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Article Evolutionary Dynamics of the OR Gene Repertoire in Teleost Fishes
bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Article Evolutionary dynamics of the OR gene repertoire in teleost fishes: evidence of an association with changes in olfactory epithelium shape Maxime Policarpo1, Katherine E Bemis2, James C Tyler3, Cushla J Metcalfe4, Patrick Laurenti5, Jean-Christophe Sandoz1, Sylvie Rétaux6 and Didier Casane*,1,7 1 Université Paris-Saclay, CNRS, IRD, UMR Évolution, Génomes, Comportement et Écologie, 91198, Gif-sur-Yvette, France. 2 NOAA National Systematics Laboratory, National Museum of Natural History, Smithsonian Institution, Washington, D.C. 20560, U.S.A. 3Department of Paleobiology, National Museum of Natural History, Smithsonian Institution, Washington, D.C., 20560, U.S.A. 4 Independent Researcher, PO Box 21, Nambour QLD 4560, Australia. 5 Université de Paris, Laboratoire Interdisciplinaire des Energies de Demain, Paris, France 6 Université Paris-Saclay, CNRS, Institut des Neurosciences Paris-Saclay, 91190, Gif-sur- Yvette, France. 7 Université de Paris, UFR Sciences du Vivant, F-75013 Paris, France. * Corresponding author: e-mail: [email protected]. !1 bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Abstract Teleost fishes perceive their environment through a range of sensory modalities, among which olfaction often plays an important role. -
Xenosaurus Tzacualtipantecus. the Zacualtipán Knob-Scaled Lizard Is Endemic to the Sierra Madre Oriental of Eastern Mexico
Xenosaurus tzacualtipantecus. The Zacualtipán knob-scaled lizard is endemic to the Sierra Madre Oriental of eastern Mexico. This medium-large lizard (female holotype measures 188 mm in total length) is known only from the vicinity of the type locality in eastern Hidalgo, at an elevation of 1,900 m in pine-oak forest, and a nearby locality at 2,000 m in northern Veracruz (Woolrich- Piña and Smith 2012). Xenosaurus tzacualtipantecus is thought to belong to the northern clade of the genus, which also contains X. newmanorum and X. platyceps (Bhullar 2011). As with its congeners, X. tzacualtipantecus is an inhabitant of crevices in limestone rocks. This species consumes beetles and lepidopteran larvae and gives birth to living young. The habitat of this lizard in the vicinity of the type locality is being deforested, and people in nearby towns have created an open garbage dump in this area. We determined its EVS as 17, in the middle of the high vulnerability category (see text for explanation), and its status by the IUCN and SEMAR- NAT presently are undetermined. This newly described endemic species is one of nine known species in the monogeneric family Xenosauridae, which is endemic to northern Mesoamerica (Mexico from Tamaulipas to Chiapas and into the montane portions of Alta Verapaz, Guatemala). All but one of these nine species is endemic to Mexico. Photo by Christian Berriozabal-Islas. amphibian-reptile-conservation.org 01 June 2013 | Volume 7 | Number 1 | e61 Copyright: © 2013 Wilson et al. This is an open-access article distributed under the terms of the Creative Com- mons Attribution–NonCommercial–NoDerivs 3.0 Unported License, which permits unrestricted use for non-com- Amphibian & Reptile Conservation 7(1): 1–47. -
Ducks, Geese, and Swans of the World: Sources Cited
University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln Ducks, Geese, and Swans of the World by Paul A. Johnsgard Papers in the Biological Sciences 2010 Ducks, Geese, and Swans of the World: Sources Cited Paul A. Johnsgard University of Nebraska-Lincoln, [email protected] Follow this and additional works at: https://digitalcommons.unl.edu/biosciducksgeeseswans Part of the Ornithology Commons Johnsgard, Paul A., "Ducks, Geese, and Swans of the World: Sources Cited" (2010). Ducks, Geese, and Swans of the World by Paul A. Johnsgard. 17. https://digitalcommons.unl.edu/biosciducksgeeseswans/17 This Article is brought to you for free and open access by the Papers in the Biological Sciences at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in Ducks, Geese, and Swans of the World by Paul A. Johnsgard by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. Sources Cited Alder, L. P. 1963. The calls and displays of African and In Bellrose, F. C. 1976. Ducks, geese and swans of North dian pygmy geese. In Wildfowl Trust, 14th Annual America. 2d ed. Harrisburg, Pa.: Stackpole. Report, pp. 174-75. Bellrose, F. c., & Hawkins, A. S. 1947. Duck weights in Il Ali, S. 1960. The pink-headed duck Rhodonessa caryo linois. Auk 64:422-30. phyllacea (Latham). Wildfowl Trust, 11th Annual Re Bengtson, S. A. 1966a. [Observation on the sexual be port, pp. 55-60. havior of the common scoter, Melanitta nigra, on the Ali, S., & Ripley, D. 1968. Handbook of the birds of India breeding grounds, with special reference to courting and Pakistan, together with those of Nepal, Sikkim, parties.] Var Fagelvarld 25:202-26. -
Creating Jobs, Protecting Forests?
Creating Jobs, Protecting Forests? An Analysis of the State of the Nation’s Regional Forest Agreements Creating Jobs, Protecting Forests? An Analysis of the State of the Nation’s Regional Forest Agreements The Wilderness Society. 2020, Creating Jobs, Protecting Forests? The State of the Nation’s RFAs, The Wilderness Society, Melbourne, Australia Table of contents 4 Executive summary Printed on 100% recycled post-consumer waste paper 5 Key findings 6 Recommendations Copyright The Wilderness Society Ltd 7 List of abbreviations All material presented in this publication is protected by copyright. 8 Introduction First published September 2020. 9 1. Background and legal status 12 2. Success of the RFAs in achieving key outcomes Contact: [email protected] | 1800 030 641 | www.wilderness.org.au 12 2.1 Comprehensive, Adequate, Representative Reserve system 13 2.1.1 Design of the CAR Reserve System Cover image: Yarra Ranges, Victoria | mitchgreenphotos.com 14 2.1.2 Implementation of the CAR Reserve System 15 2.1.3 Management of the CAR Reserve System 16 2.2 Ecologically Sustainable Forest Management 16 2.2.1 Maintaining biodiversity 20 2.2.2 Contributing factors to biodiversity decline 21 2.3 Security for industry 22 2.3.1 Volume of logs harvested 25 2.3.2 Employment 25 2.3.3 Growth in the plantation sector of Australia’s wood products industry 27 2.3.4 Factors contributing to industry decline 28 2.4 Regard to relevant research and projects 28 2.5 Reviews 32 3. Ability of the RFAs to meet intended outcomes into the future 32 3.1 Climate change 32 3.1.1 The role of forests in climate change mitigation 32 3.1.2 Climate change impacts on conservation and native forestry 33 3.2 Biodiversity loss/resource decline 33 3.2.1 Altered fire regimes 34 3.2.2 Disease 35 3.2.3 Pest species 35 3.3 Competing forest uses and values 35 3.3.1 Water 35 3.3.2 Carbon credits 36 3.4 Changing industries, markets and societies 36 3.5 International and national agreements 37 3.6 Legal concerns 37 3.7 Findings 38 4. -
Xenosaurus Tzacualtipantecus. the Zacualtipán Knob-Scaled Lizard Is Endemic to the Sierra Madre Oriental of Eastern Mexico
Xenosaurus tzacualtipantecus. The Zacualtipán knob-scaled lizard is endemic to the Sierra Madre Oriental of eastern Mexico. This medium-large lizard (female holotype measures 188 mm in total length) is known only from the vicinity of the type locality in eastern Hidalgo, at an elevation of 1,900 m in pine-oak forest, and a nearby locality at 2,000 m in northern Veracruz (Woolrich- Piña and Smith 2012). Xenosaurus tzacualtipantecus is thought to belong to the northern clade of the genus, which also contains X. newmanorum and X. platyceps (Bhullar 2011). As with its congeners, X. tzacualtipantecus is an inhabitant of crevices in limestone rocks. This species consumes beetles and lepidopteran larvae and gives birth to living young. The habitat of this lizard in the vicinity of the type locality is being deforested, and people in nearby towns have created an open garbage dump in this area. We determined its EVS as 17, in the middle of the high vulnerability category (see text for explanation), and its status by the IUCN and SEMAR- NAT presently are undetermined. This newly described endemic species is one of nine known species in the monogeneric family Xenosauridae, which is endemic to northern Mesoamerica (Mexico from Tamaulipas to Chiapas and into the montane portions of Alta Verapaz, Guatemala). All but one of these nine species is endemic to Mexico. Photo by Christian Berriozabal-Islas. Amphib. Reptile Conserv. | http://redlist-ARC.org 01 June 2013 | Volume 7 | Number 1 | e61 Copyright: © 2013 Wilson et al. This is an open-access article distributed under the terms of the Creative Com- mons Attribution–NonCommercial–NoDerivs 3.0 Unported License, which permits unrestricted use for non-com- Amphibian & Reptile Conservation 7(1): 1–47. -
Supplement - 2016
Green and black poison dart frog Supplement - 2016 Whitley Wildlife Conservation Trust Paignton Zoo Environmental Park, Living Coasts & Newquay Zoo Supplement - 2016 Index Summary Accounts 4 Figures At a Glance 6 Paignton Zoo Inventory 7 Living Coasts Inventory 21 Newquay Zoo Inventory 25 Scientific Research Projects, Publications and Presentations 35 Awards and Achievements 43 Our Zoo in Numbers 45 Whitley Wildlife Conservation Trust Paignton Zoo Environmental Park, Living Coasts & Newquay Zoo Bornean orang utan Paignton Zoo Inventory Pileated gibbon Paignton Zoo Inventory 1st January 2016 - 31st December 2016 Identification IUCN Status Arrivals Births Did not Other Departures Status Identification IUCN Status Arrivals Births Did not Other Departures Status Status 1/1/16 survive deaths 31/12/16 Status 1/1/16 survive deaths 31/12/16 >30 days >30 days after birth after birth MFU MFU MAMMALIA Callimiconidae Goeldi’s monkey Callimico goeldii VU 5 2 1 2 MONOTREMATA Tachyglossidae Callitrichidae Short-beaked echidna Tachyglossus aculeatus LC 1 1 Pygmy marmoset Callithrix pygmaea LC 5 4 1 DIPROTODONTIA Golden lion tamarin Leontopithecus rosalia EN 3 1 1 1 1 Macropodidae Pied tamarin Saguinus bicolor CR 7 3 3 3 4 Western grey Macropus fuliginosus LC 9 2 1 3 3 Cotton-topped Saguinus oedipus CR 3 3 kangaroo ocydromus tamarin AFROSORICIDA Emperor tamarin Saguinus imperator LC 3 2 1 subgrisescens Tenrecidae Cebidae Lesser hedgehog Echinops telfairi LC 8 4 4 tenrec Squirrel monkey Saimiri sciureus LC 5 5 Giant (tail-less) Tenrec ecaudatus LC 2 2 1 1 White-faced saki Pithecia pithecia LC 4 1 1 2 tenrec monkey CHIROPTERA Black howler monkey Alouatta caraya NT 2 2 1 1 2 Pteropodidae Brown spider monkey Ateles hybridus CR 4 1 3 Rodrigues fruit bat Pteropus rodricensis CR 10 3 7 Brown spider monkey Ateles spp. -
Birdquest Australia (Western and Christmas
Chestnut-backed Button-quail in the north was a bonus, showing brilliantly for a long time – unheard of for this family (Andy Jensen) WESTERN AUSTRALIA 5/10 – 27 SEPTEMBER 2017 LEADER: ANDY JENSEN ASSISTANT: STUART PICKERING ! ! 1 BirdQuest Tour Report: Western Australia (including Christmas Island) 2017 www.birdquest-tours.com Western Shrike-tit was one of the many highlights in the southwest (Andy Jensen) Western Australia, if it were a country, would be the 10th largest in the world! The BirdQuest Western Australia (including Christmas Island) 2017 tour offered an unrivalled opportunity to cover a large portion of this area, as well as the offshore territory of Christmas Island (located closer to Indonesia than mainland Australia). Western Australia is a highly diverse region with a range of habitats. It has been shaped by the isolation caused by the surrounding deserts. This isolation has resulted in a richly diverse fauna, with a high degree of endemism. A must visit for any birder. This tour covered a wide range of the habitats Western Australia has to offer as is possible in three weeks, including the temperate Karri and Wandoo woodlands and mallee of the southwest, the coastal heathlands of the southcoast, dry scrub and extensive uncleared woodlands of the goldfields, coastal plains and mangroves around Broome, and the red-earth savannah habitats and tropical woodland of the Kimberley. The climate varied dramatically Conditions ranged from minus 1c in the Sterling Ranges where we were scraping ice off the windscreen, to nearly 40c in the Kimberley, where it was dust needing to be removed from the windscreen! We were fortunate with the weather – aside from a few minutes of drizzle as we staked out one of the skulkers in the Sterling Ranges, it remained dry the whole time. -
Atropoides Picadoi Agkistrodon Bilineatus
37 Beauty of the Beast SNAKES OF COSTA RICA AA DEADLYDEADLY CHARMCHARM Large and small, colorful or drab, harmless or dangerously venomous - meet some of the most fascinating ophidians of Mesoamerica 38 Spilotes pullatus Powerful, muscular, agile and fast-moving, this diurnal and highly variable species can attain a length of 2.6 meter / 8.5 feet. Relatively common in dry lowland riverine forest from Mexico to Argentina, it makes for an impressive encounter in the field, offering a most effective defensive display which includes mouth gaping, loud hissing and extreme inflating of the throat. 39 TEXTS BY POMPILIO CAMPOS BONILLA & ANDREA FERRARI PHOTOS BY ANDREA & ANTONELLA FERRARI and POMPILIO CAMPOS CHINCHILLA osta Rica is a Central American in major international treaties and Ctropical country which thanks to its conventions for the conservation of prevailing environmental conditions nature. A member of CITES, it follow can boast a rich diversity of snakes, strict rules regulating the international with a total of 11 families, 64 genera trade in endangered species - therefore and 139 ophidian species of aquatic, snakes enjoy benefits conferred by terrestrial and arboreal habits, law, ensuring their survival. However, distributed in almost all its territory, because of the myths and popular from sea level to an elevation of about beliefs about snakes, many species of 3000 meters. Only 22 of these possess great ecological importance are still a venom capable of causing harm to victims of human ignorance and are human health - these belong to the regularly killed, mainly in agricultural family Viperidae (pit vipers with heat- areas where workers are afraid of sensitive loreal pits, with haemotoxic being bitten. -
Federal Register/Vol. 85, No. 74/Thursday, April 16, 2020/Notices
21262 Federal Register / Vol. 85, No. 74 / Thursday, April 16, 2020 / Notices acquisition were not included in the 5275 Leesburg Pike, Falls Church, VA Comment (1): We received one calculation for TDC, the TDC limit would not 22041–3803; (703) 358–2376. comment from the Western Energy have exceeded amongst other items. SUPPLEMENTARY INFORMATION: Alliance, which requested that we Contact: Robert E. Mulderig, Deputy include European starling (Sturnus Assistant Secretary, Office of Public Housing What is the purpose of this notice? vulgaris) and house sparrow (Passer Investments, Office of Public and Indian Housing, Department of Housing and Urban The purpose of this notice is to domesticus) on the list of bird species Development, 451 Seventh Street SW, Room provide the public an updated list of not protected by the MBTA. 4130, Washington, DC 20410, telephone (202) ‘‘all nonnative, human-introduced bird Response: The draft list of nonnative, 402–4780. species to which the Migratory Bird human-introduced species was [FR Doc. 2020–08052 Filed 4–15–20; 8:45 am]‘ Treaty Act (16 U.S.C. 703 et seq.) does restricted to species belonging to biological families of migratory birds BILLING CODE 4210–67–P not apply,’’ as described in the MBTRA of 2004 (Division E, Title I, Sec. 143 of covered under any of the migratory bird the Consolidated Appropriations Act, treaties with Great Britain (for Canada), Mexico, Russia, or Japan. We excluded DEPARTMENT OF THE INTERIOR 2005; Pub. L. 108–447). The MBTRA states that ‘‘[a]s necessary, the Secretary species not occurring in biological Fish and Wildlife Service may update and publish the list of families included in the treaties from species exempted from protection of the the draft list. -
South-East Marine Region Profile
South-east marine region profile A description of the ecosystems, conservation values and uses of the South-east Marine Region June 2015 © Commonwealth of Australia 2015 South-east marine region profile: A description of the ecosystems, conservation values and uses of the South-east Marine Region is licensed by the Commonwealth of Australia for use under a Creative Commons Attribution 3.0 Australia licence with the exception of the Coat of Arms of the Commonwealth of Australia, the logo of the agency responsible for publishing the report, content supplied by third parties, and any images depicting people. For licence conditions see: http://creativecommons.org/licenses/by/3.0/au/ This report should be attributed as ‘South-east marine region profile: A description of the ecosystems, conservation values and uses of the South-east Marine Region, Commonwealth of Australia 2015’. The Commonwealth of Australia has made all reasonable efforts to identify content supplied by third parties using the following format ‘© Copyright, [name of third party] ’. Front cover: Seamount (CSIRO) Back cover: Royal penguin colony at Finch Creek, Macquarie Island (Melinda Brouwer) B / South-east marine region profile South-east marine region profile A description of the ecosystems, conservation values and uses of the South-east Marine Region Contents Figures iv Tables iv Executive Summary 1 The marine environment of the South-east Marine Region 1 Provincial bioregions of the South-east Marine Region 2 Conservation values of the South-east Marine Region 2 Key ecological features 2 Protected species 2 Protected places 2 Human activities and the marine environment 3 1. -
Trade in Seahorses and Other Syngnathids in Countries Outside Asia (1998-2001)
ISSN 1198-6727 Fisheries Centre Research Reports 2011 Volume 19 Number 1 Trade in seahorses and other syngnathids in countries outside Asia (1998-2001) Fisheries Centre, University of British Columbia, Canada Trade in seahorses and other syngnathids in countries outside Asia (1998-2001) 1 Edited by Amanda C.J. Vincent, Brian G. Giles, Christina A. Czembor and Sarah J. Foster Fisheries Centre Research Reports 19(1) 181 pages © published 2011 by The Fisheries Centre, University of British Columbia 2202 Main Mall Vancouver, B.C., Canada, V6T 1Z4 ISSN 1198-6727 1 Cite as: Vincent, A.C.J., Giles, B.G., Czembor, C.A., and Foster, S.J. (eds). 2011. Trade in seahorses and other syngnathids in countries outside Asia (1998-2001). Fisheries Centre Research Reports 19(1). Fisheries Centre, University of British Columbia [ISSN 1198-6727]. Fisheries Centre Research Reports 19(1) 2011 Trade in seahorses and other syngnathids in countries outside Asia (1998-2001) edited by Amanda C.J. Vincent, Brian G. Giles, Christina A. Czembor and Sarah J. Foster CONTENTS DIRECTOR ’S FOREWORD ......................................................................................................................................... 1 EXECUTIVE SUMMARY ............................................................................................................................................. 2 Introduction ..................................................................................................................................................... 2 Methods ........................................................................................................................................................... -
The Function and Evolution of Egg Colour in Birds
University of Windsor Scholarship at UWindsor Electronic Theses and Dissertations Theses, Dissertations, and Major Papers 2012 The function and evolution of egg colour in birds Daniel Hanley University of Windsor Follow this and additional works at: https://scholar.uwindsor.ca/etd Recommended Citation Hanley, Daniel, "The function and evolution of egg colour in birds" (2012). Electronic Theses and Dissertations. 382. https://scholar.uwindsor.ca/etd/382 This online database contains the full-text of PhD dissertations and Masters’ theses of University of Windsor students from 1954 forward. These documents are made available for personal study and research purposes only, in accordance with the Canadian Copyright Act and the Creative Commons license—CC BY-NC-ND (Attribution, Non-Commercial, No Derivative Works). Under this license, works must always be attributed to the copyright holder (original author), cannot be used for any commercial purposes, and may not be altered. Any other use would require the permission of the copyright holder. Students may inquire about withdrawing their dissertation and/or thesis from this database. For additional inquiries, please contact the repository administrator via email ([email protected]) or by telephone at 519-253-3000ext. 3208. THE FUNCTION AND EVOLUTION OF EGG COLOURATION IN BIRDS by Daniel Hanley A Dissertation Submitted to the Faculty of Graduate Studies through Biological Sciences in Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy at the University of Windsor Windsor, Ontario, Canada 2011 © Daniel Hanley THE FUNCTION AND EVOLUTION OF EGG COLOURATION IN BIRDS by Daniel Hanley APPROVED BY: __________________________________________________ Dr. D. Lahti, External Examiner Queens College __________________________________________________ Dr.