Dihydrokaempferol, and Isoflavone Biosynthesis, 73, 74 3,10
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(12) Patent Application Publication (10) Pub. No.: US 2007/0143878 A1 Bhat Et Al
US 20070143878A1 (19) United States (12) Patent Application Publication (10) Pub. No.: US 2007/0143878 A1 Bhat et al. (43) Pub. Date: Jun. 21, 2007 (54) NUCLEC ACID MOLECULES AND OTHER of application No. 09/198.779, filed on Nov. 24, 1998, MOLECULES ASSOCATED WITH THE now abandoned. TOCOPHEROL PATHWAY Said application No. 09/233,218 is a continuation-in part of application No. 09/227,586, filed on Jan. 8, (76) Inventors: Barkur G. Bhat, St. Louis, MO (US); 1999, now abandoned. Sekhar S. Boddupalli, Manchester, MO Said application No. 09/233,218 is a continuation-in (US); Ganesh M. Kishore, Creve part of application No. 09/229,413, filed on Jan. 12, Coeur, MO (US); Jingdong Liu, 1999, now abandoned. Ballwin, MO (US); Shaukat H. Rangwala, Ballwin, MO (US); (60) Provisional application No. 60/067,000, filed on Nov. Mylavarapu Venkatramesh, Ballwin, 24, 1997. Provisional application No. 60/066,873, MO (US) filed on Nov. 25, 1997. Provisional application No. 60/069.472, filed on Dec. 9, 1997. Provisional appli Correspondence Address: cation No. 60/074,201, filed on Feb. 10, 1998. Pro ARNOLD & PORTER, LLP visional application No. 60/074.282, filed on Feb. 10, 555 TWELFTH STREET, N.W. 1998. Provisional application No. 60/074,280, filed ATTN IP DOCKETING on Feb. 10, 1998. Provisional application No. 60/074, WASHINGTON, DC 20004 (US) 281, filed on Feb. 10, 1998. Provisional application No. 60/074,566, filed on Feb. 12, 1998. Provisional (21) Appl. No.: 11/329,160 application No. 60/074,567, filed on Feb. 12, 1998. -
102 4. Biosynthesis of Natural Products Derived from Shikimic Acid
102 4. Biosynthesis of Natural Products Derived from Shikimic Acid 4.1. Phenyl-Propanoid Natural Products (C6-C3) The biosynthesis of the aromatic amino acids occurs through the shikimic acid pathway, which is found in plants and microorganisms (but not in animals). We (humans) require these amino acids in our diet, since we are unable to produce them. For this reason, molecules that can inhibit enzymes on the shikimate pathway are potentially useful as antibiotics or herbicides, since they should not be toxic for humans. COO COO NH R = H Phenylalanine 3 R = OH Tyrosine R NH3 N Tryptophan H The aromatic amino acids also serve as starting materials for the biosynthesis of many interesting natural products. Here we will focus on the so-called phenyl-propanoide (C6-C3) natural products, e.g.: OH OH OH HO O HO OH HO O Chalcone OH O a Flavone OH O OH O a Flavonone OH OH Ar RO O O O HO O O OH O OR OH Anthocyanine OH O a Flavonol Podophyllotoxin MeO OMe OMe OH COOH Cinnamyl alcohol HO O O Cinnamic acid OH (Zimtsäure) Umbellierfone OH a Coumarin) MeO OH O COOH HO Polymerization OH Wood OH HO OH O OH MeO OMe Shikimic acid O HO 4.2. Shikimic acid biosynthesis The shikimic acid pathway starts in carbohydrate metabolism. Given the great social and industrial significance of this pathway, the enzymes have been intensively investigated. Here we will focus on the mechanisms of action of several key enzymes in the pathway. The following Scheme shows the pathway to shikimic acid: 103 COO- COO- Phosphoenolpyruvate HO COO- 2- O O3P-O 2- O3P-O DHQ-Synthase -
8.2 Shikimic Acid Pathway
CHAPTER 8 © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC NOT FORAromatic SALE OR DISTRIBUTION and NOT FOR SALE OR DISTRIBUTION Phenolic Compounds © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC NOT FOR SALE OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC NOT FOR SALE OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC NOT FOR SALE OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC NOT FOR SALE OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC NOT FOR SALE OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION CHAPTER OUTLINE Overview Synthesis and Properties of Polyketides 8.1 8.5 Synthesis of Chalcones © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC 8.2 Shikimic Acid Pathway Synthesis of Flavanones and Derivatives NOT FOR SALE ORPhenylalanine DISTRIBUTION and Tyrosine Synthesis NOT FOR SALESynthesis OR DISTRIBUTION and Properties of Flavones Tryptophan Synthesis Synthesis and Properties of Anthocyanidins Synthesis and Properties of Isofl avonoids Phenylpropanoid Pathway 8.3 Examples of Other Plant Polyketide Synthases Synthesis of Trans-Cinnamic Acid Synthesis and Activity of Coumarins Lignin Synthesis Polymerization© Jonesof Monolignols & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC Genetic EngineeringNOT FOR of Lignin SALE OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION Natural Products Derived from the 8.4 Phenylpropanoid Pathway Natural Products from Monolignols © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC NOT FOR SALE OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC NOT FOR SALE OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION 119 © Jones & Bartlett Learning, LLC. -
UV-B Absorbing and Bioactive Secondary Compounds in Lichens Xanthoria Elegans and Xanthoria Parietina: a Review
CZECH POLAR REPORTS 10 (2): 252-262, 2020 UV-B absorbing and bioactive secondary compounds in lichens Xanthoria elegans and Xanthoria parietina: A review Vilmantas Pedišius Instrumental Analysis Open Access Centre, Faculty of Natural Sciences, Vytautas Magnus university, Vileikos g. 8-212, LT-44404, Kaunas, Lithuania Abstract Secondary metabolites are the bioactive compounds of plants which are synthesized during primary metabolism, have no role in the development process but are needed for defense and other special purposes. These secondary metabolites, such as flavonoids, terpenes, alkaloids, anthraquinones and carotenoids, are found in Xanthoria genus li- chens. These lichens are known as lichenized fungi in the family Teloschistaceae, which grows on rock and produce bioactive compounds. A lot of secondary compounds in plants are induced by UV (100-400 nm) spectra. The present review showcases the present identified bioactive compounds in Xanthoria elegans and Xanthoria parietina lichens, which are stimulated by different amounts of UV-B light (280-320 nm), as well as the biochemistry of the UV-B absorbing compounds. Key words: UV-B, Xanthoria parietina, Xanthoria elegans, parietin, phenolic compounds, carotenoids, anthraquinone DOI: 10.5817/CPR2020-2-19 Introduction UV-B light plays an important role in membranes and DNA (Gu et al. 2010, nature, yet it may cause adverse effects Yavaş et al. 2020). For example, enhanced in high amounts of it. Chlorofluorocarbons concentrations of the indole 1-methoxy-3- are mainly responsible for the depletion indolylmethyl glucosinolate were reported of ozone layer which results in an increase to result in the formation of DNA adducts of UV-B (280 to 320 nm) irradiation of (Glatt et al. -
Biosynthesis and Engineering of Cyclomarin and Cyclomarazine: Prenylated, Non-Ribosomal Cyclic Peptides of Marine Actinobacterial Origin
UC San Diego Research Theses and Dissertations Title Biosynthesis and Engineering of Cyclomarin and Cyclomarazine: Prenylated, Non-Ribosomal Cyclic Peptides of Marine Actinobacterial Origin Permalink https://escholarship.org/uc/item/21b965z8 Author Schultz, Andrew W. Publication Date 2010 Peer reviewed eScholarship.org Powered by the California Digital Library University of California UNIVERSITY OF CALIFORNIA, SAN DIEGO Biosynthesis and Engineering of Cyclomarin and Cyclomarazine: Prenylated, Non-Ribosomal Cyclic Peptides of Marine Actinobacterial Origin A dissertation submitted in partial satisfaction of the requirements for the degree Doctor of Philosophy in Oceanography by Andrew William Schultz Committee in charge: Professor Bradley Moore, Chair Professor Eric Allen Professor Pieter Dorrestein Professor William Fenical Professor William Gerwick 2010 Copyright Andrew William Schultz, 2010 All rights reserved. The Dissertation of Andrew William Schultz is approved, and it is acceptable in quality and form for publication on microfilm and electronically: ________________________________________________________________ ________________________________________________________________ ________________________________________________________________ Chair University of California, San Diego 2010 iii DEDICATION To my wife Elizabeth and our son Orion and To my parents Dale and Mary Thank you for your never ending love and support iv TABLE OF CONTENTS Signature Page .................................................................................................... -
Texto Completo.Pdf
TIAGO COELHO DE ASSIS LAGE IDENTIFICAÇÃO DE METABÓLITOS SECUNDÁRIOS E ESTUDO DE BIOATIVIDADES DE INTERESSE AGROQUÍMICO E FARMACOLÓGICO DE PLANTAS E LÍQUEN DA SERRA DO BRIGADEIRO – MG Tese apresentada à Universidade Federal de Viçosa, como parte das exigências do Programa de Pós-Graduação em Agroquímica para obtenção do título de Doctor Scientiae. VIÇOSA MINAS GERAIS – BRASIL 2014 FichaCatalografica :: Fichacatalografica https://www3.dti.ufv.br/bbt/ficha/cadastrarficha/visua... Ficha catalográfica preparada pela Biblioteca Central da Universidade Federal de Viçosa - Câmpus Viçosa T Lage, Tiago Coelho de Assis, 1981- L172i Identificação de metabólitos secundários e estudo de 2014 bioatividades de interesse agroquímico e farmacológico de plantas e líquen da Serra do Brigadeiro / Tiago Coelho de Assis Lage. - Viçosa, MG, 2014. xxxiv, 296f. : il. (algumas color.) ; 29 cm. Inclui anexos. Orientador : Sergio Antonio Fernandes. Tese (doutorado) - Universidade Federal de Viçosa. Referências bibliográficas: f.237-275. 1. Produtos naturais. 2. Óleos essenciais. 3. Fungicida. 4. Formicida. 5. Antioxidante. I. Universidade Federal de Viçosa. Departamento de Química. Programa de Pós-graduação em Agroquímica. II. Título. CDD 22. ed. 547.71 2 de 3 06-05-2016 08:43 TIAGO COELHO DE ASSIS LAGE IDENTIFICAÇÃO DE METABÓLITOS SECUNDÁRIOS E ESTUDO DE BIOATIVIDADES DE INTERESSE AGROQUÍMICO E FARMACOLÓGICO DE PLANTAS E LÍQUEN DA SERRA DO BRIGADEIRO – MG Tese apresentada à Universidade Federal de Viçosa, como parte das exigências do Programa de Pós-Graduação em Agroquímica para a obtenção do título de Doctor Scientiae. APROVADA: 10 de outubro de 2014. _________________________ ______________________ Vanderlúcia Fonseca de Paula João Paulo Viana Leite _________________________ _______________________________ Róbson Ricardo Teixeira Erik Daemon de S. -
Bactrev00065-0077.Pdf
BACnEIUOLOGICAL REVIEWS, Dec. 1968, p. 465-492 Vol. 32, No. 4, Pt. 2 Copyright © 1968 American Society for Microbiology Printed in U.S.A. Pathways of Biosynthesis of Aromatic Amino Acids and Vitamins and Their Control in Microorganisms FRANK GIBSON AND JAMES PITTARD John Curtin School of Medical Research, Australian National University, Canberra, Australia, and School of Microbiology, University of Melbourne, Australia INTRODUCTION................................................................ 465 INTERMEDIATES IN AROMATIC BIOsYNTHESIS ...................................... 466 Common Pathway ........................................................... 466 Tryptophan Pathway ........................................................ 468 Pathways to Phenylalanine and Tyrosine ........................................ 469 Pathway to 4-Aminobenzoic Acid.............................................. 469 Intermediates in Ubiquinone Biosynthesis ....................................... 470 Intermediates in Vitamin K Biosynthesis ........................................ 471 Pathways Involving 2,3-Dihydroxybenzoate ..................................... 472 Other Phenolic Growth Factors ............................................... 473 ISOENZYMES AND PROTEIN AGGREGATES CONCERNED IN AROMATIC BiosYNTHESIS ........ 474 Common Pathway ........................................................... 474 Tryptophan Pathway ......................................................... 474 Phenylalanine and Tyrosine Pathways ......................................... -
Biochemical Investigations in the Rare Disease Alkaptonuria: Studies on the Metabolome and the Nature of Ochronotic Pigment
Biochemical Investigations in the Rare Disease Alkaptonuria: Studies on the Metabolome and the Nature of Ochronotic Pigment Thesis submitted in accordance with the requirements of the University of Liverpool for the degree of Doctor of Philosophy by Brendan Paul Norman September 2019 ACKNOWLEDGEMENTS It is hard to describe the journey this PhD has taken me on without reverting to well-worn clichés. There has been plenty of challenges along the way, but ultimately I can look back on the past four years with a great sense of pride, both in the work presented here and the skills I have developed. Equally important though are the relationships I have established. I have lots of people to thank for playing a part in this thesis. First, I would like to thank my supervisors, Jim Gallagher, Lakshminarayan Ranganath and Norman Roberts for giving me this fantastic opportunity. Your dedication to research into alkaptonuria (AKU) is inspiring and our discussions together have always been thoughtful and often offered fresh perspective on my work. It has been a pleasure to work under your supervision and your ongoing support and encouragement continues to drive me on. It has truly been a pleasure to be part of the AKU research group. Andrew Davison deserves a special mention - much of the highs and lows of our PhD projects have been experienced together. Learning LC-QTOF-MS was exciting (and continues to be) but equally daunting at the start of our projects (admittedly more so for me as a Psychology graduate turned mass spectrometrist!). I am very proud of what we have achieved together, largely starting from scratch on the instrument, and we are continuing to learn all the time. -
(12) Patent Application Publication (10) Pub. No.: US 2010/0056643 A1 Bachynsky Et Al
US 2010.0056643A1 (19) United States (12) Patent Application Publication (10) Pub. No.: US 2010/0056643 A1 Bachynsky et al. (43) Pub. Date: Mar. 4, 2010 (54) CHEMICALLY INDUCED INTRACELLULAR (60) Provisional application No. 60/094.286, filed on Jul. HYPERTHERMA 27, 1998. (75) Inventors: Nicholas Bachynsky, Parkland, FL Publication Classification (US); Woodie Roy, Parkland, FL (US) (51) Int. Cl. A63L/045 (2006.01) Correspondence Address: (52) U.S. Cl. S14/728 FULBRIGHT & JAWORSKI, LLP ' ' " ' " 1301 MCKINNEY, SUITE 5100 HOUSTON, TX 77010-3095 (US) (57) ABSTRACT An invention relating to therapeutic pharmacological agents (73) Assignee: STUDE and methods to chemically induce intracellular hyperthermia PHARMACEUTICALS, INC. and/or free radicals for the diagnosis and treatment of infec tions, malignancy and other medical conditions. The inven (21) Appl. No.: 12/613,189 tion relates to a process and composition for the diagnosis or 1-1. killing of cancer cells and inactivation of Susceptible bacte (22) Filed: Nov. 5, 2009 rial, parasitic, fungal, and viral pathogens by chemically gen O O erating heat, and/or free radicals and/or hyperthermia-induc Related U.S. Application Data ible immunogenic determinants by using mitochondrial (63) Continuation of application No. 09/744,622, filed on uncoupling agents, especially 2,4 dinitrophenol and, their May 7, 2002, now Pat. No. 7,635,722, filed as appli conjugates, either alone or in combination with other drugs, cation No. PCT/US99/16940 on Jul. 27, 1999. hormones, cytokines and radiation. Patent Application Publication Mar. 4, 2010 Sheet 1 of 33 US 2010/0056643 A1 Glucose ATP-> A --> ADP Glucose 6-phosphate Fructose 6-phosphate ATP-O- v A --> ADP Fructose 1,6-phosphate Dihydroxyacetone phosphate 2 (Glyceraldehyde 3-phosphate) A -->4H 2 (1,3-Diphosphoylceric acid) 2ADP-- -> +2ATP 2 (3-Phosphoglyceric acid) 2 (2-Phosphoglyceric acid) A 2 (Phosphoenolpyruvic acid) 2ADP-> v A -> 2ATP 2 (Pyruvic acid) NET REACTION PER MOLECULE OF GLUCOSE: Glucose--2ADP+2PO4- 2 Pyruvic acid+2ATP+4H+HEAT FIG, Patent Application Publication Mar. -
Falsi Promotoren: Dr.Ir
f G /UfOo£fo\( ^° BACTERIAL FORMATION OF HYDROXYLATED AROMATIC COMPOUNDS CENTRALE LANDBOUWCATALOOUS 0000 0212 9613 falsi Promotoren: dr.ir. J.A.M, de Bont, hoogleraar in de industriële microbiologie dr.ir. J. Tramper, hoogleraar in de bioprocestechnologie puoj^o'. (Z oG W.J.J, van den Tweel BACTERIAL FORMATION OF HYDROXYLATED AROMATIC COMPOUNDS Proefschrift ter verkrijging van de graad van doctor in de landbouwwetenschappen, op gezag van de rector magnificus, dr. C.C. Oosterlee, in het openbaar te verdedigen op vrijdag 8 april 1988 des namiddags te vier uur in de aula van de Landbouwuniversiteit te Wageningen M'U2,si ^ssr* ^cS^'i l^ofe STELLINGEN 1. Zowel de resultaten als de conclusies van Tokarski et al. betreffende de vorming van (+)-2-aminobutyraat uit 2-ketobutyraat met behulp van een transaminase zijn ernstig aan bedenkingen onderhevig. - Tokarski, Z., Klei, H.E. & Berg, C.M. (1988). Biotechnol. Lett. 10,7-10 2. De door Tabak et al. veronderstelde aerobe groei op tetrachloor- methaan is principieel onjuist. - Tabak, H.H., Quave, S.A., Mashni, Cl. & Barth, E.F. (1981). J. Water Poll. Control Fed. 53,1503-1518 3. De veronderstelling van Nilsson et al., dat na activatie met tosylchloride alléén de primaire hydroxygroepen van agarose zijn gesulfoneerd, is gezien hun eigen onderzoeksresultaten onjuist. - Nilsson, K., Norrlöw, O. & Mosbach, K. (1981). Acta Chem. Scand. 35,19-27 4. Te vaak wordt vergeten dat ook toegepast onderzoek fundamenteel van karakter kan zijn. 5. Het feit dat Stevenson en Mandelstam geen benzaldehyde dehydro genase activiteit vonden in celvrije extracten van 4-hydroxyben- zoaat-gekweekte Pseudomonas putida A.3.12 cellen wordt niet veroorzaakt door instabiliteit van het benzaldehyde dehydrogenase. -
Zopf Extract and Metabolite Physodic Acid on Tumour Microenvironment Modulation in MCF-10A Cells
biomolecules Article Potential Effect of Pseudevernia furfuracea (L.) Zopf Extract and Metabolite Physodic Acid on Tumour Microenvironment Modulation in MCF-10A Cells Klaudia Petrova 1,†, Martin Kello 1,*,† , Tomas Kuruc 1, Miriam Backorova 2, Eva Petrovova 3 , Maria Vilkova 4, Michal Goga 5,6 , Dajana Rucova 6, Martin Backor 6 and Jan Mojzis 1,* 1 Department of Pharmacology, Faculty of Medicine, Pavol Jozef Šafárik University, 040 01 Košice, Slovakia; [email protected] (K.P); [email protected] (T.K.) 2 Department of Pharmaceutical Technology, Pharmacognosy and Botany, University of Veterinary Medicine and Pharmacy, 041 81 Košice, Slovakia; [email protected] 3 Department of Anatomy, Histology and Physiology, University of Veterinary Medicine and Pharmacy, 041 81 Košice, Slovakia; [email protected] 4 Department of NMR Spectroscopy, Institute of Chemistry, Faculty of Science, Pavol Jozef Šafárik University, Moyzesova 11, 040 11 Košice, Slovakia; [email protected] 5 Core Facility Cell Imaging and Ultrastructure Research, University of Vienna, Althanstrasse 14, 1090 Vienna, Austria; [email protected] 6 Department of Botany, Institute of Biology and Ecology, Faculty of Science, Pavol Jozef Šafárik University, Mánesova 23, 041 67 Košice, Slovakia; [email protected] (D.R.); [email protected] (M.B.) * Correspondence: [email protected] (M.K.); [email protected] (J.M.) † Klaudia Petrova and Martin Kello contributed equally to this work. Abstract: Lichens comprise a number of unique secondary metabolites with remarkable biological activities and have become an interesting research topic for cancer therapy. However, only a few of Citation: Petrova, K.; Kello, M.; these metabolites have been assessed for their effectiveness against various in vitro models. -
Antibacterial Activities of Ramalin, Usnic Acid and Its Three
Antibacterial Activities of Ramalin, Usnic Acid and its Three Derivatives Isolated from the Antarctic Lichen Ramalina terebrata Babita Paudela,c, Hari Datta Bhattaraia, Hong Kum Leea, Hyuncheol Ohb, Hyun Woung Shinc, and Joung Han Yima,* a Polar BioCenter, Korea Polar Research Institute (KOPRI), Songdo Technopark, Songdo-dong 7-50, Yeonsu-gu, Incheon 406-840, South Korea. Fax: +82-32-260-6301. E-mail: [email protected] b College of Medical and Life Sciences, Silla University, Busan 617-736, South Korea c Department of Marine Biotechnology, Soonchunhyang University, Asan 336-745, South Korea * Author for correspondence and reprint requests Z. Naturforsch. 65 c, 34 – 38 (2010); received October 5, 2009 The development of new antibacterial compounds is an urgent issue to meet the evolution of resistivity of pathogenic bacteria against the available drugs. The objective of this study was to investigate the antibacterial compounds from the Antarctic lichen species Rama- lina terebrata. A total of fi ve compounds, usnic acid, usimine A, usimine B, usimine C, and ramalin, were isolated by bioactivity guided-fractionation of the methanol extract of R. ter- ebrata after several chromatographic procedures. The qualitative antibacterial activities of the crude extract and isolated compounds were determined by the disk diffusion method while the minimum inhibitory concentration (MIC) determination assay gave the quantita- tive strength of the test samples. All the test samples showed antibacterial activity against Bacillus subtilis. The crude extract and usnic acid showed antibacterial activity against Sta- phylococcus aureus. The MIC values of the isolated compounds against B. subtilis were in the range of 1 to 26 μg/mL.