VIRGINIA ARAXIE ZAKIAN Curriculum Vitae PRESENT POSITION and ADDRESS Harry C
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2012-2013 Seminars
2012-13 Archived Seminars 8/14/14 12:42 PM A Cornell University • Deparhnent of Iv1olecular Biology and Genetics 2012-13 Archived Seminars May 24, 2013 Speaker: Julius Lucks Department of Chemical and Biomedical Engineering Cornell University Title: "Towards Unraveling the RNA Sequence-Structure Code Using High Throughput RNA Structrure Characterizaion" Host: Sylvia Lee http://www.cheme.cornell.edu/people/profile.cfm?netid=jl564 May 17, 2013 W. Lee Kraus Distinguished Chair & Director, Cecil H. and Ida Green Ctr. for Reproductive Biology Sciences Professor & Vice Chair for Basic Science, Dept of Ob/Gyn Professor, Department of Pharmacology University of Texas Southwestern Medical Ctr. @ Dallas Title: "Chromatin-Mediated Gene Regulation by PARP-1: Control of Cellular Signaling and Differentiation Programs" Host: John Lis http://www.utsouthwestern.edu/education/medical-school/departments/green-center/index.html May 9, 2013 (THURSDAY) Brenton Graveley University of Connecticut Health Center Genetics and Developmental Biology Title: "Insights into RNA Biology in Drosophila from Genome-Wide Studies" Host: Jeff Pleiss http://genetics.uchc.edu/faculty/assoc_professors/graveley.html May 3, 2013 Bill Kelly Emory University Department of Biology Title: "Remembrance of Transcriptiones Past: Germline-Specific Modes of Transcription Regulation in C. elegans" Host: Kelly Liu http://www.biology.emory.edu/research/Kelly/members/Bill.html April 26, 2013 Kevin Struhl Harvard Medical School Dept. of Biological Chemistry & Molecular Pharmacology Title: "Transcriptional -
321444 1 En Bookbackmatter 533..564
Index 1 Abdominal aortic aneurysm, 123 10,000 Year Clock, 126 Abraham, 55, 92, 122 127.0.0.1, 100 Abrahamic religion, 53, 71, 73 Abundance, 483 2 Academy award, 80, 94 2001: A Space Odyssey, 154, 493 Academy of Philadelphia, 30 2004 Vital Progress Summit, 482 Accelerated Math, 385 2008 U.S. Presidential Election, 257 Access point, 306 2011 Egyptian revolution, 35 ACE. See artificial conversational entity 2011 State of the Union Address, 4 Acquired immune deficiency syndrome, 135, 2012 Black Hat security conference, 27 156 2012 U.S. Presidential Election, 257 Acxiom, 244 2014 Lok Sabha election, 256 Adam, 57, 121, 122 2016 Google I/O, 13, 155 Adams, Douglas, 95, 169 2016 State of the Union, 28 Adam Smith Institute, 493 2045 Initiative, 167 ADD. See Attention-Deficit Disorder 24 (TV Series), 66 Ad extension, 230 2M Companies, 118 Ad group, 219 Adiabatic quantum optimization, 170 3 Adichie, Chimamanda Ngozi, 21 3D bioprinting, 152 Adobe, 30 3M Cloud Library, 327 Adonis, 84 Adultery, 85, 89 4 Advanced Research Projects Agency Network, 401K, 57 38 42, 169 Advice to a Young Tradesman, 128 42-line Bible, 169 Adwaita, 131 AdWords campaign, 214 6 Affordable Care Act, 140 68th Street School, 358 Afghan Peace Volunteers, 22 Africa, 20 9 AGI. See Artificial General Intelligence 9/11 terrorist attacks, 69 Aging, 153 Aging disease, 118 A Aging process, 131 Aalborg University, 89 Agora (film), 65 Aaron Diamond AIDS Research Center, 135 Agriculture, 402 AbbVie, 118 Ahmad, Wasil, 66 ABC 20/20, 79 AI. See artificial intelligence © Springer Science+Business Media New York 2016 533 N. -
Suppression of Spontaneous Genome Rearrangements in Yeast DNA Helicase Mutants
Suppression of spontaneous genome rearrangements in yeast DNA helicase mutants Kristina H. Schmidt*†‡ and Richard D. Kolodner*§¶ *Ludwig Institute for Cancer Research and §Departments of Medicine and Cellular and Molecular Medicine and Cancer Center, University of California at San Diego, La Jolla, CA 92093; and †Division of Cell Biology, Microbiology, and Molecular Biology, Department of Biology, University of South Florida, Tampa, FL 33620 Contributed by Richard D. Kolodner, October 2, 2006 (sent for review June 16, 2006) Saccharomyces cerevisiae mutants lacking two of the three DNA the hyperrecombination and DNA-damage sensitive phenotypes of helicases Sgs1, Srs2, and Rrm3 exhibit slow growth that is sup- srs2 mutants are suppressed by HR defects (31). The physical pressed by disrupting homologous recombination. Cells lacking interaction between Srs2 and Pol32, a structural subunit of DNA Sgs1 and Rrm3 accumulate gross-chromosomal rearrangements polymerase delta, suggests that Srs2 may act during DNA replica- (GCRs) that are suppressed by the DNA damage checkpoint and by tion (32). Srs2 also is required for proper activation of Rad53 in homologous recombination-defective mutations. In contrast, rrm3, response to DNA-damaging agents (7, 33), and Srs2 itself is srs2, and srs2 rrm3 mutants have wild-type GCR rates. GCR types in phosphorylated after cells are exposed to methyl-methanesulfon- helicase double mutants include telomere additions, transloca- ate, hydroxyurea, or UV light; however, the significance of this tions, and broken DNAs healed by a complex process of hairpin- phosphorylation is unknown (33). mediated inversion. Spontaneous activation of the Rad53 check- Unlike Sgs1 and Srs2, the Rrm3 helicase has 5Ј-to-3Ј polarity and point kinase in the rrm3 mutant depends on the Mec3͞Rad24 DNA shares homology throughout its helicase domain with the S. -
04 Proceedings Draft Final
UNIVERSITY OF WASHINGTON’S Fifth Annual Undergraduate Research Symposium A Celebration of Undergraduates in Research Fostering a Community of Student Scholars in the Arts, Sciences, Social Sciences, Technology, and Humanities UNI UNIVERSITY OF WASHINGTON’S Seventh Annual Undergraduate Research Symposium A Celebration of Undergraduates in Research 14 May 2004 MARY GATES HALL 12:00 – 5:00 PM PROCEEDINGS Sponsors: The UW Office of the President, Office of the Provost, Office of Research , Office of Undergraduate Education and the Undergraduate Research Program The Seventh Annual Undergraduate Research Symposium is organized by the Undergraduate Research Program (URP), which facilitates research experiences for undergraduates in all academic disciplines. URP staff assist students in planning for an undergraduate research experience, identifying faculty mentors, projects, and departmental resources, defining research goals, presenting and publishing research findings, obtaining academic credit, and seeking funding for their research. Students interested in becoming involved in research may contact the URP office in Mary Gates Hall Room 310 for an appointment or send email to [email protected]. URP maintains a listing of currently available research projects and other resources for students and faculty at: www.washington.edu/research/urp. Janice DeCosmo, Director Nichole Fazio, Assistant Director Terry Schenold, Graduate Student Assistant Amanda Burrows, Student Assistant Lisabeth Cron, Student Assistant The Undergraduate Research Program is a program of the UW’s Office of Undergraduate Education. UNIVERSITY OF WASHINGTON’S SEVENTH ANNUAL UNDERGRADUATE RESEARCH SYMPOSIUM PROCEEDINGS _______________________________________________________ TABLE OF CONTENTS POSTER SESSIONS 4 PRESENTATION SESSIONS 75 1A. CHALLENGING FAMILIAR CONTEXTS IN LEARNING 76 1B. CELLULAR MECHANISMS OF DVELOPMENT AND DISEASE 77 1C. -
2008 MD/Phd Program
Robert Wood Johnson Medical School MD/PhD Program Symposium Thursday, July 31, 2008 Department of Molecular Biology Carl Icahn Laboratory Princeton University Princeton, New Jersey Program Continental Breakfast 8:30 to 9:00 a.m. Introductory Remarks 9:00 to 9:30 a.m. Terri Goss Kinzy, PhD Assistant Dean for Medical Scientist Training Director, UMDNJ-RWJMS/Rutgers/Princeton MD/PhD Program Professor, Department of Molecular Genetics, Microbiology, and Immunology, UMDNJ-RWJMS James Broach, PhD Associate Director, Lewis-Sigler Institute for Integrative Genomics, Princeton University Professor and Associate Chair, Department of Molecular Biology, Princeton University Student Presentations (Session 1) 9:30 to 10:30 a.m. Break 10:30 to 10:45 a.m. Student Presentations (Session 2) 10:45 to 11:45 a.m. Break 11:45 to 12:00 p.m. Dean’s Welcome Remarks 12:00 to 12:15 p.m. Peter Amenta, MD, PhD Interim Dean, UMDNJ-RWJMS Professor and Chair, Department of Pathology and Laboratory Medicine, UMDNJ-RWJMS Luncheon 12:15 to 2:00 p.m. Student Presentations (Session 3) 2:00 to 3:00 p.m. Break 3:00 to 3:15 p.m. Keynote Address 3:15 to 4:15 p.m. Leon Rosenberg, MD Professor, Department of Molecular Biology, Princeton University and Woodrow Wilson School of Public and International Affairs “Questions a Physician-Scientist Asks About Life” Concluding Remarks 4:15 to 4:30 p.m. Elizabeth Gavis, MD, PhD Princeton Liason, UMDNJ-RWJMS/Rutgers/Princeton MD/PhD Program Professor, Department of Molecular Biology, Princeton University Reception 4:30 p.m. Acknowledgments: The MD/PhD Symposium was made possible by the support of Dr. -
Mechanisms of Recombination: 50 Th Anniversary Meeting of the Holliday Model
Mechanisms of Recombination: 50 th Anniversary Meeting of the Holliday Model May 19-23, 2014 Alicante, Spain Monday, May 19 Afternoon Arrival 17:00 Registration 18:30 Welcome drinks 19:30 Keynote lectures: Scott Keeney (Memorial Sloan Kettering Cancer Center, US) Mechanism and regulation of meiotic recombination initiation David Sherratt (University of Oxford, UK) Recombination in live bacteria Dinner Tuesday, May 20 Breakfast Session 1 Chairperson : Lorraine Symington 09:00 – 09:25 Roland Kanaar (Erasmus MC, The Netherlands) Molecular mechanism of homologous recombination 09:25 – 09:50 Patrick Sung (Yale University, US) Regulation of homologous recombination by DNA helicases 09:50 – 10:15 Steve Kowalczykowski (University of California, Davis, US) Seeing recombination: one molecule and step at a time 10:15 – 10:30 Xiaodong Zhang (Imperial College London, UK) Structural characterisations of BRCA2 provide mechanistic insights into Rad51 binding and filament formation during homologous recombination Break 11:00 – 11:25 Akira Shinohara (Osaka University, Japan) Assembly and disassembly of Rad51 complex by Rad51 mediators and DNA helicases 11:25 – 11:50 Hiroshi Iwasaki (Tokyo Institute of Technology, Japan) The activation of Rad51-dirven DNA strand exchange reaction by the Swi5-Sfr1 complex 11:50 – 12:15 Wolf-Dietrich Heyer (University of California, Davis, US) Mechanism and regulation of recombinational DNA repair 12:15 – 12:40 Doug Bishop (University of Chicago, US) Recombinosome architecture and homolog bias in meiotic recombination 12:40 -
Virginia Zakian CV
VIRGINIA ARAXIE ZAKIAN Curriculum Vitae PRESENT POSITION AND ADDRESS Harry C. Wiess Professor in the Life Sciences Department of Molecular Biology Princeton University Princeton NJ 08544-1014 Phone: (609) 258-6770 ; FAX: (609) 258-1701 ; email: [email protected] CITIZENSHIP: U.S.A. RESEARCH INTERESTS Telomeres, DNA helicases, Replication fork progression, Chromosome stability, Genome integrity EDUCATION, RESEARCH EXPERIENCE, AND PROFESSIONAL POSITIONS A.B. 1970, Cornell University, College of Arts and Sciences, Ithaca, NY (Phi Beta Kappa, 1969; cum laude in Biology; distinction in all subjects; research Xenopus development, with Dr. A.W. Blackler). Ph.D. 1975, Yale University, Dept. of Biology (with Dr. Joseph G. Gall, DNA replication in Drosophila; NDF pre-doctoral fellowship). Postdoctoral Fellow 1975-76, Princeton University, Dept. of Biochemistry (with Dr. Arnold J. Levine, Replication of Adeno and SV40 viruses; NIH post doctoral fellowship) Postdoctoral Fellow 1976-78, University of Washington, Dept. of Genetics (with Dr. Walton L. Fangman, DNA replication in yeast; NIH post doctoral fellowship) Assistant Member 1979-83, Fred Hutchinson Cancer Research Center, Basic Sciences Associate Member 1984-1987, Fred Hutchinson Cancer Research Center, Basic Sciences Member 1987-1995, Fred Hutchinson Cancer Research Center, Basic Sciences (tenured position) Affiliate Faculty 1979-1995, U. of Washington (Depts. of Genetics and Pathology) Professor, Department of Molecular Biology, Princeton University, July 1995- to date Harry C. Wiess Professor -
The Yeast Pif1 Helicase Prevents Genomic Instability Caused by G-Quadruplex-Forming CEB1 Sequences in Vivo
The Yeast Pif1 Helicase Prevents Genomic Instability Caused by G-Quadruplex-Forming CEB1 Sequences In Vivo Cyril Ribeyre, Judith Lopes, Jean-Baptiste Boulé, Aurele Piazza, Aurore Guédin, Virginia Zakian, Jean-Louis Mergny, Alain Nicolas To cite this version: Cyril Ribeyre, Judith Lopes, Jean-Baptiste Boulé, Aurele Piazza, Aurore Guédin, et al.. The Yeast Pif1 Helicase Prevents Genomic Instability Caused by G-Quadruplex-Forming CEB1 Sequences In Vivo. PLoS Genetics, Public Library of Science, 2009, 5 (5), pp.e1000475. 10.1371/jour- nal.pgen.1000475. hal-02109281 HAL Id: hal-02109281 https://hal.archives-ouvertes.fr/hal-02109281 Submitted on 24 Apr 2019 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. The Yeast Pif1 Helicase Prevents Genomic Instability Caused by G-Quadruplex-Forming CEB1 Sequences In Vivo Cyril Ribeyre1.¤, Judith Lopes1., Jean-Baptiste Boule´ 1,2, Aure` le Piazza1, Aurore Gue´din3, Virginia A. Zakian2, Jean-Louis Mergny3, Alain Nicolas1* 1 Recombinaison et Instabilite´ Ge´ne´tique, Institut Curie Centre de Recherche, CNRS UMR3244, Universite´ Pierre et Marie Curie, Paris, France, 2 Department of Molecular Biology, Princeton University, Princeton, New Jersey, United States of America, 3 Laboratoire de Biophysique, Museum National d’Histoire Naturelle USM 503, INSERM U565, CNRS UMR5153, Paris, France Abstract In budding yeast, the Pif1 DNA helicase is involved in the maintenance of both nuclear and mitochondrial genomes, but its role in these processes is still poorly understood. -
Yeast Chromosome Biology & Cell Cycle
Yeast Chromosome Biology & Cell Cycle July 15-July 20, 2018 Steamboat Grand, Steamboat Springs, Colorado Organizers: Jennifer Gerton, Investigator Stowers Institute for Medical Research Kansas City, Missouri M. K. Raghuraman (Raghu), Research Professor University of Washington Seattle, Washington Sunday, July 15, 2018 Time Title 4:00 p.m. – 9:00 p.m. Conference Registration 6:00 p.m. – 7:00 p.m. Welcome Reception, open bar 7:00 p.m. – 8:30 p.m. DINNER 8:45 p.m. – 10:00 p.m. Keynote Address David Morgan, University of California San Francisco Mechanisms underlying the initiation of chromosome segregation Monday, July 16, 2018 Time Title 7:30 a.m. – 9:00 a.m. BREAKFAST 7:30 a.m. – 12:00 p.m. Conference Registration 9:00 a.m. – 12:15 p.m. GENERAL SESSION 1: Chromosome Structure Chair: Frank Uhlmann, The Francis Crick Institute 9:10 a.m. – 9:35 a.m. Doug Koshland, University of California Berkeley Cohesin, a complex mechanism for DNA binding 9:35 a.m. – 10:00 a.m. Christian Haering, European Molecular Biology Laboratory Condensin complexes structure chromosomes by active loop extrusion 10:00 a.m. – 10:20 a.m. Damien D'Amours, University of Ottawa Condensin ATPase motifs contribute differentially to the maintenance of chromosome morphology and genome stability 10:20 a.m. – 10:50 a.m. MORNING COFFEE BREAK & GROUP PHOTO 10:50 a.m. – 11:15 a.m. Kerry Bloom, University of North Carolina at Chapel Hill Fork pausing allows centromere DNA loop formation and kinetochore assembly 11:15 a.m. – 11:40 p.m. -
10/7/11 Page 1 CURRICULUM VITAE Sean J. Morrison PERSONAL
10/7/11 CURRICULUM VITAE Sean J. Morrison PERSONAL DATA Address: Children’s Research Institute University of Texas Southwestern Medical Center 5323 Harry Hines Boulevard Dallas, Texas, 75390-8502 Telephone: 214-633-1790 Fax: 214-648-5517 E-mail: [email protected] EDUCATION September 1986 - May 1991: B.Sc. with First Class Honors in Biology and Chemistry, Dalhousie University (Halifax, Canada) September 1991- June 1996: Ph.D. in Immunology, Stanford University (Stanford, CA). Supervisor, Dr. Irving L. Weissman. POSTDOCTORAL TRAINING July 1996 - August 1999: Postdoctoral Scholar in the laboratory of Dr. David J. Anderson, California Institute of Technology (Pasadena, CA). EMPLOYMENT AND ACADEMIC APPOINTMENTS September 1987 - September 1990 President, Endogro Systems Inc., a company that developed technology for the agricultural use of plant growth-promoting fungi. August 1999 – August 2004 Assistant Professor, Departments of Internal Medicine (Division of Molecular Medicine and Genetics) and Cell and Developmental Biology, University of Michigan. June 2000 – Present Investigator, Howard Hughes Medical Institute September 2004 – September 2008 Associate Professor, Departments of Internal Medicine (Division of Molecular Medicine and Genetics) and Cell and Developmental Biology; Research Associate Professor, Life Sciences Institute, University of Michigan. September 2005 – August 2011 Director, University of Michigan Center for Stem Cell Biology and Henry Sewall Professor in Medicine, University of Michigan September 2008 – August -
April 5, 2018
STUPKA UNDERGRADUATE RESEARCH SYMPOSIUM April 5, 2018 Presented by the Undergraduates of the Roy J. Carver Department of Biochemistry, Biophysics & Molecular Biology EVENTS SCHEDULE THURSDAY 8:30 am Breakfast – Open to all – Hosted by BBMB Breakfast Club Keynote and Alumni Speaker Meet and Greet Atrium 11:00 am Alumni and Stupka Family Reception and Lunch Atrium 12:10 pm Dr. Virginia Zakian Lunch Undergraduates and Graduates Only 1102 MBB 1:10 pm Dr. Douglas Weibel Lunch Undergraduates and Graduates Only 1102 MBB 2:10 pm Poster Session 1 Atrium 3:10 pm Poster Session 2 Atrium 4:10 pm Welcome Wendy Wintersteen, President of Iowa State University Beate Schmittmann, Dean of the College of Liberal Arts and Sciences 1414 MBB 4:20 pm Jena Gilbertson – STUDENT SPEAKER Imaging the Non-uniform Spatial Distribution Energy Dense Metabolites for Efficient Capture and Chemical Storage of Solar Energy by Plants 4:35 pm Dr. Virginia Zakian – KEYNOTE SPEAKER Stressing at the ends: telomerase regulation 5:15 pm Matthew Cook – STUDENT SPEAKER Optimizing the biosynthetic pathway producing UDP-xylose 5:30 pm Break and Refreshments 5:50 pm Andrew Tonsager – STUDENT SPEAKER Investigating the Arabidopsis QQS gene and its impact on carbon-nitrogen partitioning in Saccharomyces cerevisiae 6:05 pm Anthony Cyr, M.D, Ph.D – ALUMNI SPEAKER Breaking the Cycle: Mitochondrial responses to traumatic injury in cells of the innate immune system 6:30 pm Dr. Douglas Weibel – KEYNOTE SPEAKER Mechanical Genomics Reveals New Bacterial Biochemistry 7:10 pm Poster Awards 1414 MBB 7:15 pm Dinner Atrium 2 STUPKA 2018 TABLE OF CONTENTS REMEMBERING ROB 4 STUPKA COMMITTEE 5 POSTER SESSIONS 6 – 7 SPEAKERS 8 – 13 STUPKA SCHOLARS 14 – 15 SPONSORS 16 6 0 0 2 E C N I S SAVE THE DATE FOR THE 14TH ANNUAL Stupka Symposium Thursday, April 4, 2019 email: [email protected] website: stupka.bb.iastate.edu UNDERGRADUATE RESEARCH SYMPOSIUM 3 REMEMBERING ROB Rob Stupka was an undergraduate student majoring in Biochemistry at Iowa State University. -
VIRGINIA ARAXIE ZAKIAN Curriculum Vitae PRESENT POSITION and ADDRESS Harry C
VIRGINIA ARAXIE ZAKIAN Curriculum Vitae PRESENT POSITION AND ADDRESS Harry C. Wiess Professor in the Life Sciences Department of Molecular Biology Princeton University Princeton NJ 08544-1014 Phone: (609) 258-6770 ; FAX: (609) 258-1701 ; email: [email protected] CITIZENSHIP: U.S.A. RESEARCH INTERESTS Telomeres, DNA helicases, Chromosome stability, Genome integrity EDUCATION, RESEARCH EXPERIENCE, AND PROFESSIONAL POSITIONS A.B. 1970, Cornell University, College of Arts and Sciences, Ithaca, NY (Phi Beta Kappa, 1969; cum laude in Biology; distinction in all subjects; research Xenopus development, with Dr. A.W. Blackler). Ph.D. 1975, Yale University, Dept. of Biology (with Dr. Joseph G. Gall, DNA replication in Drosophila; NDF pre-doctoral fellowship). Postdoctoral Fellow 1975-76, Princeton University, Dept. of Biochemistry (with Dr. Arnold J. Levine, Replication of Adeno and SV40 viruses; NIH post doctoral fellowship) Postdoctoral Fellow 1976-78, University of Washington, Dept. of Genetics (with Dr. Walton L. Fangman, DNA replication in yeast; NIH post doctoral fellowship) Assistant Member 1979-83, Fred Hutchinson Cancer Research Center, Basic Sciences Associate Member 1984-1987, Fred Hutchinson Cancer Research Center, Basic Sciences Member 1987-1995, Fred Hutchinson Cancer Research Center, Basic Sciences (tenured position) Affiliate Faculty 1979-1995, U. of Washington (Depts. of Genetics and Pathology) Professor, Department of Molecular Biology, Princeton University, July 1995- to date Harry C. Wiess Professor in the Life Sciences,