Cylindrocladiella
Mycol Progress DOI 10.1007/s11557-011-0799-1 ORIGINAL ARTICLE Phylogeny and taxonomy of the genus Cylindrocladiella L. Lombard & R. G. Shivas & C. To-Anun & P. W. Crous Received: 10 June 2011 /Revised: 10 November 2011 /Accepted: 25 November 2011 # The Author(s) 2012. This article is published with open access at Springerlink.com Abstract The genus Cylindrocladiella was established to the 18 new Cylindrocladiella species described in this study accommodate Cylindrocladium-like fungi that have small, based on morphological and sequence data, several species cylindrical conidia and aseptate stipe extensions. Contemporary complexes remain unresolved. taxonomic studies of these fungi have relied on morphology and to a lesser extent on DNA sequence comparisons of the internal Keywords Cylindrocladiella . Cryptic species . Phylogeny. transcribed spacer regions (ITS 1, 2 and 5.8S gene) of the Taxonomy ribosomal RNA and the β-tubulin gene regions. In the present study, the identity of several Cylindrocladiella isolates collected over two decades was determined using morphology and phy- Introduction logenetic inference. A phylogeny constructed for these isolates employing the β-tubulin, histone H3, ITS, 28S large subunit and The genus Cylindrocladiella was established by Boesewinkel translation elongation factor 1-alpha gene regions resulted in the (1982) to accommodate five Cylindrocladium-like species identification of several cryptic species in the genus. In spite of producing small, cylindrical conidia. Cylindrocladiella, which is based on -
Abstracts of Oral and Poster Presentations Given at the 10Th International Workshop on Grapevine Trunk Diseases, Reims, France, 4–7 July 2017
Phytopathologia Mediterranea (2017) DOI: 10.14601/Phytopathol_Mediterr-21865 ABSTRACTS Abstracts of oral and poster presentations given at the 10th International Workshop on Grapevine Trunk Diseases, Reims, France, 4–7 July 2017 The 10th International Workshop on Grapevine Trunk diseases was held in Reims, France, on July 4–7 2017. This workshop was co-organized with the COST Action FA1303 entitled “Sustainable control of grape- vine trunk diseases” and supported by the International Organization of Vine and Wine (OIV). The meeting was attended by 240 participants from 29 countries and 155 papers were presented either as oral (63) or poster (92) presentations in four sessions: Pathogen characterization, Detection and epidemiology, Micro- bial ecology, Host-pathogen and fungus-fungus competitive interactions and Disease management. A field tour in the champagne vineyard was co-organized by the Comité Interprofessionnel du Vin de Champagne (CIVC). Delegates were presented with an overview of the Champagne region focussing on “terroir”, varietal crea- tion and grapevine diseases, especially GTDs. The tour concluded with a visit to Mercier cellar with cham- pagne tasting. The workshop is the 10th organized by the International Council on Grapevine Trunk Diseases (www. icgtd.org) and the 2nd one organised by the members of the COST Action FA1303 (www.managtd.eu). The next 11th IWGTD will be held in British Colombia Canada in 2019. Pathogen identification and worldwide, especially with grapevine trunk dis- characterization eases such as Petri disease and esca. Over the last 20 years, 29 species of this genus have been isolated Characterization and pathogenicity of Phaeo- from affected grapevines. However, the role of some acremonium species associated with Petri disease species as causal agents of grapevine dieback as well 1 and esca of grapevine in Spain. -
Ascospore Diversity of Bryophilous Hypocreales and Two New Hepaticolous Nectria Species
Mycologia ISSN: 0027-5514 (Print) 1557-2536 (Online) Journal homepage: http://www.tandfonline.com/loi/umyc20 Ascospore diversity of bryophilous Hypocreales and two new hepaticolous Nectria species Peter Döbbeler To cite this article: Peter Döbbeler (2005) Ascospore diversity of bryophilous Hypocreales and two new hepaticolous Nectria species, Mycologia, 97:4, 924-934 To link to this article: http://dx.doi.org/10.1080/15572536.2006.11832784 Published online: 27 Jan 2017. Submit your article to this journal View related articles Full Terms & Conditions of access and use can be found at http://www.tandfonline.com/action/journalInformation?journalCode=umyc20 Download by: [University of Newcastle, Australia] Date: 28 March 2017, At: 09:31 Mycologia, 97(4), 2005, pp. 924±934. q 2005 by The Mycological Society of America, Lawrence, KS 66044-8897 Ascospore diversity of bryophilous Hypocreales and two new hepaticolous Nectria species Peter DoÈbbeler1 tinct microniches on their hosts, such as ventral leaf Ludwig-Maximilians-UniversitaÈt MuÈnchen, FakultaÈt borders or perianths in Jungermanniales or adaxial fuÈr Biologie, Systematische Botanik und Mykologie, surfaces of leaves in Polytrichales. Several species reg- Menzinger Straûe 67, D-80638 MuÈnchen, Germany ularly develop ascomata on the ventral side of foliose hepatics and perforate host leaves. Ascomata are glo- bose or pyriform, setose or nonsetose, nonstromatic Abstract: Hypocreales represents one of the most perithecia of varying size, and color varies from successful orders of ascomycetes on mosses and he- orange-red to hyaline. Excipulum structures repre- patics, and more than 30 obligately bryophilous spe- sent a variety of tissue types. Hyphae offer additional cies belonging to seven genera of Bionectriaceae and important diagnostic features.