Marine Ecology
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Article Evolutionary Dynamics of the OR Gene Repertoire in Teleost Fishes
bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Article Evolutionary dynamics of the OR gene repertoire in teleost fishes: evidence of an association with changes in olfactory epithelium shape Maxime Policarpo1, Katherine E Bemis2, James C Tyler3, Cushla J Metcalfe4, Patrick Laurenti5, Jean-Christophe Sandoz1, Sylvie Rétaux6 and Didier Casane*,1,7 1 Université Paris-Saclay, CNRS, IRD, UMR Évolution, Génomes, Comportement et Écologie, 91198, Gif-sur-Yvette, France. 2 NOAA National Systematics Laboratory, National Museum of Natural History, Smithsonian Institution, Washington, D.C. 20560, U.S.A. 3Department of Paleobiology, National Museum of Natural History, Smithsonian Institution, Washington, D.C., 20560, U.S.A. 4 Independent Researcher, PO Box 21, Nambour QLD 4560, Australia. 5 Université de Paris, Laboratoire Interdisciplinaire des Energies de Demain, Paris, France 6 Université Paris-Saclay, CNRS, Institut des Neurosciences Paris-Saclay, 91190, Gif-sur- Yvette, France. 7 Université de Paris, UFR Sciences du Vivant, F-75013 Paris, France. * Corresponding author: e-mail: [email protected]. !1 bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Abstract Teleost fishes perceive their environment through a range of sensory modalities, among which olfaction often plays an important role. -
Order GASTEROSTEIFORMES PEGASIDAE Eurypegasus Draconis
click for previous page 2262 Bony Fishes Order GASTEROSTEIFORMES PEGASIDAE Seamoths (seadragons) by T.W. Pietsch and W.A. Palsson iagnostic characters: Small fishes (to 18 cm total length); body depressed, completely encased in Dfused dermal plates; tail encircled by 8 to 14 laterally articulating, or fused, bony rings. Nasal bones elongate, fused, forming a rostrum; mouth inferior. Gill opening restricted to a small hole on dorsolat- eral surface behind head. Spinous dorsal fin absent; soft dorsal and anal fins each with 5 rays, placed posteriorly on body. Caudal fin with 8 unbranched rays. Pectoral fins large, wing-like, inserted horizon- tally, composed of 9 to 19 unbranched, soft or spinous-soft rays; pectoral-fin rays interconnected by broad, transparent membranes. Pelvic fins thoracic, tentacle-like,withI spine and 2 or 3 unbranched soft rays. Colour: in life highly variable, apparently capable of rapid colour change to match substrata; head and body light to dark brown, olive-brown, reddish brown, or almost black, with dorsal and lateral surfaces usually darker than ventral surface; dorsal and lateral body surface often with fine, dark brown reticulations or mottled lines, sometimes with irregular white or yellow blotches; tail rings often encircled with dark brown bands; pectoral fins with broad white outer margin and small brown spots forming irregular, longitudinal bands; unpaired fins with small brown spots in irregular rows. dorsal view lateral view Habitat, biology, and fisheries: Benthic, found on sand, gravel, shell-rubble, or muddy bottoms. Collected incidentally by seine, trawl, dredge, or shrimp nets; postlarvae have been taken at surface lights at night. -
The Genome of the Gulf Pipefish Enables Understanding of Evolutionary Innovations C
Small et al. Genome Biology (2016) 17:258 DOI 10.1186/s13059-016-1126-6 RESEARCH Open Access The genome of the Gulf pipefish enables understanding of evolutionary innovations C. M. Small1†, S. Bassham1†, J. Catchen1,2†, A. Amores3, A. M. Fuiten1, R. S. Brown1,4, A. G. Jones5 and W. A. Cresko1* Abstract Background: Evolutionary origins of derived morphologies ultimately stem from changes in protein structure, gene regulation, and gene content. A well-assembled, annotated reference genome is a central resource for pursuing these molecular phenomena underlying phenotypic evolution. We explored the genome of the Gulf pipefish (Syngnathus scovelli), which belongs to family Syngnathidae (pipefishes, seahorses, and seadragons). These fishes have dramatically derived bodies and a remarkable novelty among vertebrates, the male brood pouch. Results: We produce a reference genome, condensed into chromosomes, for the Gulf pipefish. Gene losses and other changes have occurred in pipefish hox and dlx clusters and in the tbx and pitx gene families, candidate mechanisms for the evolution of syngnathid traits, including an elongated axis and the loss of ribs, pelvic fins, and teeth. We measure gene expression changes in pregnant versus non-pregnant brood pouch tissue and characterize the genomic organization of duplicated metalloprotease genes (patristacins) recruited into the function of this novel structure. Phylogenetic inference using ultraconserved sequences provides an alternative hypothesis for the relationship between orders Syngnathiformes and Scombriformes. Comparisons of chromosome structure among percomorphs show that chromosome number in a pipefish ancestor became reduced via chromosomal fusions. Conclusions: The collected findings from this first syngnathid reference genome open a window into the genomic underpinnings of highly derived morphologies, demonstrating that de novo production of high quality and useful reference genomes is within reach of even small research groups. -
“The Secret Lives of Seahorses” Exhibit Press Kit Click on Headings Below to Go Directly to a Specific Page of the Press Kit
“The Secret Lives of Seahorses” Exhibit Press Kit Click on headings below to go directly to a specific page of the press kit. 1. Main Exhibit News Release 2. Exhibit Fact Sheet 3. Exhibit Gallery Tour 4. Exhibit Animals 5. Seahorse Conservation News Release NEWS RELEASE FOR IMMEDIATE RELEASE For information contact: March 23, 2009 Angela Hains: (831) 647-6804; [email protected] Karen Jeffries: (831) 644-7548; [email protected] Ken Peterson: (831) 648-4922; [email protected] DURING ITS SILVER ANNIVERSARY YEAR, AQUARIUM UNVEILS “THE SECRET LIVES OF SEAHORSES” ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ New special exhibition offers an intimate look at these fascinating, fragile fishes Seahorses have been celebrated in art, literature and mythology for centuries, so you’d think we know a lot about them. In “The Secret Lives of Seahorses,” the Monterey Bay Aquarium’s new special exhibition, you’ll discover that nothing could be further from the truth. Beginning April 6, more than 15 species of seahorses, sea dragons and pipefish will beckon visitors into the elusive world of these charismatic creatures. The Secret Lives of Seahorses highlights the varied habitats in which seahorses and their relatives live, and shares important stories about the threats they face in the wild. “Seahorses are wonderful ambassadors for ocean conservation because they live in the most endangered habitats in the world – coral reefs, sea grass beds and mangrove forests,” said Ava Ferguson, senior exhibit developer for The Secret Lives of Seahorses. “When you save a seahorse, you also save some of Earth’s most precious marine habitats.” Through wrought-iron gates, visitors will enter the first gallery, “Seahorses and Kin,” and meet the seahorse family: fishes that have fused jaws and bony plates in place of the scales normally associated with fish. -
Howe Washington 0250E 11254.Pdf (2.780Mb)
Detrital shadows: Evaluating landscape and species effects on detritus-based food web connectivity in Pacific Northwest estuaries Emily Russell Howe A dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy University of Washington 2012 Reading Committee: Charles Simenstad, Chair Daniel Schindler Andrea Ogston Program Authorized to Offer Degree: School of Aquatic and Fishery Sciences ©2012 Emily Russell Howe ii iii University of Washington Abstract Detrital shadows: evaluating landscape and species effects on detritus- based estuarine food web connectivity in Pacific Northwest estuaries Emily Russell Howe Chairperson of the Supervisory Committee: Charles A. Simenstad School of Aquatic and Fishery Sciences Estuaries are inherently open systems, linking together terrestrial, aquatic, and marine ecosystems. With fluid, permeable transitions (ecotones) marking the boundaries between these ecosystems, estuaries subsidize coastal food web productivity through the mediation of nutrient, material, and energy flux across ecosystem boundaries. Mechanisms governing the strength and scale of estuarine detritus-based food web connectivity, however, are poorly understood. For example, early estuarine descriptions suggest that extensive mixing and large-scale transport of organic matter occurs within estuarine systems, while recent evidence in estuarine detritus-based food webs has shown strong spatial gradients in the sources of organic matter assimilated by consumers across a diversity of scales. This suggests food webs are spatially compartmentalized in some estuaries, but strongly connected in others. Given that estuaries have experienced extensive structural and hydrological alterations over the past century, research describing the mechanisms of estuarine-supported subsidies is necessary if we are to provide informed guidelines for the conservation and restoration of estuaries and estuarine functions. -
Marine Protected Species Identification Guide
Department of Primary Industries and Regional Development Marine protected species identification guide June 2021 Fisheries Occasional Publication No. 129, June 2021. Prepared by K. Travaille and M. Hourston Cover: Hawksbill turtle (Eretmochelys imbricata). Photo: Matthew Pember. Illustrations © R.Swainston/www.anima.net.au Bird images donated by Important disclaimer The Chief Executive Officer of the Department of Primary Industries and Regional Development and the State of Western Australia accept no liability whatsoever by reason of negligence or otherwise arising from the use or release of this information or any part of it. Department of Primary Industries and Regional Development Gordon Stephenson House 140 William Street PERTH WA 6000 Telephone: (08) 6551 4444 Website: dpird.wa.gov.au ABN: 18 951 343 745 ISSN: 1447 - 2058 (Print) ISBN: 978-1-877098-22-2 (Print) ISSN: 2206 - 0928 (Online) ISBN: 978-1-877098-23-9 (Online) Copyright © State of Western Australia (Department of Primary Industries and Regional Development), 2021. ii Marine protected species ID guide Contents About this guide �������������������������������������������������������������������������������������������1 Protected species legislation and international agreements 3 Reporting interactions ���������������������������������������������������������������������������������4 Marine mammals �����������������������������������������������������������������������������������������5 Relative size of cetaceans �������������������������������������������������������������������������5 -
Underwater Photography Jul/Aug 2016 Issue 91
Underwater Photography Jul/Aug 2016 Issue 91 The magazine that doesn’t have to say anything here An experience without equal At Wakatobi, we take great pride in providing the ultimate in exclusive and personalised service. Our dive staff and private guides ensure your in-water experiences are perfectly matched to your abilities and interests. While at the resort, or on board our luxury dive yacht Pelagian, you need only ask and we will gladly provide any service or facility within our power. For all these reasons and more, Wakatobi takes top honors among discerning divers and photographers. “Simply put, it doesn’t get any better than this. Everything is about service and maximizing your diving experience. The dives were amazing, and the dive and hotel staff are first class. They will accommodate any request, but you hardly need to make any since they have thought of essentially everything!” Dr. Jim & Laurie Benjamin www.wakatobi.com Contents Underwater Photography 3 Editorial A web magazine UwP91 Jul/Aug 2016 4 News Travel & Events 34 Glowdive dome lighting by Phil Rudin 75 Bimini and Cat sharks by Albert Kok 13 New Products 56 Cave photography by Jean-Michel Machefert 37 Macro etiquette by Alex Tattersall 79 Seahorses and Pipefish by Mark Webster 62 Liveaboards 85 Book review 27 Pelican Air 1535 case by Colin Marshall by Peter Rowlands by Phil Rudin 76 Parting Shot 45 Fluo lighting by Peter Rowlands by Steve Miller Cover shot by Bassem Jamour Underwater Photography 2001 - 2016 29 Sony A6300 review © PR Productions 69 Secrets of the forest Publisher/Editor Peter Rowlands by Jim Decker 50 Monaco by Tom Burd www.pr-productions.co.uk by Bassem Jamour [email protected] Issue 91/3 www.uwpmag.com 4k stills in agreement that such practices are Editorial no longer acceptable. -
South-East Marine Region Profile
South-east marine region profile A description of the ecosystems, conservation values and uses of the South-east Marine Region June 2015 © Commonwealth of Australia 2015 South-east marine region profile: A description of the ecosystems, conservation values and uses of the South-east Marine Region is licensed by the Commonwealth of Australia for use under a Creative Commons Attribution 3.0 Australia licence with the exception of the Coat of Arms of the Commonwealth of Australia, the logo of the agency responsible for publishing the report, content supplied by third parties, and any images depicting people. For licence conditions see: http://creativecommons.org/licenses/by/3.0/au/ This report should be attributed as ‘South-east marine region profile: A description of the ecosystems, conservation values and uses of the South-east Marine Region, Commonwealth of Australia 2015’. The Commonwealth of Australia has made all reasonable efforts to identify content supplied by third parties using the following format ‘© Copyright, [name of third party] ’. Front cover: Seamount (CSIRO) Back cover: Royal penguin colony at Finch Creek, Macquarie Island (Melinda Brouwer) B / South-east marine region profile South-east marine region profile A description of the ecosystems, conservation values and uses of the South-east Marine Region Contents Figures iv Tables iv Executive Summary 1 The marine environment of the South-east Marine Region 1 Provincial bioregions of the South-east Marine Region 2 Conservation values of the South-east Marine Region 2 Key ecological features 2 Protected species 2 Protected places 2 Human activities and the marine environment 3 1. -
Wheatstone Project Offshore Facilities and Produced Formation Water Discharge Management Plan: Stage 1
Wheatstone Project Offshore Facilities and Produced Formation Water Discharge Management Plan: Stage 1 Document No: WS0-0000-HES-PLN-CVX-000-00101-000 Revision: 2 Revision Date: 21-Dec-2015 IP Security: Public © Chevron Australia Pty Ltd Wheatstone Project Document No: WS0-0000-HES-PLN-CVX-000-00101-000 Offshore Facilities and Produced Formation Water Discharge Revision: 2 Management Plan: Stage 1 Revision Date: 21/12/2015 TABLE OF CONTENTS ACRONYMS, ABBREVIATIONS AND TERMINOLOGY ........................................................ 3 1.0 BACKGROUND .............................................................................................................. 5 1.1 Project Overview ................................................................................................... 5 1.2 Proponent .............................................................................................................. 5 1.3 Environmental Approvals ....................................................................................... 7 1.4 Objectives .............................................................................................................. 7 1.5 Scope .................................................................................................................... 8 1.6 Public Availability ................................................................................................... 8 2.0 PROJECT DESCRIPTION ............................................................................................. 9 2.1 Overview ............................................................................................................... -
Fisheries Long Term Monitoring Program
Queensland the Smart State Fisheries Long Term Monitoring Program Syngnathids in the East Coast Trawl Fishery: a review and trawl survey November 2005 November Information Series ISSN 0727-6273 QI05091 Fisheries Long Term Monitoring Program Syngnathids in the East Coast Trawl Fishery: a review and trawl survey November 2005 November Natalie Dodt Department of Primary Industries and Fisheries Queensland ISSN 0727-6273 QI05091 This document may be cited as: Dodt, N. (2005). ‘Fisheries Long Term Monitoring Program: Syngnathids in the East Coast Trawl Fishery: a review and trawl survey’. Department of Primary Industries and Fisheries, Queensland. Acknowledgments: Thanks are due to the commercial fishermen John and Gavin McIlwain for their willingness to undertake the survey work. I would like to acknowledge the Long Term Monitoring Program team members and fisheries observers for collecting the samples at sea and processing them in the laboratory. I am grateful to Malcolm Dunning, Eddie Jebreen and Olivia Whybird, all of whom reviewed previous versions of this report. Thanks also to the Assessment and Monitoring staff, especially Len Olyott for help with data retrievals, mapping and database design. I am very grateful to David Mayer for his assistance and advice with the data analysis. I would also like to acknowledge Jeff Johnson from the Queensland Museum for his assistance in identification of syngnathids. Particular thanks must go to Jonathan Staunton Smith for his support and assistance in every facet of this project. General disclaimer: -
SAIA List of Ecologically Unsustainable Species
SAIA List of Ecologically Unsustainable Species Note The aquarium fishery in Southeast Asia contributes to the destruction of coral reefs. Although illegal, the use of cyanide to stun fish is still widespread, especially for species that seek shelter between coral branches, in holes, and among rocks (like damsels or gobies), but also those occurring at greater depths (e.g., dwarf angels, some anthias) or the ones fetching high prices (like angelfish or surgeonfish). While ideally the dosage is only intended to stun the targeted fish, it is often sufficient to kill the non-targeted invertebrates building the reef. As such, is a destructive fishing method, banned by regulation in Indonesia and the Philippines. Fish caught with cyanide are a product of illegal fishing. According to EU Regulation, the import of products from illegal, unreported, and unregulated (IUU) fishing is prohibited.* Similarly, the Lacey Act, a conservation law in the United States, prohibits trade in wildlife, fish, and plants that have been illegally taken, possessed, transported, or sold. However, enforcing these laws is difficult because there is insufficient control in both the countries of origin and in the markets. Therefore, the likelihood of purchasing a product from illegal fishing is real. Ask your dealer about the origin of the offered animals and insist on sustainable fishing methods! Inadequate or deficient fishery management is another, often underestimated, problem of aquarium fisheries in South East Asia. Many fish come from unreported and unregulated fisheries. For most coral fish species, but also invertebrates, no data exist. The status of local populations and catch volumes are thus unknown. -
A Global Revision of the Seahorses Hippocampus Rafinesque 1810 (Actinopterygii: Syngnathiformes): Taxonomy and Biogeography with Recommendations for Further Research
Zootaxa 4146 (1): 001–066 ISSN 1175-5326 (print edition) http://www.mapress.com/j/zt/ Monograph ZOOTAXA Copyright © 2016 Magnolia Press ISSN 1175-5334 (online edition) http://doi.org/10.11646/zootaxa.4146.1.1 http://zoobank.org/urn:lsid:zoobank.org:pub:35E0DECB-20CE-4295-AE8E-CB3CAB226C70 ZOOTAXA 4146 A global revision of the Seahorses Hippocampus Rafinesque 1810 (Actinopterygii: Syngnathiformes): Taxonomy and biogeography with recommendations for further research SARA A. LOURIE1,2, RILEY A. POLLOM1 & SARAH J. FOSTER1, 3 1Project Seahorse, Institute for the Oceans and Fisheries, The University of British Columbia, 2202 Main Mall, Vancouver, BC, V6T 1Z4, Canada 2Redpath Museum, 859 Sherbrooke Street West, Montreal, Quebec, H3A 2K6, Canada 3Corresponding author. E-mail: [email protected] Magnolia Press Auckland, New Zealand Accepted by E. Hilton: 2 Jun. 2016; published: 29 Jul. 2016 SARA A. LOURIE, RILEY A. POLLOM & SARAH J. FOSTER A global revision of the Seahorses Hippocampus Rafinesque 1810 (Actinopterygii: Syngnathiformes): Taxonomy and biogeography with recommendations for further research (Zootaxa 4146) 66 pp.; 30 cm. 1 Aug. 2016 ISBN 978-1-77557-509-2 (paperback) ISBN 978-1-77557-534-4 (Online edition) FIRST PUBLISHED IN 2016 BY Magnolia Press P.O. Box 41-383 Auckland 1346 New Zealand e-mail: [email protected] http://www.mapress.com/j/zt © 2016 Magnolia Press All rights reserved. No part of this publication may be reproduced, stored, transmitted or disseminated, in any form, or by any means, without prior written permission from the publisher, to whom all requests to reproduce copyright material should be directed in writing.