A Comparative Diversity Study of Myxomycetes in the Lowland Forests of Mt
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A First Contribution to the Knowledge of Mycetozoa from Aveyron (France)
Carnets natures, 2021, vol. 8 : 67-81 A First Contribution to the knowledge of Mycetozoa from Aveyron (France) Jonathan Cazabonne¹, Michel Ferrières² et Jean-Louis Menos³ Abstract A first official taxonomic checklist of myxomycetes from the French department Aveyron is presented. As the result of data collected by the Mycological and Botanical Association of Aveyron (AMBA), literature and online research, a total of 21 species representing 14 genera, 7 families and 5 orders, were recorded. The following information for each taxon was reported: Latin name, author(s), Basionym, locality (if known) and record sources. Macrophotographs of some new records are also appended. This work is a contribution to the knowledge of myxomycetes of Aveyron, which will eventually be integrated into a national checklist project of French myxomycetes. Key words: Biodiversity, inventory, taxonomy, Myxomycetes, Occitanie. Résumé Une première contribution à la connaissance des Mycetozoa de l’Aveyron (France) Une première liste officielle sur les Myxomycètes du département français de l’Aveyron est présentée. Au total, 21 espèces représentant 14 genres, 7 familles et 5 ordres, ont été listées, grâce aux données collectées par l’Association Mycologique et Botanique de l’Aveyron (AMBA) et à un travail de recherche bibliographique. Les informations suivantes pour chaque taxon ont été indiquées : nom latin, auteur(s), basionyme, localité (si connue) et les références. Des macrophotographies de quelques nouveaux taxa aveyronnais sont aussi annexées. Ce travail est une contribution à la connaissance des myxomycètes d’Aveyron, qui sera éventuellement intégré à un projet de checklist nationale des Myxomycètes de France. Mots clés : Biodiversité, inventaire, taxonomie, Myxomycètes, Occitanie. -
Biodiversity of Plasmodial Slime Moulds (Myxogastria): Measurement and Interpretation
Protistology 1 (4), 161–178 (2000) Protistology August, 2000 Biodiversity of plasmodial slime moulds (Myxogastria): measurement and interpretation Yuri K. Novozhilova, Martin Schnittlerb, InnaV. Zemlianskaiac and Konstantin A. Fefelovd a V.L.Komarov Botanical Institute of the Russian Academy of Sciences, St. Petersburg, Russia, b Fairmont State College, Fairmont, West Virginia, U.S.A., c Volgograd Medical Academy, Department of Pharmacology and Botany, Volgograd, Russia, d Ural State University, Department of Botany, Yekaterinburg, Russia Summary For myxomycetes the understanding of their diversity and of their ecological function remains underdeveloped. Various problems in recording myxomycetes and analysis of their diversity are discussed by the examples taken from tundra, boreal, and arid areas of Russia and Kazakhstan. Recent advances in inventory of some regions of these areas are summarised. A rapid technique of moist chamber cultures can be used to obtain quantitative estimates of myxomycete species diversity and species abundance. Substrate sampling and species isolation by the moist chamber technique are indispensable for myxomycete inventory, measurement of species richness, and species abundance. General principles for the analysis of myxomycete diversity are discussed. Key words: slime moulds, Mycetozoa, Myxomycetes, biodiversity, ecology, distribu- tion, habitats Introduction decay (Madelin, 1984). The life cycle of myxomycetes includes two trophic stages: uninucleate myxoflagellates General patterns of community structure of terrestrial or amoebae, and a multi-nucleate plasmodium (Fig. 1). macro-organisms (plants, animals, and macrofungi) are The entire plasmodium turns almost all into fruit bodies, well known. Some mathematics methods are used for their called sporocarps (sporangia, aethalia, pseudoaethalia, or studying, from which the most popular are the quantita- plasmodiocarps). -
Slime Molds: Biology and Diversity
Glime, J. M. 2019. Slime Molds: Biology and Diversity. Chapt. 3-1. In: Glime, J. M. Bryophyte Ecology. Volume 2. Bryological 3-1-1 Interaction. Ebook sponsored by Michigan Technological University and the International Association of Bryologists. Last updated 18 July 2020 and available at <https://digitalcommons.mtu.edu/bryophyte-ecology/>. CHAPTER 3-1 SLIME MOLDS: BIOLOGY AND DIVERSITY TABLE OF CONTENTS What are Slime Molds? ....................................................................................................................................... 3-1-2 Identification Difficulties ...................................................................................................................................... 3-1- Reproduction and Colonization ........................................................................................................................... 3-1-5 General Life Cycle ....................................................................................................................................... 3-1-6 Seasonal Changes ......................................................................................................................................... 3-1-7 Environmental Stimuli ............................................................................................................................... 3-1-13 Light .................................................................................................................................................... 3-1-13 pH and Volatile Substances -
茨城県産変形菌類目録 Myxomycetes Flora of Ibaraki Prefecture, Japan
茨城県自然博物館研究報告 Bull. Ibaraki Nat. Mus.,( 21): 91-128(2018) 91 資 料 茨城県産変形菌類目録 宮本卓也*・鈴木 博**・萩原博光*** (2018 年 10 月 31 日受理) Myxomycetes Flora of Ibaraki Prefecture, Japan * ** *** Takuya MIYAMOTO , Hiroshi SUZUKI and Hiromitsu HAGIWARA (Accepted October 31, 2018) Abstract :HVWXGLHG0\[RP\FHWHVÀRUDRI,EDUDNL3UHIHFWXUHEDVHGRQKHUEDULXPVSHFLPHQVGHSRVLWHGLQ WKHERWKKHUEDULDRIWKH1DWLRQDO0XVHXPRI1DWXUHDQG6FLHQFH7VXNXEDDQGWKH,EDUDNL1DWXUH0XVHXP %DQGR7KHVHVSHFLPHQVZHUHLGHQWL¿HGDVWD[D VSHFLHVYDULHWLHVDQGIRUPV LQFOXGLQJRQHWD[RQQHZ WR-DSDQDQGWD[DQHZWR,EDUDNL3UHIHFWXUH7KHVFLHQWL¿FQDPHVDQGWKHFROOHFWLRQVLWHVRIWKHVH WD[DZHUHOLVWHGLQWKHSUHVHQWVWXG\7KLVQXPEHURIWKH0\[RP\FHWHVWD[DLVVHFRQGODUJHVWLQWKRVHRI -DSDQHVH3UHIHFWXUHV Key words: (FRORJ\,EDUDNL3UHIHFWXUH0\[RP\FHWHV7D[RQRP\ ある唯一の種類が茨城県産ではなく,千葉県産となる. はじめに このことから,Emoto(1977)の原色図譜が茨城県を 『大日本植物誌第 8 巻・変形菌類』(江本,)は, 産地として明記した最初の報告となる. 日本初の変形菌モノグラフである.そこでの産地の表 茨城県産変形菌の本格的な調査は,1979 年に茨城 示は , 普通種の場合には「日本各地」とあり,産地が 大学学生の入江淑恵によって行われ,未同定の 5 種類 限定される種類の場合には旧国名で記されている.旧 を含む 32 種類が報告されている(入江,1982).同じ 国名では,茨城県の北東部は「常陸」であり,南西部 く茨城大学学生の長岡勝典は,1981 年に調査を行っ は千葉県の北部と共に「下総」となる.江本() て 種類を確認し,Emoto(1977)および入江(1982) のモノグラフには「常陸」の産地表示はない.一方,「下 の記録と合わせて 70 種類が茨城県に産することを報 総」の産地表示があるのが,Diderma hemisphaericum 告した(長岡,1983).以後,茨城県産変形菌につい (%XOO.)Hornem である. その後,Emoto(1977) は, ての報告は皆無に等しく,Yamamoto(2000)による 茨城県産として,15 種類の変形菌を報告しているが, Licea parvicapitata Y. Yamam. の新種記載の発表に本県 この中には D. hemisphaericum は含まれていない.つ 産標本が引用されたほかは,いくつかの論文,学会記事, まり,江本()が記録した,茨城県産の可能性が 図鑑などに取り上げられているが(棚谷,1982; 日本変 * ミュージアムパーク茨城県自然博物館 〒 茨城県坂東市大崎 700(,EDUDNL1DWXUH0XVHXP2VDNL -
The Mycetozoa of North America, Based Upon the Specimens in The
THE MYCETOZOA OF NORTH AMERICA HAGELSTEIN, MYCETOZOA PLATE 1 WOODLAND SCENES IZ THE MYCETOZOA OF NORTH AMERICA BASED UPON THE SPECIMENS IN THE HERBARIUM OF THE NEW YORK BOTANICAL GARDEN BY ROBERT HAGELSTEIN HONORARY CURATOR OF MYXOMYCETES ILLUSTRATED MINEOLA, NEW YORK PUBLISHED BY THE AUTHOR 1944 COPYRIGHT, 1944, BY ROBERT HAGELSTEIN LANCASTER PRESS, INC., LANCASTER, PA. PRINTED IN U. S. A. To (^My CJriend JOSEPH HENRI RISPAUD CONTENTS PAGES Preface 1-2 The Mycetozoa (introduction to life history) .... 3-6 Glossary 7-8 Classification with families and genera 9-12 Descriptions of genera and species 13-271 Conclusion 273-274 Literature cited or consulted 275-289 Index to genera and species 291-299 Explanation of plates 301-306 PLATES Plate 1 (frontispiece) facing title page 2 (colored) facing page 62 3 (colored) facing page 160 4 (colored) facing page 172 5 (colored) facing page 218 Plates 6-16 (half-tone) at end ^^^56^^^ f^^ PREFACE In the Herbarium of the New York Botanical Garden are the large private collections of Mycetozoa made by the late J. B. Ellis, and the late Dr. W. C. Sturgis. These include many speci- mens collected by the earlier American students, Bilgram, Farlow, Fullmer, Harkness, Harvey, Langlois, Macbride, Morgan, Peck, Ravenel, Rex, Thaxter, Wingate, and others. There is much type and authentic material. There are also several thousand specimens received from later collectors, and found in many parts of the world. During the past twenty years my associates and I have collected and studied in the field more than ten thousand developments in eastern North America. -
Origin and Diversification of Eukaryotes
MI66CH20-Katz ARI 21 June 2012 17:22 V I E E W R S Review in Advance first posted online on July 9, 2012. (Changes may still occur before final publication E online and in print.) I N C N A D V A Origin and Diversification of Eukaryotes Laura A. Katz Department of Biological Sciences, Smith College, Northampton, Massachusetts 01063; email: [email protected] Program in Organismic and Evolutionary Biology, University of Massachusetts, Amherst, Massachusetts 01003 Annu. Rev. Microbiol. 2012. 66:411–27 Keywords The Annual Review of Microbiology is online at eukaryotic diversity, protists, tree of life, nucleus, cytoskeleton, micro.annualreviews.org mitochondria This article’s doi: by SMITH COLLEGE on 08/12/12. For personal use only. 10.1146/annurev-micro-090110-102808 Abstract Copyright c 2012 by Annual Reviews. The bulk of the diversity of eukaryotic life is microbial. Although the larger All rights reserved Annu. Rev. Microbiol. 2012.66. Downloaded from www.annualreviews.org eukaryotes—namely plants, animals, and fungi—dominate our visual land- 0066-4227/12/1013-0411$20.00 scapes, microbial lineages compose the greater part of both genetic diversity and biomass, and contain many evolutionary innovations. Our understand- ing of the origin and diversification of eukaryotes has improved substan- tially with analyses of molecular data from diverse lineages. These data have provided insight into the nature of the genome of the last eukaryotic com- mon ancestor (LECA). Yet, the origin of key eukaryotic features, namely the nucleus and cytoskeleton, remains poorly understood. In contrast, the past decades have seen considerable refinement in hypotheses on the major branching events in the evolution of eukaryotic diversity. -
A Checklist of Egyptian Fungi: I
Mycosphere 4 (4): 794–807 (2013) ISSN 2077 7019 www.mycosphere.org Article Mycosphere Copyright © 2013 Online Edition Doi 10.5943/mycosphere/4/4/15 A checklist of Egyptian fungi: I. Protozoan fungal analogues Abdel-Azeem AM1* and Salem Fatma M1 1Laboratory of systematic Mycology, Botany and Microbiology Department, Faculty of Science, University of Suez Canal, Ismailia 41522, Egypt. e-mail: [email protected], [email protected] Abdel-Azeem AM, Salem Fatma M 2013 – A checklist of Egyptian fungi: I. Protozoan fungal analogues. Mycosphere 4(4), 794–807, Doi 10.5943/mycosphere/4/4/15 Abstract Records of Egyptian fungi are scattered through a wide array of journals, books, dissertations, and preliminary annotated checklists and compilations. By screening all available sources of information, it was possible to delineate 61 taxa, including 3 varieties, belonging to 29 genera of protozoan fungal analogues that have been reported from Egypt. A provisional key to the identification of reported taxa is given. This is the first species list of protozoan fungus-like analogues from Egypt. Key words – Amoebozoa – biodiversity – Cercozoa – documentation – Liceida – Mycobiota – Physarum Introduction For Egypt, only very few comprehensive assessments of local fungi have been published (e.g. El-Abyad and Abu-Taleb 1993; El-Abyad 1997; Abdel-Azeem, 2010). Documentation of the Egyptian fungi may be dated back to 4500 B.C., when ancient Egyptians produced a number of hieroglyphic reliefs of plants (many of which are psychedelic) on walls and within texts throughout Egypt (Abdel-Azeem 2010). Abdel-Azeem has traced the history of scientific work with fungi in Egypt from its earliest beginnings, almost 200 years ago, through to the present day and published a full review of the history of mycology in Egypt, together with updated assessment of 2281 species of fungi for the country, and an expectation of future perspectives for mycology in Egypt. -
Eukaryotic Microbiology Protistologists
The Journal of Published by the International Society of Eukaryotic Microbiology Protistologists J. Eukaryot. Microbiol., 57(2), 2010 pp. 189–196 r 2010 The Author(s) Journal compilation r 2010 by the International Society of Protistologists DOI: 10.1111/j.1550-7408.2009.00466.x Invalidation of Hyperamoeba by Transferring its Species to Other Genera of Myxogastria ANNA MARIA FIORE-DONNO,a AKIKO KAMONO,b EMA E. CHAO,a MANABU FUKUIb and THOMAS CAVALIER-SMITHa aZoology Department, University of Oxford, South Parks Road, OX1 3PS Oxford, United Kingdom, and bThe Institute of Low Temperature Science, Hokkaido University, Kita 19, Nishi 8, Kita-ku, Sapporo, Hokkaido 010-0819, Japan ABSTRACT. The genus Hyperamoeba Alexeieff, 1923 was established to accommodate an aerobic amoeba exhibiting three life stages— amoeba, flagellate, and cyst. As more species/strains were isolated, it became increasingly evident from small subunit (SSU) gene phylo- genies and ultrastructure that Hyperamoeba is polyphyletic and its species occupy different positions within the class Myxogastria. To pinpoint Hyperamoeba strains within other myxogastrid genera we aligned numerous myxogastrid sequences: whole small subunit ribo- somal (SSU or 18S rRNA) gene for 50 dark-spored (i.e. Stemonitida and Physarida) Myxogastria (including a new ‘‘Hyperamoeba’’/ Didymium sequence) and a 400-bp SSU fragment for 147 isolates assigned to 10 genera of the order Physarida. Phylogenetic analyses show unambiguously that the type species Hyperamoeba flagellata is a Physarum (Physarum flagellatum comb. nov.) as it nests among other Physarum species as robust sister to Physarum didermoides. Our trees also allow the following allocations: five Hyperamoeba strains to the genus Stemonitis; Hyperamoeba dachnaya, Pseudodidymium cryptomastigophorum, and three other Hyperamoeba strains to the genus Didymium; and two further Hyperamoeba strains to the family Physaridae. -
Myxomycetes in Arid Zones of Peru Part II: the Cactus Belt and Transition Zones
Anales del Jardín Botánico de Madrid 76 (2): e083 https://doi.org/10.3989/ajbm.2520 ISSN-L: 0211-1322 Diversity of Myxomycetes in arid zones of Peru part II: the cactus belt and transition zones Carlos LADO 1,*, Diana WRIGLEY DE BASANTA 2, Arturo ESTRADA-TORRES 3, Steven L. STEPHENSON 4 & I. TREVIÑO 5 1,2 Real Jardín Botánico de Madrid CSIC, Plz. de Murillo no. 2, 28014 Madrid, Spain. 3 Centro Tlaxcala de Biología de la Conducta, Universidad Autónoma de Tlaxcala, Av. Universidad no. 1, La Loma Xicohténcatl, 90,062 Tlaxcala, Mexico. 4 Department of Biological Sciences, University of Arkansas, Fayetteville, AR 72701, United States of America. 5 Universidad Nacional de San Agustín de Arequipa, Av. Alcides Carrión s.n., Arequipa, Peru. * Corresponding author: [email protected], https://orcid.org/0000-0002-6135-2873 2 [email protected], https://orcid.org/0000-0002-7700-8399 3 [email protected], https://orcid.org/0000-0001-5691-7844 4 [email protected], https://orcid.org/0000-0002-9207-8037 5 [email protected], https://orcid.org/0000-0002-2406-7862 Abstract. The results obtained from a second survey for Myxomycetes Resumen. Se presentan los resultados de un segundo estudio sobre in the arid areas of Peru are reported. A total of 37 localities from the Myxomycetes de zonas áridas de Perú. Un total de 37 localidades del cactus belt (‘cardonal’), between 1500 and 3000 m a.s.l., were sampled cardonal, situadas entre 1500 y 3000 m s.n.m., fueron muestreadas over six years. This survey is based on 601 identifiable collections of durante seis años. -
Distribution and Diversity of Myxomycetes in Tiantangzhai National Forest Park, China
Distribution and diversity of myxomycetes in Tiantangzhai National Forest Park, China Min Li1,*, Gaowei Wang1,2,*, Yang Gao1,3, Mingzhu Dou1, Ziqi Wang1, Shuzhen Yan1 and Shuanglin Chen1 1 College of Life Sciences, Nanjing Normal University, Nanjing, China 2 Henan Key Laboratory of Children’s Genetics and Metabolic Diseases, Children’s Hospital Affiliated to Zhengzhou University, Henan Children’s Hospital, Zhengzhou Children’s Hospital, Zhengzhou, China 3 Bioengineering and Technological Research Centre for Edible and Medicinal Fungi, Jiangxi Agricultural University, Nanchang, China * These authors contributed equally to this work. ABSTRACT Although myxomycetes are ubiquitous in terrestrial ecosystems, studies on their distribution and diversity in subtropical humid forests are still lacking. Field collections and moist chamber cultures were conducted from May to October within a two-year period in the Tiantangzhai National Forest Park of China. A total of 1,492 records representing 73 species belonging to 26 genera were obtained, of which 243 records/37 species were from field collections, and 1,249 records/52 species were from moist chamber cultures. Among the specimens obtained by culturing, 896 records/38 species and 353 records/37 species were obtained from living bark and ground litter, respectively. ANOVA showed that the sampling months had significant impacts on collection of myxomycetes from field and those that inhabit litter. An LEfSe analysis indicated that Arcyria was significantly abundant in August, while Stemonitis and Physarum were more abundant in July when collected from field. An RDA analysis showed that temperature was the main factor that affected the Submitted 20 April 2021 litter-inhabiting myxomycetes. The ANOVA indicated that forest type was the Accepted 4 August 2021 significant factor for bark-inhabiting myxomycetes. -
Myxomycetes (Myxogastria) of Nampo Shoto (Bonin & Volcano Islands)
Bull. Natl. Mus. Nat. Sci., Ser. B, 43(3), pp. 63–68, August 22, 2017 Myxomycetes (Myxogastria) of Nampo Shoto (Bonin & Volcano Islands) (3) Tsuyoshi Hosoya1,*, Kentaro Hosaka1 and Yukinori Yamamoto2 1 Department of Botany, National Museum of Nature and Science, Amakubo 4–1–1, Tsukuba, Ibaraki 305–0005, Japan 2 1010–53 Ohtsu-ko, Kochi, Kochi 781–5102, Japan *E-mail: [email protected] (Received 18 April, 2017, accepted 28 June, 2017) Abstract In an exploration of Nampo Shoto (Southern Islands, consisting of the Ogasawara and Volcano islands) in June 2009, 22 myxomycete taxa were documented based on 44 specimens. Of these, Fuligo candida and Stemonitis pallida were newly documented. Key words : Kita-Iwojima Island, taxonomy. mately 200 km south of the Ogasawara Islands. Introduction Although Minami-Iwojima has been uninhabited To date, approximately 1000 taxa of myxomy- since recorded history, Kita-Iwojima was colo- cetes have been described worldwide, with some nized in 1899, but has been uninhabited since 400 taxa being recorded in Japan (Yamamoto, 1944 when the inhabitants were forced to evacu- 1998). The majority of the Japanese records are ate the island during the war. Because of their based on Japan’s main islands, whereas smaller geographical isolation and the relative lack of islands have not been well surveyed, with the human activity, the natural life on both islands exception some areas that have been surveyed has been receiving attention from researchers. with special attention (e.g., the islands of Yaku- However, because of severe geographical and shima and Iriomote). environmental conditions, approaching these Located in the mid-Pacific Ocean, the so- islands is generally extremely difficult. -
New Protocol for Successful Isolation and Amplification of DNA from Exiguous Fractions of Specimens
New protocol for successful isolation and amplification of DNA from exiguous fractions of specimens: a tool to overcome the basic obstacle in molecular analyses of myxomycetes Paulina Janik, Michaª Ronikier and Anna Ronikier W. Szafer Institute of Botany, Polish Academy of Sciences, Kraków, Poland ABSTRACT Herbarium collections provide an essential basis for a wide array of biological research and, with development of DNA-based methods, they have become an invaluable material for genetic analyses. Yet, the use of such material is hindered by technical limitations related to DNA degradation and to quantity of biological material. The latter is inherent for some biological groups, as best exemplified by myxomycetes which form minute sporophores. It is estimated that ca. two-thirds of myxomycete taxa are represented by extremely scanty material. As DNA isolation methods applied so far in myxomycete studies require destructive sampling of many sporophores, a large part of described diversity of the group remains unavailable for phylogenetic studies or barcoding. Here, we tested several procedures of DNA isolation and amplification to seek for an efficient and possibly non-destructive method of sampling. Tests were based on herbarium specimens of 19 species representing different taxonomic orders. We assayed several variants of isolation based on silica gel membrane columns, and a newly designed procedure using highly reduced amount of biological material (small portion of spores), based on fine disruption of spores and direct PCR. While the most frequently used column-based method led to PCR success in 89.5% of samples when a large amount of material was used, its performance dropped to 52% when based on Submitted 14 August 2019 single sporophores.