Lichens- Role in Traditional Medicine and Drug Discovery S Malhotra, R Subban, a Singh
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The Lichens' Microbiota, Still a Mystery?
fmicb-12-623839 March 24, 2021 Time: 15:25 # 1 REVIEW published: 30 March 2021 doi: 10.3389/fmicb.2021.623839 The Lichens’ Microbiota, Still a Mystery? Maria Grimm1*, Martin Grube2, Ulf Schiefelbein3, Daniela Zühlke1, Jörg Bernhardt1 and Katharina Riedel1 1 Institute of Microbiology, University Greifswald, Greifswald, Germany, 2 Institute of Plant Sciences, Karl-Franzens-University Graz, Graz, Austria, 3 Botanical Garden, University of Rostock, Rostock, Germany Lichens represent self-supporting symbioses, which occur in a wide range of terrestrial habitats and which contribute significantly to mineral cycling and energy flow at a global scale. Lichens usually grow much slower than higher plants. Nevertheless, lichens can contribute substantially to biomass production. This review focuses on the lichen symbiosis in general and especially on the model species Lobaria pulmonaria L. Hoffm., which is a large foliose lichen that occurs worldwide on tree trunks in undisturbed forests with long ecological continuity. In comparison to many other lichens, L. pulmonaria is less tolerant to desiccation and highly sensitive to air pollution. The name- giving mycobiont (belonging to the Ascomycota), provides a protective layer covering a layer of the green-algal photobiont (Dictyochloropsis reticulata) and interspersed cyanobacterial cell clusters (Nostoc spec.). Recently performed metaproteome analyses Edited by: confirm the partition of functions in lichen partnerships. The ample functional diversity Nathalie Connil, Université de Rouen, France of the mycobiont contrasts the predominant function of the photobiont in production Reviewed by: (and secretion) of energy-rich carbohydrates, and the cyanobiont’s contribution by Dirk Benndorf, nitrogen fixation. In addition, high throughput and state-of-the-art metagenomics and Otto von Guericke University community fingerprinting, metatranscriptomics, and MS-based metaproteomics identify Magdeburg, Germany Guilherme Lanzi Sassaki, the bacterial community present on L. -
Genetic Variation Within and Among Populations of the Threatened Lichen Lobaria Pulmonaria in Switzerland and Implications for I
MEC820.fm Page 2049 Saturday, December 18, 1999 1:20 PM Molecular Ecology (1999) 8, 2049–2059 GeneticBlackwell Science, Ltd variation within and among populations of the threatened lichen Lobaria pulmonaria in Switzerland and implications for its conservation S. ZOLLER,* F. LUTZONI† and C. SCHEIDEGGER* *Swiss Federal Institute for Forest, Snow and Landscape Research, CH-8903 Birmensdorf, Switzerland, †Department of Botany, The Field Museum of Natural History, Chicago IL 60605, USA Abstract The foliose epiphytic lichen Lobaria pulmonaria has suffered a significant decline in European lowlands during the last decades and therefore is considered as endangered throughout Europe. An assessment of the genetic variability is necessary to formulate biologically sound conservation recommendations for this species. We investigated the genetic diversity of the fungal symbiont of L. pulmonaria using 143 specimens sampled from six populations (two small, one medium, three large) in the lowland, the Jura Moun- tains, the pre-Alps and the Alps of Switzerland. Among all nuclear and mitochondrial regions sequenced for this study, variability was found only in the internal transcribed spacer (ITS I), with three polymorphic sites, and in the nuclear ribosomal large subunit (nrLSU), with four polymorphic sites. The variable sites in the nrLSU are all located within a putative spliceosomal intron. We sequenced these two regions for 81 specimens and detected six genotypes. Two genotypes were common, two were found only in the more diverse populations and two were found only in one population each. There was no correlation between population size and genetic diversity. The highest genetic diversity was found in populations where the fungal symbiont is reproducing sexually. -
A Study of the Pruinose Species of Hypogymnia (Parmeliaceae, Ascomycota) from China
See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/259425488 A study of the pruinose species of Hypogymnia (Parmeliaceae, Ascomycota) from China Article in The Lichenologist · November 2012 DOI: 10.1017/S0024282912000473 CITATIONS READS 3 134 2 authors, including: Xinli Wei Institute of Microbiology Chinese Academy of Sciences 65 PUBLICATIONS 355 CITATIONS SEE PROFILE Some of the authors of this publication are also working on these related projects: Lichen species composition and distribution in China View project Discovering the possibility of life on Mars View project All content following this page was uploaded by Xinli Wei on 09 June 2015. The user has requested enhancement of the downloaded file. The Lichenologist 44(6): 783–793 (2012) 6 British Lichen Society, 2012 doi:10.1017/S0024282912000473 A study of the pruinose species of Hypogymnia (Parmeliaceae, Ascomycota) from China Xin-Li WEI and Jiang-Chun WEI Abstract: Six pruinose species of Hypogymnia are reported in this paper, including one new species Hypogymnia pruinoidea. The type of Hypogymnia pseudopruinosa was found to be a mixture with H. laccata. Hypogymnia pseudopruinosa is therefore typified with a lectotype, and the description of H. pseudopruinosa is revised. Distributions of the six pruinose species are given and discussed. Com- ments on differences and similarities between pruinose species of Hypogymnia are made. Diagnostic characters of each species, and a key to the pruinose species of Hypogymnia in China, are also provided. Key words: H. pruinoidea, H. pseudopruinosa, lichen substances, pruina Accepted for publication 6 June 2012 Introduction Materials and Methods Although over 100 species of Hypogymnia Specimens treated here are preserved in the Lichen (Nyl.) Nyl. -
Fossil Usnea and Similar Fruticose Lichens from Palaeogene Amber
The Lichenologist (2020), 52, 319–324 doi:10.1017/S0024282920000286 Standard Paper Fossil Usnea and similar fruticose lichens from Palaeogene amber Ulla Kaasalainen1 , Jouko Rikkinen2,3 and Alexander R. Schmidt1 1Department of Geobiology, University of Göttingen, Göttingen, Germany; 2Finnish Museum of Natural History, University of Helsinki, Helsinki, Finland and 3Organismal and Evolutionary Biology Research Programme, Faculty of Biological and Environmental Sciences, University of Helsinki, Helsinki, Finland Abstract Fruticose lichens of the genus Usnea Dill. ex Adans. (Parmeliaceae), generally known as beard lichens, are among the most iconic epiphytic lichens in modern forest ecosystems. Many of the c. 350 currently recognized species are widely distributed and have been used as bioin- dicators in air pollution studies. Here we demonstrate that usneoid lichens were present in the Palaeogene amber forests of Europe. Based on general morphology and annular cortical fragmentation, one fossil from Baltic amber can be assigned to the extant genus Usnea. The unique type of cortical cracking indirectly demonstrates the presence of a central cord that keeps the branch intact even when its cortex is split into vertebrae-like segments. This evolutionary innovation has remained unchanged since the Palaeogene, contributing to the considerable ecological flexibility that allows Usnea species to flourish in a wide variety of ecosystems and climate regimes. The fossil sets the minimum age for Usnea to 34 million years (late Eocene). While the other similar fossils from Baltic and Bitterfeld ambers cannot be definitely assigned to the same genus, they underline the diversity of pendant lichens in Palaeogene amber forests. Key words: Ascomycota, Baltic amber, Bitterfeld amber, lichen fossils (Accepted 16 April 2020) Introduction et al. -
Icmadophila Aversa and Piccolia Conspersa, Two Lichen Species New to Bolivia
Polish Botanical Journal 55(1): 217–221, 2010 ICMADOPHILA AVERSA AND PICCOLIA CONSPERSA, TWO LICHEN SPECIES NEW TO BOLIVIA KARINA WILK Abstract. The species Icmadophila aversa and Piccolia conspersa are reported as new to the lichen biota of Bolivia. The studied material was collected in Madidi National Park (NW Bolivia). The species are briefl y characterized and their ecology and distribution are discussed. Key words: lichenized fungi, new records, Madidi region, Andes, South America Karina Wilk, Laboratory of Lichenology, W. Szafer Institute of Botany, Polish Academy of Sciences, Lubicz 46, 31-512 Kraków, Poland; e-mail: [email protected] INTRODUCTION Bolivia is still one of the countries least studied While studying the material collected in the biologically, but the data already available indi- Madidi region I identifi ed two interesting lichen cate a potentially high level of biodiversity (Ibisch species – Icmadophila aversa and Piccolia con- & Mérida 2004). Knowledge of the cryptogams, spersa. The species are reported here as new to Bo- including lichens, is particularly defi cient (Feuerer livia. Brief descriptions and notes on their ecology et al. 1998). In the last decade, however, licheno- and worldwide distribution are provided. logical studies have progressed in Bolivia. The most recent works have provided many new dis- MATERIAL AND METHODS coveries: records new to the country, continent or Southern Hemisphere, and species new to The study is based on material collected in 2006–2007 in science (e.g., Ferraro 2002; Feuerer & Sipman Madidi National Park. The collection sites are located in 2005; Flakus & Wilk 2006; Flakus & Kukwa 2007; the Cordillera Apolobamba (Fig. -
The Puzzle of Lichen Symbiosis
Digital Comprehensive Summaries of Uppsala Dissertations from the Faculty of Science and Technology 1503 The puzzle of lichen symbiosis Pieces from Thamnolia IOANA ONUT, -BRÄNNSTRÖM ACTA UNIVERSITATIS UPSALIENSIS ISSN 1651-6214 ISBN 978-91-554-9887-0 UPPSALA urn:nbn:se:uu:diva-319639 2017 Dissertation presented at Uppsala University to be publicly examined in Lindhalsalen, EBC, Norbyvägen 14, Uppsala, Thursday, 1 June 2017 at 09:15 for the degree of Doctor of Philosophy. The examination will be conducted in English. Faculty examiner: Associate Professor Anne Pringle (University of Wisconsin-Madison, Department of Botany). Abstract Onuț-Brännström, I. 2017. The puzzle of lichen symbiosis. Pieces from Thamnolia. Digital Comprehensive Summaries of Uppsala Dissertations from the Faculty of Science and Technology 1503. 62 pp. Uppsala: Acta Universitatis Upsaliensis. ISBN 978-91-554-9887-0. Symbiosis brought important evolutionary novelties to life on Earth. Lichens, the symbiotic entities formed by fungi, photosynthetic organisms and bacteria, represent an example of a successful adaptation in surviving hostile environments. Yet many aspects of the lichen symbiosis remain unexplored. This thesis aims at bringing insights into lichen biology and the importance of symbiosis in adaptation. I am using as model system a successful colonizer of tundra and alpine environments, the worm lichens Thamnolia, which seem to only reproduce vegetatively through symbiotic propagules. When the genetic architecture of the mating locus of the symbiotic fungal partner was analyzed with genomic and transcriptomic data, a sexual self-incompatible life style was revealed. However, a screen of the mating types ratios across natural populations detected only one of the mating types, suggesting that Thamnolia has no potential for sexual reproduction because of lack of mating partners. -
Cuivre Bryophytes
Trip Report for: Cuivre River State Park Species Count: 335 Date: Multiple Visits Lincoln County Agency: MODNR Location: Lincoln Hills - Bryophytes Participants: Bryophytes from Natural Resource Inventory Database Bryophyte List from NRIDS and Bruce Schuette Species Name (Synonym) Common Name Family COFC COFW Acarospora unknown Identified only to Genus Acarosporaceae Lichen Acrocordia megalospora a lichen Monoblastiaceae Lichen Amandinea dakotensis a button lichen (crustose) Physiaceae Lichen Amandinea polyspora a button lichen (crustose) Physiaceae Lichen Amandinea punctata a lichen Physiaceae Lichen Amanita citrina Citron Amanita Amanitaceae Fungi Amanita fulva Tawny Gresette Amanitaceae Fungi Amanita vaginata Grisette Amanitaceae Fungi Amblystegium varium common willow moss Amblystegiaceae Moss Anisomeridium biforme a lichen Monoblastiaceae Lichen Anisomeridium polypori a crustose lichen Monoblastiaceae Lichen Anomodon attenuatus common tree apron moss Anomodontaceae Moss Anomodon minor tree apron moss Anomodontaceae Moss Anomodon rostratus velvet tree apron moss Anomodontaceae Moss Armillaria tabescens Ringless Honey Mushroom Tricholomataceae Fungi Arthonia caesia a lichen Arthoniaceae Lichen Arthonia punctiformis a lichen Arthoniaceae Lichen Arthonia rubella a lichen Arthoniaceae Lichen Arthothelium spectabile a lichen Uncertain Lichen Arthothelium taediosum a lichen Uncertain Lichen Aspicilia caesiocinerea a lichen Hymeneliaceae Lichen Aspicilia cinerea a lichen Hymeneliaceae Lichen Aspicilia contorta a lichen Hymeneliaceae Lichen -
Lectotypification of Usnea Confusa (Parmeliaceae, Ascomycota)
Bull. Natl. Mus. Nat. Sci., Ser. B, 45(2), pp. 63–70, May 22, 2019 Lectotypification of Usnea confusa (Parmeliaceae, Ascomycota) Yoshihito Ohmura1, * and Philippe Clerc2 1 Department of Botany, National Museum of Nature and Science, 4–1–1 Amakubo Tsukuba, Ibaraki 305–0005, Japan 2 Conservatoire et Jardin botaniques de la Ville de Genève, Geneva, Switzerland * E-mail: [email protected] (Received 25 February 2019; accepted 27 March 2019) Abstract The original material of Usnea confusa Asahina consists of several thalli glued on a cardboard. In order to avoid any future taxonomic confusion especially presence or absence of “isidiate soredia”, a single specimen with numerous isidiofibrils developing on the soralia was cho- sen as lectotype. The lectotype of U. confusa contains usnic, salazinic, constictic acids and trace amount of protocetraric acid as the secondary substances. ITS rDNA sequences of Japanese and Taiwanese specimens that have the same morphology and chemistry with the lectotype form two distinct clades nested within the strongly supported clade representing the core group of Usnea cornuta (containing U. cornuta Körber s.str.). Our molecular phylogenetic result based only on ITS rDNA sequences doesn’t allow to confirm or contradict the conspecificity of U. confusa with U. cornuta. Key words: isidiofibrils, ITS rDNA, lectotype, lichenized fungi, phylogeny, soralia, taxonomy. Introduction type (Gerlach et al., 2017), the density of medul- lary hyphae varies from dense to lax; the many In lichenology, the genus Usnea Adans. is chemotypes designated by main substances such known as one of the most difficult genera due to as: salazinic, constictic, stictic, norstictic, proto- the high morphological variability within species cetraric, psoromic, galbinic, thamnolic or lobaric (Clerc, 1998). -
Insights Into the Ecology and Genetics of Lichens with a Cyanobacterial Photobiont
Insights into the Ecology and Genetics of Lichens with a Cyanobacterial Photobiont Katja Fedrowitz Faculty of Natural Resources and Agricultural Sciences Department of Ecology Uppsala Doctoral Thesis Swedish University of Agricultural Sciences Uppsala 2011 Acta Universitatis agriculturae Sueciae 2011:96 Cover: Lobaria pulmonaria, Nephroma bellum, and fallen bark in an old-growth forest in Finland with Populus tremula. Part of the tRNALeu (UAA) sequence in an alignment. (photos: K. Fedrowitz) ISSN 1652-6880 ISBN 978-91-576-7640-5 © 2011 Katja Fedrowitz, Uppsala Print: SLU Service/Repro, Uppsala 2011 Insights into the Ecology and Genetics of Lichens with a Cyanobacterial Photobiont Abstract Nature conservation requires an in-depth understanding of the ecological processes that influence species persistence in the different phases of a species life. In lichens, these phases comprise dispersal, establishment, and growth. This thesis aimed at increasing the knowledge on epiphytic cyanolichens by studying different aspects linked to these life stages, including species colonization extinction dynamics, survival and vitality of lichen transplants, and the genetic symbiont diversity in the genus Nephroma. Paper I reveals that local colonizations, stochastic, and deterministic extinctions occur in several epiphytic macrolichens. Species habitat-tracking metapopulation dynamics could partly be explained by habitat quality and size, spatial connectivity, and possibly facilitation by photobiont sharing. Simulations of species future persistence suggest stand-level extinction risk for some infrequent sexually dispersed species, especially when assuming low tree numbers and observed tree fall rates. Forestry practices influence the natural occurrence of species, and retention of trees at logging is one measure to maintain biodiversity. However, their long-term benefit for biodiversity is still discussed. -
Thamnolia Subuliformis – (Ehrh.) Culb
SPECIES: Scientific [common] Thamnolia subuliformis – (Ehrh.) Culb. [Whiteworm lichen] Forest: Salmon–Challis National Forest Forest Reviewer: Jessica M Dhaemers; Brittni Brown; John Proctor, Rose Lehman Date of Review: 10/13/2017; 13 February 2018; 15 March 2018 Forest concurrence (or NO recommendation if new) for inclusion of species on list of potential SCC: (Enter Yes or No) FOREST REVIEW RESULTS: 1. The Forest concurs or recommends the species for inclusion on the list of potential SCC: Yes___ No_X__ 2. Rationale for not concurring is based on (check all that apply): Species is not native to the plan area _______ Species is not known to occur in the plan area _______ Species persistence in the plan area is not of substantial concern ___X____ FOREST REVIEW INFORMATION: 1. Is the Species Native to the Plan Area? Yes _X_ No___ If no, provide explanation and stop assessment. 2. Is the Species Known to Occur within the Planning Area? Yes _X _ No___ If no, stop assessment. Table 1. All Known Occurrences, Years, and Frequency within the Planning Area Year Number of Location of Observations (USFS Source of Information Observed Individuals District, Town, River, Road Intersection, HUC, etc.) 1987 Not Middle Fork Ranger District IDFG Element Occurrence EO reported Along the Middle Fork Salmon Number: 1 River, across from Hospital Bar; EO_ID: 3589 in Frank Church–River of No Old EO_ID: 9675 Return Wilderness and Middle Fork Salmon River Wild and Scenic River Corridor (Wild classification); moss-covered, north-facing small cliff band, 4,100 feet in elevation 1996 Not Lost River Ranger District Consortium of North American reported Vicinity of Mill Lake in Mill Lake Lichen Herbarium. -
Monitoring Air Quality in Class I Wilderness Areas of the Northeastern United States Using Lichens and Bryophytes Alison C
United States Department of Agriculture Monitoring Air Quality in Class I Wilderness Areas of the Northeastern United States Using Lichens and Bryophytes Alison C. Dibble, James W. Hinds, Ralph Perron, Natalie Cleavitt, Richard L. Poirot, and Linda H. Pardo Forest Service Northern Research Station General Technical Report NRS-165 December 2016 1 Abstract To address a need for air quality and lichen monitoring information for the Northeast, we compared bulk chemistry data from 2011-2013 to baseline surveys from 1988 and 1993 in three Class I Wilderness areas of New Hampshire and Vermont. Plots were within the White Mountain National Forest (Presidential Range—Dry River Wilderness and Great Gulf Wilderness, New Hampshire) and the Green Mountain National Forest (Lye Brook Wilderness, Vermont). We sampled epiphyte communities and found 58 macrolichen species and 55 bryophyte species. We also analyzed bulk samples for total N, total S, and 27 additional elements. We detected a decrease in Pb at the level of the National Forest and in a subset of plots. Low lichen richness and poor thallus condition at Lye Brook corresponded to higher N and S levels at these sites. Lichen thallus condition was best where lichen species richness was also high. Highest Hg content, from a limited subset, was on the east slope of Mt. Washington near the head of Great Gulf. Most dominant lichens in good condition were associated with conifer boles or acidic substrates. The status regarding N and S tolerance for many lichens in the northeastern United States is not clear, so the influence of N pollution on community data cannot be fully assessed. -
Umbilicariaceae Phylogeny TAXON 66 (6) • December 2017: 1282–1303
Davydov & al. • Umbilicariaceae phylogeny TAXON 66 (6) • December 2017: 1282–1303 Umbilicariaceae (lichenized Ascomycota) – Trait evolution and a new generic concept Evgeny A. Davydov,1 Derek Peršoh2 & Gerhard Rambold3 1 Altai State University, Lenin Ave. 61, Barnaul, 656049 Russia 2 Ruhr-Universität Bochum, AG Geobotanik, Gebäude ND 03/170, Universitätsstraße 150, 44801 Bochum, Germany 3 University of Bayreuth, Plant Systematics, Mycology Dept., Universitätsstraße 30, NW I, 95445 Bayreuth, Germany Author for correspondence: Evgeny A. Davydov, [email protected] ORCID EAD, http://orcid.org/0000-0002-2316-8506; DP, http://orcid.org/0000-0001-5561-0189 DOI https://doi.org/10.12705/666.2 Abstract To reconstruct hypotheses on the evolution of Umbilicariaceae, 644 sequences from three independent DNA regions were used, 433 of which were newly produced. The study includes a representative fraction (presumably about 80%) of the known species diversity of the Umbilicariaceae s.str. and is based on the phylograms obtained using maximum likelihood and a Bayesian phylogenetic inference framework. The analyses resulted in the recognition of eight well-supported clades, delimited by a combination of morphological and chemical features. None of the previous classifications within Umbilicariaceae s.str. were supported by the phylogenetic analyses. The distribution of the diagnostic morphological and chemical traits against the molecular phylogenetic topology revealed the following patterns of evolution: (1) Rhizinomorphs were gained at least four times independently and are lacking in most clades grouping in the proximity of Lasallia. (2) Asexual reproductive structures, i.e., thalloconidia and lichenized dispersal units, appear more or less mutually exclusive, being restricted to different clades.