<<

0.1

AM935842.1.1361 uncultured bacterium Class

AM934953.1.1374 uncultured Burkholderiales bacterium Class Betaproteobacteria

AJ581593.1.1460 uncultured beta proteobacterium Class Betaproteobacteria

AJ581621.1.1418 uncultured beta proteobacterium Class Betaproteobacteria

AJ581620.1.1452 uncultured beta proteobacterium Class Betaproteobacteria

AB252928.1.1503 uncultured beta proteobacterium Class Betaproteobacteria

AY283260.1.1552 Alcaligenes sp. PCNB−2 Class Betaproteobacteria

AM936569.1.1351 uncultured Derxia sp. Class Betaproteobacteria

AY856842.1.1513 Stenotrophomonas sp. 22 Class

AY748888.1.1471 Stenotrophomonas maltophilia Class Gammaproteobacteria

AF100731.1.1472 Stenotrophomonas maltophilia Class Gammaproteobacteria AB257640.1.1537 uncultured gamma proteobacterium Class Gammaproteobacteria

AJ884484.1.1549 Stenotrophomonas sp. Class Gammaproteobacteria

AY856845.1.1538 Stenotrophomonas sp. 45 Class Gammaproteobacteria

AB487113.1.1358 uncultured bacterium

DQ351926.1.1501 uncultured bacterium DQ223206.1.1498 uncultured proteobacterium DQ351927.1.1493 uncultured bacterium

DQ499310.1.1495 uncultured bacterium

AF358001.1.1499 uncultured bacterium AY820173.1.1481 Stenotrophomonas sp. EBPR−1 Class Gammaproteobacteria DQ499293.1.1494 uncultured bacterium

AY555807.1.1460 uncultured bacterium DQ228413.1.1488 uncultured bacterium

AY663436.1.1431 Stenotrophomonas sp. H2 Class Gammaproteobacteria DQ125653.1.1474 uncultured bacterium

AJ973277.1.1534 Pseudomonas sp. NN84 Class Gammaproteobacteria

AY725258.1.1506 uncultured bacterium

AY345536.1.1527 unidentified bacterium

AY661995.1.1531 uncultured bacterium DQ465010.1.1523 Pseudomonas sp. VTT E−052911 Class Gammaproteobacteria RS10 DQ298145.1.1386 uncultured bacterium AB234301.1.1459 Alcaligenes sp. TS−MOSK−5 Class Betaproteobacteria AY838526.1.1522 uncultured bacterium AB234299.1.1490 Alcaligenes sp. TS−MOSK−3 Class Betaproteobacteria DQ159185.1.1457 uncultured bacterium

RS66 AB234302.1.1562 Alcaligenes sp. TS−MOSK−6 Class Betaproteobacteria DQ298326.1.1386 uncultured bacterium

DQ490030.1.1494 uncultured bacterium

AL646053.1205189.1206722 Ralstonia solanacearum GMI1000 Class Betaproteobacteria RS39 RS64 DQ264620.1.1505 uncultured bacterium AY568509.1.1494 uncultured Burkholderia sp. Class Betaproteobacteria RS42 RS43 CP000378.3048145.3049671 Burkholderia cenocepacia AU 1054 Class Betaproteobacteria AY373393.1.1491 uncultured bacterium AY773197.1.1497 Burkholderia sp. Br3469 Class Betaproteobacteria RS59 RS61 RS79 AY568512.1.1525 Burkholderia fungorum Class Betaproteobacteria RS32 AY945874.1.1501 uncultured bacterium AY958854.1.1516 uncultured bacterium AF526940.1.1489 uncultured Ralstonia sp. Class Betaproteobacteria AY957918.1.1527 uncultured bacterium AY957923.1.1520 uncultured bacterium AY957931.1.1529 uncultured bacterium AY959027.1.1519 uncultured bacterium RS86RC DQ234100.1.1513 uncultured bacterium Class Gammaproteobacteria AJ487020.1.1500 uncultured bacterium DQ404909.1.1513 uncultured bacterium DQ347522.1.1399 Paracoccus sp. B−1012 Class RS77 RS65 RS67 RS76 D16212.1.1457 Rhodoferax fermentans Class Betaproteobacteria DQ234143.1.1570 uncultured Enterobacteriaceae bacterium Gammaproteobacteria AJ009470.1.1526 uncultured bacterium SJA−62 Class Betaproteobacteria CS000359.1.1530 Variovorax paradoxus Class Betaproteobacteria AY706442.1.1396 uncultured bacterium CP000826.298569.300103 Serratia proteamaculans 568 Class Gammaproteobacteria DQ256489.1.1211 Variovorax paradoxus Class Betaproteobacteria DQ456289.1.1457 uncultured bacterium RS49 DQ248272.1.1498 uncultured soil bacterium DL213327.8.1540 synthetic construct DQ248235.1.1498 uncultured soil bacterium DQ071483.1.1508 uncultured bacterium DQ248270.1.1496 uncultured soil bacterium RS48 AF523053.1.1486 uncultured bacterium Class Betaproteobacteria D87345.1.1504 unculturable Mariana eubacterium no. 1 Class Gammaproteobacteria AJ536763.1.1422 uncultured bacterium DQ248285.1.1502 uncultured soil bacterium RS73 AY168733.1.1411 uncultured bacterium RS54 AY212561.1.1433 uncultured bacterium RS83 AY957894.1.1546 uncultured bacterium RS28 AY625146.1.1498 uncultured bacterium DQ297950.1.1449 uncultured soil bacterium DQ316832.1.1269 uncultured beta proteobacterium Class Betaproteobacteria DQ492807.1.1480 Pseudoalteromonas sp. BSw20700 Class Gammaproteobacteria AB021341.1.1466 bacterium rM6 AACY020355234.491.2006 marine metagenome RS7 AF364862.1.1425 bacterium BA128 Class Betaproteobacteria CP000884.723807.725332 Delftia acidovorans SPH−1 Class Betaproteobacteria RS18 RS31 AY945883.1.1500 uncultured bacterium AB076856.1.1523 Diaphorobacter nitroreducens Class Betaproteobacteria AY661996.1.1528 uncultured bacterium CU918829.2.1326 uncultured bacterium DQ202243.1.1305 uncultured bacterium CP001340.2866137.2867609 Caulobacter crescentus NA1000 Class Alphaproteobacteria DQ354709.1.1499 uncultured bacterium DQ177494.1.1453 Caulobacter sp. Tibet−S913 Class Alphaproteobacteria DQ354726.1.1498 uncultured bacterium RS60 AB101444.1.1532 Acinetobacter junii Class Gammaproteobacteria DQ184515.1.1442 Brevundimonas sp. C6B3 Class Alphaproteobacteria AM396494.1.1500 Acinetobacter sp. SS−2 Class Gammaproteobacteria DQ395857.1.1455 uncultured RS68 AY863088.1.1410 uncultured bacterium AY293404.1.1421 uncultured alpha proteobacterium Class Alphaproteobacteria RS78 DQ177489.1.1431 Brevundimonas sp. Tibet−IX23 Class Alphaproteobacteria DQ351913.1.1498 uncultured bacterium DQ108394.1.1457 Brevundimonas sp. Tibet−IBa1 Class Alphaproteobacteria DQ404656.1.1441 uncultured bacterium AM697237.1.1429 uncultured bacterium

DQ310730.1.1530 uncultured bacterium RS6 DQ493433.1.1449 soil bacterium TWE165 DQ354720.1.1487 uncultured bacterium RS51 DQ163946.1.1446 uncultured bacterium AJ318163.1.1443 uncultured alpha proteobacterium Class Alphaproteobacteria AY515421.1.1431 uncultured alpha proteobacterium Class Alphaproteobacteria BA000012.2750005.2751465 Mesorhizobium loti MAFF303099 Class Alphaproteobacteria CU920584.1.1304 uncultured bacterium RS12 DQ104991.1.1399 Mesorhizobium sp. JS 6 Class Alphaproteobacteria DQ228378.1.1424 uncultured bacterium DQ305289.1.1365 Mesorhizobium sp. S1−8 Class Alphaproteobacteria AY690680.1.1425 Mesorhizobium sp. GC15 Class Alphaproteobacteria AY922072.1.1337 uncultured alpha proteobacterium Class Alphaproteobacteria RS69

AM490403.1.1451 Mucilaginibacter gracilis Class DQ113412.1.1322 uncultured Bartonella sp. Class Alphaproteobacteria AM114441.1.1290 uncultured bacterium Bacteroidetes DQ113413.1.1323 uncultured Bartonella sp. Class Alphaproteobacteria AJ575720.1.1473 uncultured Bacteroidetes bacterium Phylum Bacteroidetes CU918533.1.1283 uncultured bacterium DQ507209.1.1446 Rhizobium sp. MTR32A Class Alphaproteobacteria CU919014.55.1379 uncultured bacterium AB267719.1.1480 Sphingoterrabacterium composti Class Sphingobacteria DQ468101.1.1444 Ochrobactrum sp. Yw15 Class Alphaproteobacteria DQ083110.1.1480 uncultured bacterium AF250354.1.1401 Sinorhizobium xinjiangense Class Alphaproteobacteria DQ490465.1.1485 Sphingobacteriaceae bacterium KVD−unk−11 Class Sphingobacteria DQ337551.1.1442 Rhizobium sp. BBCT66 Class Alphaproteobacteria AJ879127.1.1445 Sinorhizobium sp. L1 Class Alphaproteobacteria AB330392.1.1451 Mucilaginibacter kameinonensis Class Sphingobacteria AM084032.1.1466 Sinorhizobium sp. R−25078 Class Alphaproteobacteria AM934770.1.1368 uncultured Bacteroidetes bacterium PhylumBacteroidetes DQ337571.1.1448 Rhizobium sp. CHNTR26 Class Alphaproteobacteria RS17 AM935155.1.1368 uncultured Sphingoterrabacterium sp. Class Sphingobacteria AF508095.1.1212 Agrobacterium tumefaciens Class Alphaproteobacteria D14506.1.1472 Agrobacterium sp. NCPPB1650 Class Alphaproteobacteria AF409002.1.1319 Sphingobacteriaceae str. Ellin160 Class Sphingobacteria CU922903.1.1294 uncultured bacterium AY569290.1.1516 uncultured Bacteroidetes bacterium Phylum Bacteroidetes AF525841.1.1409 uncultured soil bacterium DQ501321.1.1433 uncultured Bacteroidetes bacterium Phylum Bacteroidetes DQ395499.1.1472 uncultured organism

DQ501320.1.1480 uncultured Bacteroidetes bacterium Phylum Bacteroidetes CU927207.1.1306 uncultured bacterium DQ450758.1.1310 uncultured alpha proteobacterium Class Alphaproteobacteria DQ451472.1.1478 uncultured Bacteroidetes bacterium Phylum Bacteroidetes DQ413077.1.1408 uncultured bacterium DQ463209.1.1285 uncultured bacterium DQ207363.1.1364 Kartchner Caverns bacterium PF−H DQ336968.1.1445 uncultured bacterium

AF494539.1.1238 benzo CU926364.1.1307 uncultured bacterium AB267716.1.1483 Olivibacter ginsengisoli Class Sphingobacteria CU926633.1.1307 uncultured bacterium AB267715.1.1469 Olivibacter soli Class Sphingobacteria CU922363.1.1299 uncultured bacterium AB252934.1.1450 uncultured alpha proteobacterium Class Alphaproteobacteria DQ298765.1.1522 bacterium 1B1a DQ490464.1.1485 Sphingobacteriaceae bacterium KVD−1969−11 Class Sphingobacteria AY957934.1.1474 uncultured bacterium AB247485.1.1471 uncultured bacterium AF493691.1.1259 Sphingobacteriaceae str. EP211 Class Sphingobacteria AY081988.1.1463 uncultured bacterium AB240509.1.1485 uncultured bacterium CU924130.1.1350 uncultured bacterium DQ248274.1.1484 uncultured soil bacterium CU927036.1.1332 uncultured bacterium AAAA02048336.579.2111 Oryza sativa Indica Group DQ351924.1.1454 uncultured bacterium DQ351918.1.1450 uncultured bacterium DQ339585.1.1380 Flavobacterium sp. Enf24 Class Flavobacteria CP001002.146467.147942 Methylobacterium radiotolerans JCM 2831 Class Alphaproteobacteria AF388029.1.1381 Flavobacterium sp. 36 Class Flavobacteria DQ065780.1.1456 uncultured bacterium DQ235228.1.1475 Pedobacter sandarakinus Class Sphingobacteria RS46

AF385531.1.1415 Pedobacter sp. oral clone AV100 Class Sphingobacteria AY177358.1.1353 phenanthrene−degrading bacterium 35 Class Alphaproteobacteria AJ518767.1.1242 uncultured alpha proteobacterium Class Alphaproteobacteria AM279214.1.1486 Pedobacter rhizospharae Class Sphingobacteria AY922113.1.1346 uncultured alpha proteobacterium Class Alphaproteobacteria AF385549.1.1478 Flavobacterium−like sp. oral clone AZ123 Class Flavobacteria AF358002.1.1453 uncultured bacterium AB264126.1.1422 Nubsella zeaxanthinifaciens Class Sphingobacteria RS47

DQ418544.1.1489 uncultured bacterium AB286367.1.1397 uncultured bacterium AY509377.1.1407 uncultured Sphingobacteriaceae bacterium Class Sphingobacteria CU923508.1.1374 uncultured bacterium AB252093.1.1341 uncultured bacterium DQ303296.1.1480 uncultured Bradyrhizobium sp. Class Alphaproteobacteria DQ071123.1.1407 uncultured marine bacterium DQ125639.1.1450 uncultured bacterium AY922040.1.1388 uncultured Bacteroidetes bacterium Phylum Bacteroidetes CU919026.2.1309 uncultured bacterium AY491570.1.1420 uncultured bacterium CU919927.2.1313 uncultured bacterium AB240274.1.1480 uncultured bacterium CU918905.2.1313 uncultured bacterium AF407695.1.1523 uncultured bacterium DQ298005.1.1432 uncultured soil bacterium AY570631.1.1492 uncultured bacterium CU923678.1.1354 uncultured bacterium AJ488068.1.1625 uncultured bacterium AY570621.1.1493 uncultured bacterium AY218561.1.1484 uncultured bacterium DQ353902.1.1482 uncultured bacterium AY921825.1.1388 uncultured BacteroidetesDQ066988.1.1378 bacterium Phylum uncultured Bacteroidetes bacterium AY571338.1.1544 Sedimentibacter hongkongensis Class DQ499283.1.1484 uncultured bacterium AY913838.1.1434 uncultured bacterium AF534435.1.1444 uncultured bacterium RS45

AB240492.1.1486 uncultured bacterium CU919563.1.1353 uncultured bacterium DQ286650.1.1406 bacterium HY−42−22 Class Clostridia AF402976.1.1446 uncultured bacterium AF287766.1.1519 Eubacterium sp. oral clone DA014 Class Clostridia AB487860.1.1363 uncultured bacterium AM420073.1.1489 uncultured sp. Class Clostridia AB234243.1.1484 uncultured bacterium AY286545.1.1493 Peptostreptococcus sp. MDA2346−2 Class Clostridia AJ535255.1.1479 uncultured bacterium AY349390.1.1487 Peptostreptococcus sp. oral clone FJ023 Class Clostridia

DQ372843.1.1481 uncultured bacterium AF044946.1.1492 Peptostreptococcus sp. S1 Class Clostridia AF538859.1.1484 Peptostreptococcus sp. oral clone P4PA 156 P4 Class Clostridia AB298735.1.1472 Anaerosphaera aminiphila Class Clostridia DQ337541.1.1491 swine effluent bacterium CHNDP1 AY771779.1.1485 Polaribacter irgensii Class Flavobacteria AY948374.1.1296 sponge bacterium Zo6 AY167967.1.1525 swine manure bacterium 37−5 DQ337543.1.1491 swine effluent bacterium CHNDP11 AM259822.1.1380 uncultured Flavobacterium sp. Class Flavobacteria AM176519.1.1453 sp. gpac018A Class Clostridia AM696714.1.1480 uncultured bacterium

BD241745.1.1474 unidentified AM176516.1.1421 Peptoniphilus sp. Gpac003 Class Clostridia AM176535.1.1445 Peptoniphilus sp. Gpac148 Class Clostridia AY962293.1.1444 Lutibacter litoralis Class Flavobacteria DQ351784.1.1485 uncultured Bacteroidetes bacterium Phylum Bacteroidetes AF481225.1.1478 Peptostreptococcus sp. E3 32 Class Clostridia DQ351763.1.1478 uncultured Bacteroidetes bacterium Phylum Bacteroidetes D14153.1.1370 prevotii Class Clostridia RS40 AY397773.1.1433 Brevibacillus sp. R−7152 Class DQ129242.1.1471 uncultured bacterium AJ853564.1.1453 uncultured bacterium AY493971.1.1460 uncultured soil bacterium DQ350827.1.1530 Brevibacillus borstelensis Class Bacilli AJ441220.1.1420 uncultured Bacteroidetes bacterium Phylum Bacteroidetes CU921805.1.1355 uncultured bacterium RS21 AF378232.1.1488 Brevibacillus invocatus Class Bacilli AB243253.1.1354 uncultured bacterium Class Bacteroidia AM292398.1.1325 Flavobacteriaceae bacterium enrichment culture clone MH−1864 ClassCU925607.1.1355 Flavobacteria uncultured bacterium AB210966.1.1491 Brevibacillus sp. SSCT72 Class Bacilli AB234393.1.1355 uncultured Bacteroidales bacterium Class Bacteroidia RS37 AY397767.1.1443 Brevibacillus sp. R−6469 Class Bacilli AY491552.1.1520 uncultured bacterium RS29 AM292059.1.1373 Brevibacillus brevis Class Bacilli BD287721.2.1685 unidentified Novel polycyclic aromatic hydrocarbon decomposing microorganism CU923340.1.1356 uncultured bacterium AY319301.1.1532 Brevibacillus agri Class Bacilli CU466718.1.1277 uncultured Bacteroidetes bacterium Phylum Bacteroidetes AJ879076.1.1518 Anoxybacillus rupiensis Class Bacilli RS71 DQ452024.1.1373 Geobacillus sp. HT10 Class Bacilli AY959140.1.1508 uncultured bacterium AY327448.1.1506 Geobacillus caldoproteolyticus Class Bacilli DQ448752.1.1479 Bacilli sp. CNJ958 PL04 Class Bacilli

AF314421.1.1399 uncultured bacterium PHOS−HE28 Class Bacteroidetes AB073167.1.1548 Bacillus sp. KSM−P358 Class Bacilli AB015264.1.1483 uncultured Cytophaga sp. Class Cytophagia AF227850.1.1518 Bacillus sp. 86348 Class Bacilli DQ404704.1.1535 uncultured bacterium DQ448745.1.1518 Bacillus sp. CNJ796 PL04 Class Bacillus RS52 DQ404695.1.1511 uncultured bacterium DQ399757.1.1413 Staphylococcus sp. B−4183 Class Bacilli DQ241391.1.1491 uncultured bacterium CP000029.150374.151927 Staphylococcus epidermidis RP62A phage SP−beta Class Bacillus DQ447779.1.1427 Bacillus sp. MSFC 3−M1−R−1 Class Bacilli AY422985.1.1459 Bacillus sp. R−7413 Class Bacilli AY606801.1.1548 Bacillus alveayuensis Class Bacilli DQ413096.1.1447 uncultured bacterium AY603079.1.1442 Bacillus sp. STB9 Class Bacilli AY289498.1.1504 Bacillus sp. IDA4740 Class Bacilli AY604052.1.1511 uncultured bacterium AY739687.1.1367 uncultured bacterium RS41 AM934691.1.1522 Bacillus sp. BF98 Class Bacilli AY172987.1.1564 Bacillus sp. DQ371235.1.1417 Bacillus sp. E−2006 Class Bacilli AY948023.1.1412 uncultured phototrophic eukaryote AF137379.119714.121227 Nephroselmis olivacea Phylum Chlorophyta AB355043.1.1464 uncultured bacterium AM420146.1.1492 uncultured Bacteroidetes bacterium Phylum Bacteroidetes AF001659.1.1490 environmental clone OCS162 AF393608.1.1518 Pyramimonas parkeae AJ583191.1.1384 uncultured Bacteroidetes bacterium Phylum Bacteroidetes AY302116.1.1450 uncultured bacterium DQ422812.109483.110989 Chlorokybus atmophyticus DQ229107.137546.139060 Chara vulgaris AF502210.1.1451 uncultured bacterium AF393611.1.1458 Spirogyra maxima AF393593.1.1465 Coleochaete orbicularis AF361187.1.1343 Flexibacter sp. CF 1 Class Cytophagia AY425776.1.1412 uncultured phototrophic eukaryote AF368190.1.1449 uncultured Haliscomenobacter sp. Class Sphingobacteria AP004638.91243.92746 Psilotum nudum EUKARYOTE AB240305.1.1451 uncultured bacterium DQ478786.1.1414 Nageia nagi AJ428413.101402.102892 Calycanthus floridus var. glaucus RS82 AJ575719.1.1482 uncultured Bacteroidetes bacterium Phylum Bacteroidetes AB486143.1.1369 uncultured bacterium AP005408.67422.68902 Oryza sativa Japonica Group AC078977.88099.89557 Oryza sativa Japonica Group AF454327.1.1395 uncultured phototrophic eukaryote AB486140.1.1368 uncultured bacterium DQ354713.1.1447 uncultured bacterium AB329629.1.1477 Niastella sp. KP03 Class Sphingobacteria AF393605.1.1496 Pedinomonas minor DQ450743.1.1359 uncultured Bacteroidetes bacterium Phylum Bacteroidetes AY702164.1.1220 Chlorarachniophyte sp. RCC435 RS27 AF393609.1.1493 Scherffelia dubia AY302126.1.1455 uncultured bacterium AF289247.1.1423 Eutreptia viridis Class Euglenida AF289240.1.1408 Euglena anabaena Class Euglenida AF289246.1.1394 Euglena tristella Class Euglenida AY626043.1.1402 Euglena deses AY862008.1.1242 uncultured phototrophic eukaryote AB374385.1.1523 uncultured Chlorophyta D11346.1.1545 Parachlorella kessleri DQ059300.1.1495 Prochlorales cyanobacterium EV−7 Class AB001684.22293.23786 Chlorella vulgaris AY792298.1.1507 uncultured Bacteroidetes bacterium Phylum Bacteroidetes AY218676.1.1507 uncultured bacterium AJ245645.3807.5344 Prototheca wickerhamii

RS53

DQ450746.1.1200 uncultured Bacteroidetes bacterium Phylum Bacteroidetes AB504925.1.1451 uncultured bacterium

AB308369.1.1397 bacterium TG124 AB286466.1.1441 uncultured bacterium

D11348.1.1636

AB264128.1.1432 Flavobacteriaceae bacterium TDMA−34 Class Flavobacteria

CU921642.1.1352 uncultured bacterium

CU923649.1.1341 uncultured bacterium

AF502207.1.1434 uncultured bacterium

DQ295906.1.1492 uncultured bacterium

AY211071.1.1494 uncultured Bacteroidetes bacterium Phylum Bacteroidetes AB476194.1.1446 uncultured bacterium

AY211072.1.1494 uncultured Bacteroidetes bacterium Phylum Bacteroidetes AF468341.1.1415 uncultured bacterium

AF468339.1.1427 uncultured bacterium

AJ867910.1.1695 uncultured

DQ501325.1.1483 uncultured Bacteroidetes bacterium Phylum Bacteroidetes

AY792299.1.1528 uncultured Bacteroidetes bacterium Phylum Bacteroidetes

AM749771.1.1396 Bacteroidetes bacterium P373 Phylum Bacteroidetes

AB301494.1.1446 Lewinella lutea Class Sphingobacteria AJ292689.1.1494 uncultured eubacterium WD215

AB301495.1.1446 Lewinella marina Class Sphingobacteria DQ269095.1.1244 uncultured Bacteroidetes bacterium Phylum Bacteroidetes AB257654.1.1531 uncultured phototrophic eukaryote AF314434.1.1374 uncultured bacterium PHOS−HE79 Phylum Bacteroidetes AB301616.1.1451 Lewinella persicus Class Sphingobacteria

CU466750.2.1341 uncultured Bacteroidetes bacterium Phylum Bacteroidetes

DQ070792.1.1389 uncultured Cytophaga sp. Class Cytophagia

CU466727.1.1342 DQ232754.1.1413 uncultured Bacteroidetes filamentous bacterium bacterium Phylum Plant1 Bacteroidetes Iso8 Phylum Bacteroidetes

AM040120.1.1482 uncultured Bacteroidetes bacterium Phylum Bacteroidetes

DQ289934.1.1387 uncultured Bacteroidetes bacterium Phylum Bacteroidetes