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Workflows for Rapid Functional Annotation of Diverse
insects Article Workflows for Rapid Functional Annotation of Diverse Arthropod Genomes Surya Saha 1,2 , Amanda M. Cooksey 2,3, Anna K. Childers 4 , Monica F. Poelchau 5 and Fiona M. McCarthy 2,* 1 Boyce Thompson Institute, 533 Tower Rd., Ithaca, NY 14853, USA; [email protected] 2 School of Animal and Comparative Biomedical Sciences, University of Arizona, 1117 E. Lowell St., Tucson, AZ 85721, USA; [email protected] 3 CyVerse, BioScience Research Laboratories, University of Arizona, 1230 N. Cherry Ave., Tucson, AZ 85721, USA 4 Bee Research Laboratory, Beltsville Agricultural Research Center, Agricultural Research Service, USDA, 10300 Baltimore Ave., Beltsville, MD 20705, USA; [email protected] 5 National Agricultural Library, Agricultural Research Service, USDA, 10301 Baltimore Ave., Beltsville, MD 20705, USA; [email protected] * Correspondence: fi[email protected] Simple Summary: Genomic technologies are accumulating information about genes faster than ever before, and sequencing initiatives, such as the Earth BioGenome Project, i5k, and Ag100Pest Initiative, are expected to increase this rate of acquisition. However, if genomic sequencing is to be used for the improvement of human health, agriculture, and our understanding of biological systems, it is necessary to identify genes and understand how they contribute to biological outcomes. While there are several well-established workflows for assembling genomic sequences and identifying genes, understanding gene function is essential to create actionable knowledge. Moreover, this functional annotation process must be easily accessible and provide information at a genomic scale to keep up Citation: Saha, S.; Cooksey, A.M.; with new sequence data. We report a well-defined workflow for rapid functional annotation of whole Childers, A.K.; Poelchau, M.F.; proteomes to produce Gene Ontology and pathways information. -
Experimental Stream Application of Bti for Human Nuisance Black Fly
The University of Maine DigitalCommons@UMaine Technical Bulletins Maine Agricultural and Forest Experiment Station 10-1-1988 TB133: Experimental Stream Application of B.t.i. for Human Nuisance Black Fly Management in a Recreational Area K. Elizabeth Gibbs Rhonda J. Boyer Brian P. Molloy Dorothy A. Hutchins Follow this and additional works at: https://digitalcommons.library.umaine.edu/aes_techbulletin Part of the Entomology Commons Recommended Citation Gibbs, K.E., R.J. Boyer, B.P. Molloy, and D.A. Hutchins. 1988. Experimental stream applications of B.t.i. for human nuisance black fly management in a recreational area. Maine Agricultural Experiment Station Technical Bulletin 133. This Article is brought to you for free and open access by DigitalCommons@UMaine. It has been accepted for inclusion in Technical Bulletins by an authorized administrator of DigitalCommons@UMaine. For more information, please contact [email protected]. ISSN 0734-9556 Experimental Stream Applications of B.t.i. for Human Nuisance Black Fly Management in a Recreational Area MAINE AGRICULTURAL EXPERIMENT STATION UNIVERSITY OF MAINE Technical Bulletin 133 October 1988 Experimental Stream Applications of B.t.i. for Human Nuisance Black Fly Management in a Recreational Area by K. Elizabeth Gibbs Associate Professor: Department of Entomology Rhonda J. Boyer Graduate Student: Department of Entomology Brian P. Molloy Student Assistant: Department of Entomology Dorothy A. Hutchins Consulting Entomologist: P. O. Box 388, Fort Fairfield, ME 04742 MAINE AGRICULTURAL EXPERIMENT STATION UNIVERSITY OF MAINE ii MAES TECHNICAL BULLETIN 133 ACKNOWLEDGEMENTS The authors acknowledge with thanks the contributions of the following: P. H. Adler, K. R. -
Insect Chemical Ecology: Chemically Mediated Interactions and Novel Applications in Agriculture
Arthropod-Plant Interactions (2020) 14:671–684 https://doi.org/10.1007/s11829-020-09791-4 FORUM PAPER Insect chemical ecology: chemically mediated interactions and novel applications in agriculture Crispus M. Mbaluto1,2 · Pascal M. Ayelo3,4 · Alexandra G. Dufy5 · Anna L. Erdei6,7 · Anaїs K. Tallon7 · Siyang Xia8 · Gabriela Caballero‑Vidal9 · Urban Spitaler10,11 · Magdolna O. Szelényi6 · Gonçalo A. Duarte12 · William B. Walker III7 · Paul G. Becher7 Received: 5 May 2020 / Accepted: 16 October 2020 / Published online: 9 November 2020 © The Author(s) 2020 Abstract Insect chemical ecology (ICE) evolved as a discipline concerned with plant–insect interactions, and also with a strong focus on intraspecifc pheromone-mediated communication. Progress in this feld has rendered a more complete picture of how insects exploit chemical information in their surroundings in order to survive and navigate their world successfully. Simultaneously, this progress has prompted new research questions about the evolution of insect chemosensation and related ecological adaptations, molecular mechanisms that mediate commonly observed behaviors, and the consequences of chemi- cally mediated interactions in diferent ecosystems. Themed meetings, workshops, and summer schools are ideal platforms for discussing scientifc advancements as well as identifying gaps and challenges within the discipline. From the 11th to the 22nd of June 2018, the 11th annual PhD course in ICE was held at the Swedish University of Agricultural Sciences (SLU) Alnarp, Sweden. The course was made up of 35 student participants from 22 nationalities (Fig. 1a) as well as 32 lecturers. Lectures and laboratory demonstrations were supported by literature seminars, and four broad research areas were covered: (1) multitrophic interactions and plant defenses, (2) chemical communication focusing on odor sensing, processing, and behavior, (3) disease vectors, and (4) applied aspects of basic ICE research in agriculture. -
Invertebrates - Advanced
Invertebrates - Advanced Douglas Wilkin, Ph.D. Jennifer Blanchette Say Thanks to the Authors Click http://www.ck12.org/saythanks (No sign in required) AUTHORS Douglas Wilkin, Ph.D. To access a customizable version of this book, as well as other Jennifer Blanchette interactive content, visit www.ck12.org EDITOR Douglas Wilkin, Ph.D. CK-12 Foundation is a non-profit organization with a mission to reduce the cost of textbook materials for the K-12 market both in the U.S. and worldwide. Using an open-source, collaborative, and web-based compilation model, CK-12 pioneers and promotes the creation and distribution of high-quality, adaptive online textbooks that can be mixed, modified and printed (i.e., the FlexBook® textbooks). Copyright © 2016 CK-12 Foundation, www.ck12.org The names “CK-12” and “CK12” and associated logos and the terms “FlexBook®” and “FlexBook Platform®” (collectively “CK-12 Marks”) are trademarks and service marks of CK-12 Foundation and are protected by federal, state, and international laws. Any form of reproduction of this book in any format or medium, in whole or in sections must include the referral attribution link http://www.ck12.org/saythanks (placed in a visible location) in addition to the following terms. Except as otherwise noted, all CK-12 Content (including CK-12 Curriculum Material) is made available to Users in accordance with the Creative Commons Attribution-Non-Commercial 3.0 Unported (CC BY-NC 3.0) License (http://creativecommons.org/ licenses/by-nc/3.0/), as amended and updated by Creative Com- mons from time to time (the “CC License”), which is incorporated herein by this reference. -
National Biodiversity Strategy and Action Plan. Malawi
MALAWI GOVERNMENT Ministry of Energy, Mines, and Natural Resources National Biodiversity Strategy and Action Plan Environmental Affairs Department October 2006 Printed by THE GOVERNMENT PRINTER, Lilongwe, Malawi Recommended citation: Environmental Affairs Department 2006. National Biodiversity strategy and action plan. Published by Environmental Affairs Department Private Bag 394 Lilongwe 3 Malawi Tel: (+265) -1 -771 111 Fax: (+265) -1 -773 379 Printed in Malawi by THE GOVERNMENT PRINTER, Lilongwe, Malawi ISBN: 99908-26-54-9 2006 Environmental Affairs Department. All Rights Reserved. No part of this publication may be reproduced, stored in retrieval system, or translated in any form by any means, electronic, mechanical, photocopying, recording, or otherwise, without the prior permission of the Environmental Affairs Department. This publication is product of Environmental Affairs Department and was made possible through support provided by the Global Environment Facility (GEF), United Nations Environmental Programme (UNEP), The World Wildlife Fund for Nature (WWF), the African Centre for Technology Studies (ACTS), the World Conservation Union (IUCN) and the Norwegian Government. NBSAP drafting team Editors: Augustin C. Chikuni (PhD) Eston Y. Sambo (PhD) Chapter authors Humphrey Nzima Richard Phoya (Prof.) Moses Banda (PhD) Paul Munyenyembe (PhD) Wisdom Changadeya George Phiri (PhD) Kenyatta K. Nyirenda Vincent W. Saka (Prof.) James Chuma (Deceased) Ernest Misomali Judith Kamoto Yanira Ntupanyama FOREWORD Malawi’s Biodiversity is characterised by a large number of species, diverse habitats and ecosystems some of which are important sites of high endemism such as Lake Malawi, Nyika plateau and Mulanje mountain. Lake Malawi, covering about 20% of Malawi’s total area, boasts of over 700 endemic Cichlid species and contains 15% of world's freshwater fish. -
Zoogeographic Features of Black Fly Fauna (Diptera; Similiidae) of Palaeartic
CZU: 595.78:591.9 ZOOGEOGRAPHIC FEATURES OF BLACK FLY FAUNA (DIPTERA; SIMILIIDAE) OF PALAEARTIC 1VASILEVICH F.I., 2KAPLICH V.M., 3SUKHOMLIM YE.B 1 Moscow State Academy of Veterinary Medicine and Biotechnology named of K.I.Skrabin 2 Belorussian State Technological University 3 Eastern European National University named after Lecya Ukrainka Abstract. The representatitives of the sub-families Prosimuliinae and Similiinae which are widespread in Palaearctic have holarctic, holarctic-oriental, palaearctic, palaearctic-oriental, oriental- easternpalearctic and palaearctic-oriental-afrotropical-Australian prevalence. The core of Palaearctic simuliidofauna consists of the palaearctic habitats. Key words: Black flies, Fauna, Palaearctic, Simuliidae, Zoogeography. INTRODUCTION According to the reports of P.H. Adler R.W. Crosskey (2012) there are 725 species of Simuliidae from 38 genera, which comprises 33-38 per cent species of the world fauna black flies. The composition of the genera in the zoogeographic area is much more diverse (38 genera from 81 world faunas or 47%) than in the other ones. MATERIALS AND METHODS The materials from the Zoological Research Institute (Russian Academy of Sciences, S.- Petersburg), GNPO “NPTS NAN of Belorussia on Bioresources” (Minsk), Veterinary Institute in the town of Schwerin (Bezirksinstitut fur Veterinarwesen Schwerin) in 1991, later re-named the State Veterinary Agency (Landesamt MV LVLUA), Donetsk National University named after Lecya Ukrainka (Lutsk). The habitat classification is given after K.B. Gorodkov with additions. RESULTS AND DISCUTIONS The subfamily Prosimuliinae is represented by two tribes: Gymnopadini Rubtsov, 1954 and Prosimuliini Enderlein, 1921. The black flies of this sub-family inhabit Holarctic (Yankovsky A.V., 2002), the largest part of neotropical and afrotropical kingdoms (Adler P.H. -
Abstract Book
The 3rd International Simuliidae Symposium, including the 29 th meeting of the British Simuliid Group, the 7 th European Simuliidae Symposium and EMCA Blackfly working group Abstract book Vilnius September 9 th – 12 th , 2008 The 3rd International Simuliidae Symposium, including the 29 th meeting of the British Simuliid Group, the 7 th European Simuliidae Symposium and EMCA Blackfly working group Abstract book Vilnius September 9 th – 12 th , 2008 ISBN: 2008 09 08. Tiražas 100 egz. Spausdino VŠ Į “Vilniaus universiteto leidykla”, Universiteto g. 1, LT-01122 Vilnius Editors: Vincas B ūda and Andrius Petraši ūnas Programme and Scientific committee: Organizing committee: Prof. Peter Adler, USA Prof. Sigitas Pod ėnas Prof. Dr. Ladislav Jedli čka, Slovakia Prof. Vincas B ūda Dr. Robert A. Fusco, USA Dr. Milda Žygutien ė Dr. John Davies, UK Dr. Rasa Bernotien ė Dr. Rory Post, UK Dr. Jolanta Rimšait ė Dr. Adrian Pont, UK M. Sc. Giedr ė Višinskien ė Dr. Manfred Car, Austria M. Sc. Andrius Petraši ūnas Dr. Jan Emil Raastad, Norway M. Sc. Pavel Visar čuk Dr. Doreen Werner, Germany M. Sc. Aleksandra Ignjatovi ć Ćupina, Serbia Hosting institutions: Institute of Ecology of Vilnius University Lithuanian Entomological Society Sponsors: LIETUVOS VALSTYBINIS MOKSLO IR STUDIJ Ų FONDAS Lithuanian State Science and Studies Foundation 4 ORAL PRESENTATIONS 5 WORLD PERSPECTIVE OF SIMULIIDAE Peter H. Adler Department of Entomology, Soils & Plant Sciences, Clemson University, 114 Long Hall, Box 340315, Clemson, SC 29634, USA. E-mail: [email protected] The total number of living, described species of black flies in the world is 2019. Black flies, therefore, represent 0.2% of all described species of insects and 1.3% of all described species of Diptera in the world. -
Workflows for Rapid Functional Annotation of Diverse Arthropod Genomes
bioRxiv preprint doi: https://doi.org/10.1101/2021.06.12.448177; this version posted June 13, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. This article is a US Government work. It is not subject to copyright under 17 USC 105 and is also made available for use under a CC0 license. Workflows for rapid functional annotation of diverse arthropod genomes Surya Saha 1,2*, Amanda M Cooksey2,3, Anna K Childers4, Monica F Poelchau5, Fiona M McCarthy2. 1 Boyce Thompson Institute, 533 Tower Rd., Ithaca, NY 14853 USA. 2 School of Animal and Comparative Biomedical Sciences, 1117 E. Lowell Street, Tucson AZ 85721 USA. 3 CyVerse, BioScience Research Laboratories, 1230 N. Cherry Ave., Tucson, AZ 85721 USA. 4 USDA, Agricultural Research Service, Beltsville Agricultural Research Center, Bee Research Laboratory, 10300 Baltimore Avenue, Beltsville, MD 20705, USA 5 USDA, Agricultural Research Service, National Agricultural Library, 10301 Baltimore Avenue, Beltsville, MD 20705, USA. Simple summary Genomic technologies are accumulating information about genes at a faster rate than ever before, and sequencing initiatives like the Earth Biogenome Project, i5k and Ag100Pest are expected to increase this rate of acquisition. However, if genomic sequencing is to be used for improvement of human health, agriculture and our understanding of biological systems, it is necessary to identify genes and understand how they contribute to biological outcomes. While there are several well-established workflows for assembling genomic sequences and identifying genes, understanding gene function is essential to create actionable knowledge. Moreover this functional annotation process must be easily accessible and provide information at a genomic scale to keep up with new sequence data. -
Comparative Morphology of Idiomyces and Its Possible Allies Diplomyces, Sandersoniomyces, Symplectromyces, and Tetratomyces (Ascomycetes: Laboulbeniales) Richard K
Aliso: A Journal of Systematic and Evolutionary Botany Volume 10 | Issue 3 Article 2 1983 Comparative Morphology of Idiomyces and its Possible Allies Diplomyces, Sandersoniomyces, Symplectromyces, and Tetratomyces (Ascomycetes: Laboulbeniales) Richard K. Benjamin Follow this and additional works at: http://scholarship.claremont.edu/aliso Part of the Botany Commons Recommended Citation Benjamin, Richard K. (1983) "Comparative Morphology of Idiomyces and its Possible Allies Diplomyces, Sandersoniomyces, Symplectromyces, and Tetratomyces (Ascomycetes: Laboulbeniales)," Aliso: A Journal of Systematic and Evolutionary Botany: Vol. 10: Iss. 3, Article 2. Available at: http://scholarship.claremont.edu/aliso/vol10/iss3/2 ALISO I 0(3), 1983, pp. 345-381 COMPARATIVE MORPHOLOGY OF IDIOMYCES AND ITS POSSIBLE ALLIES DIPLOMYCES, SANDERSONIOMYCES, SYMPLECTROMYCES, AND TERATOMYCES (ASCOMYCETES: LABOULBENIALES) Richard K. Benjamin Abstract.-Pertinent stages of development of the receptacle, primary and secondary appendages, and perithecium of Idiomyces peyritschii are de scribed and illustrated and comparison is made between this species and the type species of Diplomyces, Sandersoniomyces, Symplectromyces, and Teratomyces for which early stages of receptacular and appendage devel opment also are described and illustrated. Possible close relationship of these genera with one another is examined in the light not only of morphological similarities and differences but also of host range. It is concluded that Di plomyces, Sandersoniomyces, Symplectromyces, and Teratomyces do indeed constitute a closely allied group of genera. However, the gap between this alliance and Idiomyces is deemed great enough to warrant their separation into separate tribes within the Laboulbeniales, proposed by Thaxter in 1908, i.e., ldiomyceteae for Idiomyces and Teratomyceteae for the other four gen era. INTRODUCTION Idiomyces peyritschii was described by Thaxter (1893) as the type of a new genus of Laboulbeniales parasitizing a staphylinid beetle, De/easter dichrous (Grav.), collected in Germany. -
Esc/Esab Jam 2012 Presentation Abstracts
ESC/ESAB JAM 2012 PRESENTATION ABSTRACTS ESC/ESAB JAM 2012 PRESENTATION ABSTRACTS, listed alphabetically by first author 1. Abdelghany, A., D. Suthisut, and P.G. Fields Cold tolerance of the warehouse beetle, Trogoderma variabile. The cold tolerance of Trogoderma variabile from lowest to highest was egg, adult, 3rd instar larvae, pupae and 5th instar larvae. Acclimation at 15 to 5°C over 6 weeks increased cold hardiness in 5th instar larvae from 32 to 240 d (Lethal Time for 95% mortality). Diapause increased cold tolerance. The supercooling point varied from a high of -9.9°C for 5th instar larvae non-acclimated to a low of -23.7°C for 5th instar larvae cold-acclimated. 2. Abram, P.K., T. Haye, P.G. Mason, N. Cappuccino, G. Boivin, and U. Kuhlmann The biology of Synopeas myles, a parasitoid of the swede midge, Contarinia nasturtii. Despite their importance as natural enemies for many species of phytophagous gall midges, very little is known about the biology of parasitoid wasps in the subfamily Platygastrinae. We conducted the first thorough investigations of the biological relationships between the platygastrid parasitoid Synopeas myles Walker (Hymenoptera: Platygastridae) and its host Contarinia nasturtii Kieffer (Diptera: Cecidomyiidae) including host stage suitability, immature development, and host discrimination. 3. Adams, E.M., B. Roitberg, and R.S. Vernon Permeability of mesh exclusion fencing to ground beetle (Coleoptera: Carabidae) predators. The use of mesh exclusion fencing to control cabbage maggot (Delia radicum) could also exclude ground beetles, important predators of the pest. Laboratory experiments evaluated the ability of various ground beetles to cross the fence. -
Anicdotes #15, Volume Two of Australian Beetles, Edited by Pentatomoidea Diagnostics Workshop Held at the University of Pentatomoidea Diagnostics Workshop
1 ISSUE 16 • April 2020 The official newsletter of the Australian National Insect Collection CSIRO NATIONAL FACILITIES AND COLLECTIONS www.csiro.au INSIDE THIS ISSUE The Drought, Bushfire and Pandemic Issue David Yeates, Director The Drought, Bushfire and Pandemic Issue .................1 As this issue is being prepared, Australia and the world heads into by hailstorms on Black Mountain, burnt Welcome to New Staff ................................................. 2 uncharted waters as they grapple with the COVID-19 pandemic. by bushfires in Monga National Park and Dr Adam Ślipiński: Australia’s Top Zoologist................. 3 We have not seen this kind of upheaval in world health systems washed away by local flooding in Budderoo and the global economy since the Second World War. Many of National Park near Robertson. We hope New Beetle Books ........................................................ 3 us are working from home, and all of us are practicing social that this combination of processes does New Moth Book ........................................................... 4 distancing measures when at home and at work. All of our not affect our domestic fieldwork in domestic and international travel for work, including travel future. Keith Bayless and Olivia Evangelista Beetle Explorations 2019–2020 ................................... 5 to the International Congress of Entomology in Finland this conducted much more successful field David Yeates South Island New Zealand Expedition .......................... 6 year, has been cancelled. Our Fullbright scholar working on work in the South Island of New Zealand, grasshoppers, Hojun Song from Texas A&M University, has had uninterrupted by any such disasters. Seasonal Malaise Trapping Update 2019—2020 .......... 7 to return to the USA. All of our affiliates have been invited to This issue also includes articles on a Bush Blitz treehopper work from home, or take a break, until we can get some more Bush Blitz Taxonomy Research Projects 2020—2021 .. -
Nonindigenous Aquatic and Selected Terrestrial Species of Florida
Nonindigenous Aquatic and Selected Terrestrial Species of Florida Status, Pathway and Time of Introduction, Present Distribution, and Significant Ecological and Economic Effects James A. McCann LoriN. Arkin James D. Williams National Biological Service Southeastern Biological Science Center 7920 N.W. 71st Street Gainesville, Florida 32653 1 United States Department of the Interior NATIONAL BIOLOGICAL StlRVE:~ SERVICE November 28, 1995 MEMORANDUM To: Victor Ramey, IFAS, University of Florida From: Center Director, SBSC Subject: Publication of McCann report on Aquatic Nonindigenous Species of Florida Dr. McCann has prepared a very good compilation of information on aquatic nonindigenous species of Florida. The Florida report has gone through an in house peer review process for publication. Due to budget cuts we will not be able to publish it in house. Anyone who can publish this is free to do so. Contents Preface ......... ~........................................ ...... ............. 4 Abstract ..................................................................... 5 Definitions of Terms ............................. .... ....................... 7 Introductions and Survival of Nonindigenous Species in Freshwater Systems ........... 9 Subtropical Climate ................... ................................. 10 Pathways of Introduction ........................................ ........ 10 Industries that Import Nonindigenous Species ................................ 12 Human Population Growth ............................................... 12