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Article Evolutionary Dynamics of the OR Gene Repertoire in Teleost Fishes
bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Article Evolutionary dynamics of the OR gene repertoire in teleost fishes: evidence of an association with changes in olfactory epithelium shape Maxime Policarpo1, Katherine E Bemis2, James C Tyler3, Cushla J Metcalfe4, Patrick Laurenti5, Jean-Christophe Sandoz1, Sylvie Rétaux6 and Didier Casane*,1,7 1 Université Paris-Saclay, CNRS, IRD, UMR Évolution, Génomes, Comportement et Écologie, 91198, Gif-sur-Yvette, France. 2 NOAA National Systematics Laboratory, National Museum of Natural History, Smithsonian Institution, Washington, D.C. 20560, U.S.A. 3Department of Paleobiology, National Museum of Natural History, Smithsonian Institution, Washington, D.C., 20560, U.S.A. 4 Independent Researcher, PO Box 21, Nambour QLD 4560, Australia. 5 Université de Paris, Laboratoire Interdisciplinaire des Energies de Demain, Paris, France 6 Université Paris-Saclay, CNRS, Institut des Neurosciences Paris-Saclay, 91190, Gif-sur- Yvette, France. 7 Université de Paris, UFR Sciences du Vivant, F-75013 Paris, France. * Corresponding author: e-mail: [email protected]. !1 bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Abstract Teleost fishes perceive their environment through a range of sensory modalities, among which olfaction often plays an important role. -
South-East Marine Region Profile
South-east marine region profile A description of the ecosystems, conservation values and uses of the South-east Marine Region June 2015 © Commonwealth of Australia 2015 South-east marine region profile: A description of the ecosystems, conservation values and uses of the South-east Marine Region is licensed by the Commonwealth of Australia for use under a Creative Commons Attribution 3.0 Australia licence with the exception of the Coat of Arms of the Commonwealth of Australia, the logo of the agency responsible for publishing the report, content supplied by third parties, and any images depicting people. For licence conditions see: http://creativecommons.org/licenses/by/3.0/au/ This report should be attributed as ‘South-east marine region profile: A description of the ecosystems, conservation values and uses of the South-east Marine Region, Commonwealth of Australia 2015’. The Commonwealth of Australia has made all reasonable efforts to identify content supplied by third parties using the following format ‘© Copyright, [name of third party] ’. Front cover: Seamount (CSIRO) Back cover: Royal penguin colony at Finch Creek, Macquarie Island (Melinda Brouwer) B / South-east marine region profile South-east marine region profile A description of the ecosystems, conservation values and uses of the South-east Marine Region Contents Figures iv Tables iv Executive Summary 1 The marine environment of the South-east Marine Region 1 Provincial bioregions of the South-east Marine Region 2 Conservation values of the South-east Marine Region 2 Key ecological features 2 Protected species 2 Protected places 2 Human activities and the marine environment 3 1. -
Fisheries Long Term Monitoring Program
Queensland the Smart State Fisheries Long Term Monitoring Program Syngnathids in the East Coast Trawl Fishery: a review and trawl survey November 2005 November Information Series ISSN 0727-6273 QI05091 Fisheries Long Term Monitoring Program Syngnathids in the East Coast Trawl Fishery: a review and trawl survey November 2005 November Natalie Dodt Department of Primary Industries and Fisheries Queensland ISSN 0727-6273 QI05091 This document may be cited as: Dodt, N. (2005). ‘Fisheries Long Term Monitoring Program: Syngnathids in the East Coast Trawl Fishery: a review and trawl survey’. Department of Primary Industries and Fisheries, Queensland. Acknowledgments: Thanks are due to the commercial fishermen John and Gavin McIlwain for their willingness to undertake the survey work. I would like to acknowledge the Long Term Monitoring Program team members and fisheries observers for collecting the samples at sea and processing them in the laboratory. I am grateful to Malcolm Dunning, Eddie Jebreen and Olivia Whybird, all of whom reviewed previous versions of this report. Thanks also to the Assessment and Monitoring staff, especially Len Olyott for help with data retrievals, mapping and database design. I am very grateful to David Mayer for his assistance and advice with the data analysis. I would also like to acknowledge Jeff Johnson from the Queensland Museum for his assistance in identification of syngnathids. Particular thanks must go to Jonathan Staunton Smith for his support and assistance in every facet of this project. General disclaimer: -
A Global Revision of the Seahorses Hippocampus Rafinesque 1810 (Actinopterygii: Syngnathiformes): Taxonomy and Biogeography with Recommendations for Further Research
Zootaxa 4146 (1): 001–066 ISSN 1175-5326 (print edition) http://www.mapress.com/j/zt/ Monograph ZOOTAXA Copyright © 2016 Magnolia Press ISSN 1175-5334 (online edition) http://doi.org/10.11646/zootaxa.4146.1.1 http://zoobank.org/urn:lsid:zoobank.org:pub:35E0DECB-20CE-4295-AE8E-CB3CAB226C70 ZOOTAXA 4146 A global revision of the Seahorses Hippocampus Rafinesque 1810 (Actinopterygii: Syngnathiformes): Taxonomy and biogeography with recommendations for further research SARA A. LOURIE1,2, RILEY A. POLLOM1 & SARAH J. FOSTER1, 3 1Project Seahorse, Institute for the Oceans and Fisheries, The University of British Columbia, 2202 Main Mall, Vancouver, BC, V6T 1Z4, Canada 2Redpath Museum, 859 Sherbrooke Street West, Montreal, Quebec, H3A 2K6, Canada 3Corresponding author. E-mail: [email protected] Magnolia Press Auckland, New Zealand Accepted by E. Hilton: 2 Jun. 2016; published: 29 Jul. 2016 SARA A. LOURIE, RILEY A. POLLOM & SARAH J. FOSTER A global revision of the Seahorses Hippocampus Rafinesque 1810 (Actinopterygii: Syngnathiformes): Taxonomy and biogeography with recommendations for further research (Zootaxa 4146) 66 pp.; 30 cm. 1 Aug. 2016 ISBN 978-1-77557-509-2 (paperback) ISBN 978-1-77557-534-4 (Online edition) FIRST PUBLISHED IN 2016 BY Magnolia Press P.O. Box 41-383 Auckland 1346 New Zealand e-mail: [email protected] http://www.mapress.com/j/zt © 2016 Magnolia Press All rights reserved. No part of this publication may be reproduced, stored, transmitted or disseminated, in any form, or by any means, without prior written permission from the publisher, to whom all requests to reproduce copyright material should be directed in writing. -
Biologija Roda Hippocampus Biology of Genus Hippocampus
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by University of Zagreb Repository SVEUČILIŠTE U ZAGREBU PRIRODOSLOVNO–MATEMATIČKI FAKULTET BIOLOŠKI ODSJEK SEMINARSKI RAD Biologija roda Hippocampus Biology of genus Hippocampus Lana Đud Preddiplomski studij biologije (Undergraduate Study of Biology) Mentor: prof. dr. sc. Milorad Mrakovčić Zagreb, 2009. Sadržaj 1. Uvod......................................................................................................................................3 2. Sistematski položaj................................................................................................................4 2.1. Evolucija.................................................................................................................5 3. Morfološke i anatomske karakteristike .................................................................................6 3.1. Dijelovi glave .........................................................................................................6 3.2. Dijelovi trupa..........................................................................................................7 3.3. Dijelovi repa ...........................................................................................................7 3.4. Spolni dimorfizam..................................................................................................7 4. Područja rasprostranjenosti i stanište ....................................................................................8 -
Australia's Coral
Australia’s Coral Sea: A Biophysical Profile 2011 Dr Daniela Ceccarelli 2011 Dr Daniela Ceccarelli Coral Sea: A Biophysical Profile Australia’s Australia’s Coral Sea A Biophysical Profile Dr. Daniela Ceccarelli August 2011 Australia’s Coral Sea: A Biophysical Profile Photography credits Author: Dr. Daniela M. Ceccarelli Front and back cover: Schooling great barracuda © Jurgen Freund Dr. Daniela Ceccarelli is an independent marine ecology Page 1: South West Herald Cay, Coringa-Herald Nature Reserve © Australian Customs consultant with extensive training and experience in tropical marine ecosystems. She completed a PhD in coral reef ecology Page 2: Coral Sea © Lucy Trippett at James Cook University in 2004. Her fieldwork has taken Page 7: Masked booby © Dr. Daniela Ceccarelli her to the Great Barrier Reef and Papua New Guinea, and to remote reefs of northwest Western Australia, the Coral Sea Page 12: Humphead wrasse © Tyrone Canning and Tuvalu. In recent years she has worked as a consultant for government, non-governmental organisations, industry, Page 15: Pink anemonefish © Lucy Trippett education and research institutions on diverse projects requiring field surveys, monitoring programs, data analysis, Page 19: Hawksbill turtle © Jurgen Freund reporting, teaching, literature reviews and management recommendations. Her research and review projects have Page 21: Striped marlin © Doug Perrine SeaPics.com included studies on coral reef fish and invertebrates, Page 22: Shark and divers © Undersea Explorer seagrass beds and mangroves, and have required a good understanding of topics such as commercial shipping Page 25: Corals © Mark Spencer impacts, the effects of marine debris, the importance of apex predators, and the physical and biological attributes Page 27: Grey reef sharks © Jurgen Freund of large marine regions such as the Coral Sea. -
FAMILY Syngnathidae Bonaparte, 1831 - Pipefishes, Seahorses
FAMILY Syngnathidae Bonaparte, 1831 - pipefishes, seahorses SUBFAMILY Syngnathinae Bonaparte, 1831 - tail-brooding pipefishes, seahorses [=Signatidi, Aphyostomia, Lophobranchi, Syngnathidae, Scyphini, Siphostomini, Doryrhamphinae, Nerophinae, Doryrhamphinae, Solegnathinae, Gastrotokeinae, Gastrophori, Urophori, Doryichthyina, Sygnathoidinae (Syngnathoidinae), Phyllopteryginae, Acentronurinae, Leptoichthyinae, Haliichthyinae] Notes: Signatidi Rafinesque, 1810b:36 [ref. 3595] (ordine) Syngnathus [published not in latinized form before 1900; not available, Article 11.7.2] Aphyostomia Rafinesque, 1815:90 [ref. 3584] (family) ? Syngnathus [no stem of the type genus, not available, Article 11.7.1.1] Lophobranchi Jarocki, 1822:326, 328 [ref. 4984] (family) ? Syngnathus [no stem of the type genus, not available, Article 11.7.1.1] Syngnathidae Bonaparte, 1831:163, 185 [ref. 4978] (family) Syngnathus Scyphini Nardo, 1843:244 [ref. 31940] (subfamily) Scyphius [correct stem is Scyphi- Sheiko 2013:75 [ref. 32944]] Siphostomini Bonaparte, 1846:9, 89 [ref. 519] (subfamily) Siphostoma [correct stem is Siphostomat-; subfamily name sometimes seen as Siphonostominae based on Siphonostoma, but that name preoccupied in Copepoda] Doryrhamphinae Kaup, 1853:233 [ref. 2569] (subfamily) Doryrhamphus Kaup, 1856 [no valid type genus, not available, Article 11.7.1.1] Nerophinae Kaup, 1853:234 [ref. 2569] (subfamily) Nerophis Doryrhamphinae Kaup, 1856c:54 [ref. 2575] (subfamily) Doryrhamphus Solegnathinae Gill, 1859b:149 [ref. 1762] (subfamily) Solegnathus [Duncker 1912:231 [ref. 1156] used Solenognathina (subfamily) based on Solenognathus] Gastrotokeinae Gill, 1896c:158 [ref. 1743] (subfamily) Gasterotokeus [as Gastrotokeus, name must be corrected Article 32.5.3; ever corrected?] Gastrophori Duncker, 1912:220, 227 [ref. 1156] (group) [no stem of the type genus, not available, Article 11.7.1.1] Urophori Duncker, 1912:220, 231 [ref. 1156] (group) [no stem of the type genus, not available, Article 11.7.1.1] Doryichthyina Duncker, 1912:220, 229 [ref. -
Checklist of Fish and Invertebrates Listed in the CITES Appendices and in EC Regulation No
JNCC Report No. 379 Checklist of fish and invertebrates listed in the CITES appendices and in EC Regulation No. 338/97 7th Edition 2005 compiled by UNEP-WCMC © JNCC 2005 The JNCC is the forum through which the three country conservation agencies - the Countryside Council for Wales, English Nature and Scottish Natural Heritage - deliver their statutory responsibilities for Great Britain as a whole, and internationally. These responsibilities contribute to sustaining and enriching biological diversity, enhancing geological features and sustaining natural systems. As well as a source of advice and knowledge for the public, JNCC is the Government's wildlife adviser, providing guidance on the development of policies for, or affecting, nature conservation in Great Britain or internationally. Published by: Joint Nature Conservation Committee Copyright: 2005 Joint Nature Conservation Committee ISBN: 1st edition published 1988 ISBN 0-86139-466-6 2nd edition published 1993 ISBN 1-873701-47-0 3rd edition published 1995 ISSN 0963-8091 4th edition published 1999 ISSN 0963-8091 5th edition published 2001 ISSN 0963-8091 6th edition published 2003 ISSN 0963-8091 7th edition published 2005 ISSN 0963-8091 Citation: UNEP-WCMC (2005). Checklist of fish and invertebrates listed in the CITES appendices and in EC Regulation 338/97. 7th Edition. JNCC Report, No. 379. Further copies of this report are available from: CITES Unit Joint Nature Conservation Committee Monkstone House City Road Peterborough PE1 1JY United Kingdom Tel: +44 1733 562626 Fax: +44 1733 555948 This document can also be downloaded from: http://www.ukcites.gov.uk and www.jncc.gov.uk Prepared under contract from the Joint Nature Conservation Committee by UNEP- WCMC. -
Faa 118 / 119 Report Conservation of Tropical Forests
Note: please reinsert the USAID logo and the background FAA 118 / 119 REPORT CONSERVATION OF TROPICAL FORESTS AND BIOLOGICAL DIVERSITY IN THE PHILIPPINES 2008 You can reformat this Children in butanding costume (front cover)— photo by Ruel Pine (ruel.pine@gmailcom), WWF/Philippines FAA 118 / 119 REPORT CONSERVATION OF TROPICAL FORESTS AND BIOLOGICAL DIVERSITY IN THE PHILIPPINES DECEMBER 2008 This report was prepared by EcoGov and reviewed by USAID: USAID Ecogov Daniel Moore Ernesto S. Guiang Oliver Agoncillo Steve Dennison Aurelia Micko Maria Zita Butardo-Toribio Mary Joy Jochico Christy Owen Mary Melnyk Gem Castillo Hannah Fairbanks Trina Galido-Isorena Perry Aliño James L. Kho TABLE OF CONTENTS List of Tables ..................................................................................................................... ii List of Figures...................................................................................................................iii List of Annexes .................................................................................................................iii Acronyms........................................................................................................................... v 1.0 Executive Summary.............................................................................................. 1 2.0 Introduction........................................................................................................... 4 2.1 Purpose and Methodology of the Analyses.......................................................... -
En — 05.08.2001 — 006.001 — 1
1997R0338 — EN — 05.08.2001 — 006.001 — 1 This document is meant purely as a documentation tool and the institutions do not assume any liability for its contents ►B COUNCIL REGULATION (EC)No 338/97 of 9 December 1996 on the protection of species of wild fauna and flora by regulating trade therein (OJ L 61, 3.3.1997, p. 1) Amended by: Official Journal No page date ►M1 Commission Regulation (EC) No 938/97 of 26 May 1997 L 140 1 30.5.1997 ►M2 Commission Regulation (EC) No 2307/97 of 18 November 1997 L 325 1 27.11.1997 ►M3 Commission Regulation (EC) No 2214/98 of 15 October 1998 L 279 3 16.10.1998 ►M4 Commission Regulation (EC) No 1476/1999 of 6 July 1999 L 171 5 7.7.1999 ►M5 Commission Regulation (EC) No 2724/2000 of 30 November 2000 L 320 1 18.12.2000 ►M6 Commission Regulation (EC) No 1579/2001 of 1 August 2001 L 209 14 2.8.2001 Corrected by: ►C1 Corrigendum, OJ L 298, 1.11.1997, p. 70 (338/97) 1997R0338 — EN — 05.08.2001 — 006.001 — 2 ▼B COUNCIL REGULATION (EC)No 338/97 of 9 December 1996 on the protection of species of wild fauna and flora by regulating trade therein THE COUNCIL OF THE EUROPEAN UNION, Having regard to the Treaty establishing the European Community, and in particular Article 130s (1) thereof, Having regard to the proposal from the Commission (1), Having regard to the opinion of the Economic and Social Committee (2), Acting in accordance with the procedure laid down in Article 189c of the Treaty (3), (1) Whereas Regulation (EEC) No 3626/82 (4) applies the Convention on International Trade in Endangered Species of Wild Fauna -
The Use of Fish Species in a Marine Conservation Plan for Kwazulu-Natal
31/03/2011 The use of fish species in a marine conservation plan for KwaZulu-Natal. The use of fish species in a marine conservation plan for KwaZulu-Natal By Philip Haupt Submitted in partial fulfillment of the requirements for the degree of MSc in the Faculty of Science at the Nelson Mandela Metropolitan University. 31 March 2011 Supervisor: Dr A.T. Lombard Co-supervisors: Dr P.S. Goodman, Dr K. Sink Specialist advisors: Mr B. Q. Mann, Dr E. Lagabrielle, Dr J. Harris Philip Haupt, MSc thesis, Nelson Mandela Metropolitan University 31/03/2011 The use of fish species in a marine conservation plan for KwaZulu-Natal. Table of contents Summary..….…………….………….…………….…………….………….……………. Pages i-ii General Introduction The use of fish species in a marine conservation plan for KwaZulu-Natal. ….………….……1 Chapter One Selecting Fish Species for Marine Conservation planning…………….…………….…………16 Chapter Two Spatial and temporal resolution of marine fish data in KwaZulu-Natal…………….…………53 Chapter Three Modelling seasonal species life cycle envelopes for marine fish in KwaZulu-Natal…………93 Chapter Four Spatio-temporal marine conservation planning for fish species in KwaZulu-Natal…………128 General Conclusions……………………………………………………………….……………169 Overall acknowledgements……………………………………………………….……………176 Appendices (follows Overall acknowledgements) Appendix 1…………………………………………………………….………………….Pages 1-19 Appendix 2…………………………………………….…………………………….…….Pages 1-3 Appendix 3……………………………………………………...………………………….Pages 1-2 Appendix 4………………………………………………………………...……………….Pages 1-2 Appendix 5………………………………………………………………...……………….Pages -
COUNCIL REGULATION (EC) No 338/97 of 9 December 1996 on the Protection of Species of Wild Fauna and Flora by Regulating Trade Therein (OJ L 61, 3.3.1997, P
1997R0338 — EN — 19.10.1998 — 003.001 — 1 This document is meant purely as documentation tool and the institutions do not assume any liability for its contents "B COUNCIL REGULATION (EC) No 338/97 of 9 December 1996 on the protection of species of wild fauna and flora by regulating trade therein (OJ L 61, 3.3.1997, p. 1) Amended by: Official Journal No page date "M1 Commission Regulation (EC) No 938/97 of 26 May 1997 L 140 1 30.5.1997 "M2 Commission Regulation (EC) No 2307/97 of 18 November 1997 L 325 1 27.11.1997 "M3 Commission Regulation (EC) No 2214/98 of 15 October 1998 L 279 3 16.10.1998 Corrected by: "C1 Corrigendum, OJ L 298, 1.11.1997, p. 70 (338/97) 1997R0338 — EN — 19.10.1998 — 003.001 — 2 !B COUNCIL REGULATION (EC) No 338/97 of 9 December 1996 on the protection of species of wild fauna and flora by regulating trade therein THE COUNCIL OF THE EUROPEAN UNION, Having regard to the Treaty establishing the European Community, and in particular Article 130s (1) thereof, Having regard to the proposal from the Commission (1), Having regard to the opinion of the Economic and Social Committee (2), Acting in accordance with the procedure laid down in Article 189c of the Treaty (3), (1) Whereas Regulation (EEC) No 3626/82 (4) applies the Convention on International Trade in Endangered Species of Wild Fauna and Flora in the Community with effect from 1 January 1984; whereas the purpose of the Convention is to protect endangered species of fauna and flora through controls on international trade in specimens of those species; (2) Whereas,