Downloaded from genome.cshlp.org on September 25, 2021 - Published by Cold Spring Harbor Laboratory Press Domain shuffling and the evolution of vertebrates Takeshi Kawashima1, 2, 3, Shuichi Kawashima4, Chisaki Tanaka5, Miho Murai6, Masahiko Yoneda6, Nicholas H. Putnam2, Daniel S. Rokhsar2, Minoru Kanehisa4,7, Nori Satoh1, 8, Hiroshi Wada5 1: Okinawa Institute of Science and Technology, Uruma, Okinawa, 904-2234, Japan 2: Department of Energy Joint Genome Institute, Walnut Creek, CA 94598, USA 3: Japanese Society for Promotion of sciences, 6 Ichibancho, Chiyoda-ku, Tokyo, 102-8471, Japan 4: Human Genome Center, Institute of Medical Science, University of Tokyo, 4-6-1 Shirokane-dai Minato-ku Tokyo 108-8639, Japan 5: Graduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572 JAPAN 6: Aichi Prefectural College of Nursing and Health, Miriyama-ku Nagoya 463-8502 JAPAN 7: Bioinformatics Center, Institute of Chemical Research, Kyoto University, Kyoto 611-0011, Japan 8: Department of Zoology, Graduate School of Sciences, Kyoto University, Kyoto 606-8502, JAPAN Address for correspondense: Hiroshi Wada Graduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572 JAPAN E-mail:
[email protected], Tel & Fax: +81-29-853-4671 Takeshi Kawashima Okinawa Institute of Science and Technology, Uruma, Okinawa, 904-2234, Japan E-mail:
[email protected], Tel; +1-98-921-2245, Fax; +1-98-934-5622 Running title: Domain shuffling in vertebrate genomes Key words: domain shuffling, exon shuffling, vertebrate, cartilage, chordate, notochord, ascidian, amphioxus 1 Downloaded from genome.cshlp.org on September 25, 2021 - Published by Cold Spring Harbor Laboratory Press Abstract The evolution of vertebrates included a number of important events: the development of cartilage, the immune system, and complicated craniofacial structures.