Monitoring Air Quality in Class I Wilderness Areas of the Northeastern United States Using Lichens and Bryophytes Alison C
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Phylogeny of the Cetrarioid Core (Parmeliaceae) Based on Five
The Lichenologist 41(5): 489–511 (2009) © 2009 British Lichen Society doi:10.1017/S0024282909990090 Printed in the United Kingdom Phylogeny of the cetrarioid core (Parmeliaceae) based on five genetic markers Arne THELL, Filip HÖGNABBA, John A. ELIX, Tassilo FEUERER, Ingvar KÄRNEFELT, Leena MYLLYS, Tiina RANDLANE, Andres SAAG, Soili STENROOS, Teuvo AHTI and Mark R. D. SEAWARD Abstract: Fourteen genera belong to a monophyletic core of cetrarioid lichens, Ahtiana, Allocetraria, Arctocetraria, Cetraria, Cetrariella, Cetreliopsis, Flavocetraria, Kaernefeltia, Masonhalea, Nephromopsis, Tuckermanella, Tuckermannopsis, Usnocetraria and Vulpicida. A total of 71 samples representing 65 species (of 90 worldwide) and all type species of the genera are included in phylogentic analyses based on a complete ITS matrix and incomplete sets of group I intron, -tubulin, GAPDH and mtSSU sequences. Eleven of the species included in the study are analysed phylogenetically for the first time, and of the 178 sequences, 67 are newly constructed. Two phylogenetic trees, one based solely on the complete ITS-matrix and a second based on total information, are similar, but not entirely identical. About half of the species are gathered in a strongly supported clade composed of the genera Allocetraria, Cetraria s. str., Cetrariella and Vulpicida. Arctocetraria, Cetreliopsis, Kaernefeltia and Tuckermanella are monophyletic genera, whereas Cetraria, Flavocetraria and Tuckermannopsis are polyphyletic. The taxonomy in current use is compared with the phylogenetic results, and future, probable or potential adjustments to the phylogeny are discussed. The single non-DNA character with a strong correlation to phylogeny based on DNA-sequences is conidial shape. The secondary chemistry of the poorly known species Cetraria annae is analyzed for the first time; the cortex contains usnic acid and atranorin, whereas isonephrosterinic, nephrosterinic, lichesterinic, protolichesterinic and squamatic acids occur in the medulla. -
Genetic Variation Within and Among Populations of the Threatened Lichen Lobaria Pulmonaria in Switzerland and Implications for I
MEC820.fm Page 2049 Saturday, December 18, 1999 1:20 PM Molecular Ecology (1999) 8, 2049–2059 GeneticBlackwell Science, Ltd variation within and among populations of the threatened lichen Lobaria pulmonaria in Switzerland and implications for its conservation S. ZOLLER,* F. LUTZONI† and C. SCHEIDEGGER* *Swiss Federal Institute for Forest, Snow and Landscape Research, CH-8903 Birmensdorf, Switzerland, †Department of Botany, The Field Museum of Natural History, Chicago IL 60605, USA Abstract The foliose epiphytic lichen Lobaria pulmonaria has suffered a significant decline in European lowlands during the last decades and therefore is considered as endangered throughout Europe. An assessment of the genetic variability is necessary to formulate biologically sound conservation recommendations for this species. We investigated the genetic diversity of the fungal symbiont of L. pulmonaria using 143 specimens sampled from six populations (two small, one medium, three large) in the lowland, the Jura Moun- tains, the pre-Alps and the Alps of Switzerland. Among all nuclear and mitochondrial regions sequenced for this study, variability was found only in the internal transcribed spacer (ITS I), with three polymorphic sites, and in the nuclear ribosomal large subunit (nrLSU), with four polymorphic sites. The variable sites in the nrLSU are all located within a putative spliceosomal intron. We sequenced these two regions for 81 specimens and detected six genotypes. Two genotypes were common, two were found only in the more diverse populations and two were found only in one population each. There was no correlation between population size and genetic diversity. The highest genetic diversity was found in populations where the fungal symbiont is reproducing sexually. -
A Study of the Pruinose Species of Hypogymnia (Parmeliaceae, Ascomycota) from China
See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/259425488 A study of the pruinose species of Hypogymnia (Parmeliaceae, Ascomycota) from China Article in The Lichenologist · November 2012 DOI: 10.1017/S0024282912000473 CITATIONS READS 3 134 2 authors, including: Xinli Wei Institute of Microbiology Chinese Academy of Sciences 65 PUBLICATIONS 355 CITATIONS SEE PROFILE Some of the authors of this publication are also working on these related projects: Lichen species composition and distribution in China View project Discovering the possibility of life on Mars View project All content following this page was uploaded by Xinli Wei on 09 June 2015. The user has requested enhancement of the downloaded file. The Lichenologist 44(6): 783–793 (2012) 6 British Lichen Society, 2012 doi:10.1017/S0024282912000473 A study of the pruinose species of Hypogymnia (Parmeliaceae, Ascomycota) from China Xin-Li WEI and Jiang-Chun WEI Abstract: Six pruinose species of Hypogymnia are reported in this paper, including one new species Hypogymnia pruinoidea. The type of Hypogymnia pseudopruinosa was found to be a mixture with H. laccata. Hypogymnia pseudopruinosa is therefore typified with a lectotype, and the description of H. pseudopruinosa is revised. Distributions of the six pruinose species are given and discussed. Com- ments on differences and similarities between pruinose species of Hypogymnia are made. Diagnostic characters of each species, and a key to the pruinose species of Hypogymnia in China, are also provided. Key words: H. pruinoidea, H. pseudopruinosa, lichen substances, pruina Accepted for publication 6 June 2012 Introduction Materials and Methods Although over 100 species of Hypogymnia Specimens treated here are preserved in the Lichen (Nyl.) Nyl. -
Cuivre Bryophytes
Trip Report for: Cuivre River State Park Species Count: 335 Date: Multiple Visits Lincoln County Agency: MODNR Location: Lincoln Hills - Bryophytes Participants: Bryophytes from Natural Resource Inventory Database Bryophyte List from NRIDS and Bruce Schuette Species Name (Synonym) Common Name Family COFC COFW Acarospora unknown Identified only to Genus Acarosporaceae Lichen Acrocordia megalospora a lichen Monoblastiaceae Lichen Amandinea dakotensis a button lichen (crustose) Physiaceae Lichen Amandinea polyspora a button lichen (crustose) Physiaceae Lichen Amandinea punctata a lichen Physiaceae Lichen Amanita citrina Citron Amanita Amanitaceae Fungi Amanita fulva Tawny Gresette Amanitaceae Fungi Amanita vaginata Grisette Amanitaceae Fungi Amblystegium varium common willow moss Amblystegiaceae Moss Anisomeridium biforme a lichen Monoblastiaceae Lichen Anisomeridium polypori a crustose lichen Monoblastiaceae Lichen Anomodon attenuatus common tree apron moss Anomodontaceae Moss Anomodon minor tree apron moss Anomodontaceae Moss Anomodon rostratus velvet tree apron moss Anomodontaceae Moss Armillaria tabescens Ringless Honey Mushroom Tricholomataceae Fungi Arthonia caesia a lichen Arthoniaceae Lichen Arthonia punctiformis a lichen Arthoniaceae Lichen Arthonia rubella a lichen Arthoniaceae Lichen Arthothelium spectabile a lichen Uncertain Lichen Arthothelium taediosum a lichen Uncertain Lichen Aspicilia caesiocinerea a lichen Hymeneliaceae Lichen Aspicilia cinerea a lichen Hymeneliaceae Lichen Aspicilia contorta a lichen Hymeneliaceae Lichen -
Lectotypification of Usnea Confusa (Parmeliaceae, Ascomycota)
Bull. Natl. Mus. Nat. Sci., Ser. B, 45(2), pp. 63–70, May 22, 2019 Lectotypification of Usnea confusa (Parmeliaceae, Ascomycota) Yoshihito Ohmura1, * and Philippe Clerc2 1 Department of Botany, National Museum of Nature and Science, 4–1–1 Amakubo Tsukuba, Ibaraki 305–0005, Japan 2 Conservatoire et Jardin botaniques de la Ville de Genève, Geneva, Switzerland * E-mail: [email protected] (Received 25 February 2019; accepted 27 March 2019) Abstract The original material of Usnea confusa Asahina consists of several thalli glued on a cardboard. In order to avoid any future taxonomic confusion especially presence or absence of “isidiate soredia”, a single specimen with numerous isidiofibrils developing on the soralia was cho- sen as lectotype. The lectotype of U. confusa contains usnic, salazinic, constictic acids and trace amount of protocetraric acid as the secondary substances. ITS rDNA sequences of Japanese and Taiwanese specimens that have the same morphology and chemistry with the lectotype form two distinct clades nested within the strongly supported clade representing the core group of Usnea cornuta (containing U. cornuta Körber s.str.). Our molecular phylogenetic result based only on ITS rDNA sequences doesn’t allow to confirm or contradict the conspecificity of U. confusa with U. cornuta. Key words: isidiofibrils, ITS rDNA, lectotype, lichenized fungi, phylogeny, soralia, taxonomy. Introduction type (Gerlach et al., 2017), the density of medul- lary hyphae varies from dense to lax; the many In lichenology, the genus Usnea Adans. is chemotypes designated by main substances such known as one of the most difficult genera due to as: salazinic, constictic, stictic, norstictic, proto- the high morphological variability within species cetraric, psoromic, galbinic, thamnolic or lobaric (Clerc, 1998). -
A New Species of Allocetraria (Parmeliaceae, Ascomycota) in China
The Lichenologist 47(1): 31–34 (2015) 6 British Lichen Society, 2015 doi:10.1017/S0024282914000528 A new species of Allocetraria (Parmeliaceae, Ascomycota) in China Rui-Fang WANG, Xin-Li WEI and Jiang-Chun WEI Abstract: Allocetraria yunnanensis R. F. Wang, X. L. Wei & J. C. Wei is described as a new species from the Yunnan Province of China, and is characterized by having a shiny upper surface, strongly wrinkled lower surface, and marginal pseudocyphellae present on the lower side in the form of a white continuous line or spot. The phylogenetic analysis based on nrDNA ITS sequences suggests that the new species is related to A. sinensis X. Q. Gao. Key words: Allocetraria yunnanensis, lichen, taxonomy Accepted for publication 26 June 2014 Introduction genus, as all ten species have been reported there (Kurokawa & Lai 1991; Thell et al. The lichenized genus Allocetraria Kurok. & 1995; Randlane et al. 2001; Wang et al. M. J. Lai was described in 1991, with a new 2014). During our taxonomic study of Allo- species A. isidiigera Kurok. & M. J. Lai, and cetraria, a new species was found. two new combinations: A. ambigua (C. Bab.) Kurok. & M. J. Lai and A. stracheyi (C. Bab.) Kurok. & M. J. Lai (Kurokawa & Lai 1991). The main distribution area of Allocetraria Materials and Methods species was reported to be in the Himalayas, A dissecting microscope (ZEISS Stemi SV11) and com- including China, India, and Nepal. pound microscope (ZEISS Axioskop 2 plus) were used Allocetraria is characterized by dichoto- to study the morphology and anatomy of the specimens. Colour test reagents [10% aqueous KOH, saturated mously or subdichotomously branched lobes aqueous Ca(OCl)2, and concentrated alcoholic p- and a foliose to suberect or erect thallus with phenylenediamine] and thin-layer chromatography sparse rhizines, angular to sublinear pseudo- (TLC, solvent system C) were used for the detection cyphellae, palisade plectenchymatous upper of lichen substances (Culberson & Kristinsson 1970; Culberson 1972). -
Assessment of Lichens As Biomonitors of Heavy Metal Pollution in Selected Mining Area, Slovakia Amer H
ISSN-1996-918X Cross Mark Pak. J. Anal. Environ. Chem. Vol. 22, No. 1 (2021) 53 – 59 http://doi.org/10.21743/pjaec/2021.06.07 Assessment of Lichens as Biomonitors of Heavy Metal Pollution in Selected Mining Area, Slovakia Amer H. Tarawneh1, Ivan Salamon2*, Rakan M. Altarawneh3, Jozef Mitra1 and Anastassiya Gadetskaya4 1Tafila Technical University, Department of Chemistry and Chemical Technology, P.O.Box 179, Tafila 66110, Jordan. 2University of Presov, Faculty of Humanities and Natural Science, Department of Ecology, 01, 17th November St., 081 16, Presov, Slovakia. 3Chemistry Department, Faculty of Science, Mutah University, Karak 61710, Jordan. 4School of Chemistry and Chemical Technology, Al-Farabi Kazakh National University, Almaty 050040, Kazakhstan. *Corresponding Author Email: [email protected] Received 07 September 2020, Revised 23 April 2021, Accepted 26 April 2021 -------------------------------------------------------------------------------------------------------------------------------------------- Abstract Lichens have widely been used as bioindicators to reflect the quality of the environment. The present study was conducted to investigate the lichens diversity that grows on the surface of waste heaps from an abandoned old copper mine in Mlynky, Slovakia. In spite of the heavy metal- contaminated environment, we documented twenty species of lichens in the selected site. Taxonomically the most numerous group were represented by Cladonia with seven species, as well other species; namely, Acarospora fuscata, Cetraria islandica, Dermatocarpon miniatum, Hypogymnia physodes, Hypogymnia tubulosa, Lecanora subaurea, Lepraria incana, Physcia aipolia, Porpidia macrocarpa, Pseudevernia furfuracea, Rhizocarpon geographicum and Xanthoria parietina. The content of selected heavy metals (Cu, Fe, and Zn) in the predominant lichens Cetraria islandica, Cladonia digitata, Cladonia pyxidata, Hypogymnia physodes and Pseudevernia furfuracea were analyzed. -
Lichens of Alaska's South Coast
United States Department of Agriculture Lichens of Alaska’s South Coast Forest Service R10-RG-190 Alaska Region Reprint April 2014 WHAT IS A LICHEN? Lichens are specialized fungi that “farm” algae as a food source. Unlike molds, mildews, and mushrooms that parasitize or scavenge food from other organisms, the fungus of a lichen cultivates tiny algae and / or blue-green bacteria (called cyanobacteria) within the fabric of interwoven fungal threads that form the body of the lichen (or thallus). The algae and cyanobacteria produce food for themselves and for the fungus by converting carbon dioxide and water into sugars using the sun’s energy (photosynthesis). Thus, a lichen is a combination of two or sometimes three organisms living together. Perhaps the most important contribution of the fungus is to provide a protective habitat for the algae or cyanobacteria. The green or blue-green photosynthetic layer is often visible between two white fungal layers if a piece of lichen thallus is torn off. Most lichen-forming fungi cannot exist without the photosynthetic partner because they have become dependent on them for survival. But in all cases, a fungus looks quite different in the lichenized form compared to its free-living form. HOW DO LICHENS REPRODUCE? Lichens sexually reproduce with fruiting bodies of various shapes and colors that can often look like miniature mushrooms. These are called apothecia (Fig. 1) and contain spores that germinate and Figure 1. Apothecia, fruiting grow into the fungus. Each bodies fungus must find the right photosynthetic partner in order to become a lichen. Lichens reproduce asexually in several ways. -
H. Thorsten Lumbsch VP, Science & Education the Field Museum 1400
H. Thorsten Lumbsch VP, Science & Education The Field Museum 1400 S. Lake Shore Drive Chicago, Illinois 60605 USA Tel: 1-312-665-7881 E-mail: [email protected] Research interests Evolution and Systematics of Fungi Biogeography and Diversification Rates of Fungi Species delimitation Diversity of lichen-forming fungi Professional Experience Since 2017 Vice President, Science & Education, The Field Museum, Chicago. USA 2014-2017 Director, Integrative Research Center, Science & Education, The Field Museum, Chicago, USA. Since 2014 Curator, Integrative Research Center, Science & Education, The Field Museum, Chicago, USA. 2013-2014 Associate Director, Integrative Research Center, Science & Education, The Field Museum, Chicago, USA. 2009-2013 Chair, Dept. of Botany, The Field Museum, Chicago, USA. Since 2011 MacArthur Associate Curator, Dept. of Botany, The Field Museum, Chicago, USA. 2006-2014 Associate Curator, Dept. of Botany, The Field Museum, Chicago, USA. 2005-2009 Head of Cryptogams, Dept. of Botany, The Field Museum, Chicago, USA. Since 2004 Member, Committee on Evolutionary Biology, University of Chicago. Courses: BIOS 430 Evolution (UIC), BIOS 23410 Complex Interactions: Coevolution, Parasites, Mutualists, and Cheaters (U of C) Reading group: Phylogenetic methods. 2003-2006 Assistant Curator, Dept. of Botany, The Field Museum, Chicago, USA. 1998-2003 Privatdozent (Assistant Professor), Botanical Institute, University – GHS - Essen. Lectures: General Botany, Evolution of lower plants, Photosynthesis, Courses: Cryptogams, Biology -
Habitat Quality and Disturbance Drive Lichen Species Richness in a Temperate Biodiversity Hotspot
Oecologia (2019) 190:445–457 https://doi.org/10.1007/s00442-019-04413-0 COMMUNITY ECOLOGY – ORIGINAL RESEARCH Habitat quality and disturbance drive lichen species richness in a temperate biodiversity hotspot Erin A. Tripp1,2 · James C. Lendemer3 · Christy M. McCain1,2 Received: 23 April 2018 / Accepted: 30 April 2019 / Published online: 15 May 2019 © Springer-Verlag GmbH Germany, part of Springer Nature 2019 Abstract The impacts of disturbance on biodiversity and distributions have been studied in many systems. Yet, comparatively less is known about how lichens–obligate symbiotic organisms–respond to disturbance. Successful establishment and development of lichens require a minimum of two compatible yet usually unrelated species to be present in an environment, suggesting disturbance might be particularly detrimental. To address this gap, we focused on lichens, which are obligate symbiotic organ- isms that function as hubs of trophic interactions. Our investigation was conducted in the southern Appalachian Mountains, USA. We conducted complete biodiversity inventories of lichens (all growth forms, reproductive modes, substrates) across 47, 1-ha plots to test classic models of responses to disturbance (e.g., linear, unimodal). Disturbance was quantifed in each plot using a standardized suite of habitat quality variables. We additionally quantifed woody plant diversity, forest density, rock density, as well as environmental factors (elevation, temperature, precipitation, net primary productivity, slope, aspect) and analyzed their impacts on lichen biodiversity. Our analyses recovered a strong, positive, linear relationship between lichen biodiversity and habitat quality: lower levels of disturbance correlate to higher species diversity. With few exceptions, additional variables failed to signifcantly explain variation in diversity among plots for the 509 total lichen species, but we caution that total variation in some of these variables was limited in our study area. -
The Lichen Genus Physcia (Schreb.) Michx (Physciaceae: Ascomycota) in New Zealand
Tuhinga 16: 59–91 Copyright © Te Papa Museum of New Zealand (2005) The lichen genus Physcia (Schreb.) Michx (Physciaceae: Ascomycota) in New Zealand D. J. Galloway1 and R. Moberg 2 1 Landcare Research, New Zealand Ltd, Private Bag 1930, Dunedin, New Zealand ([email protected]) 2 Botany Section (Fytoteket), Museum of Evolution, Evolutionary Biology Centre, Uppsala University, Norbyvägen 16, SE-752 36 Uppsala, Sweden ABSTRACT: Fourteen species of the lichen genus Physcia (Schreb.) Michx are recognised in the New Zealand mycobiota, viz: P. adscendens, P. albata, P. atrostriata, P. caesia, P. crispa, P. dubia, P. erumpens, P. integrata, P. jackii, P. nubila, P. poncinsii, P. tribacia, P. trib- acoides, and P. undulata. Descriptions of each taxon are given, together with a key and details of biogeography, chemistry, distribution, and ecology. Physcia tenuisecta Zahlbr., is synonymised with Hyperphyscia adglutinata, and Physcia stellaris auct. is deleted from the New Zealand mycobiota. Physcia atrostriata, P. dubia, P. integrata, and P. nubila are recorded from New Zealand for the first time. A list of excluded taxa is appended. KEYWORDS: lichens, New Zealand lichens, Physcia, atmospheric pollution, biogeography. Introduction genera with c. 860 species presently known (Kirk et al. 2001), and was recently emended to include taxa having: Species of Physcia (Schreb.) Michx, are foliose, lobate, Lecanora-type asci; a hyaline hypothecium; and ascospores loosely to closely appressed lichens, with a whitish, pale with distinct wall thickenings or of Rinodella-type (Helms greenish, green-grey to dark-grey upper surface (not dark- et al. 2003). Physcia is a widespread, cosmopolitan genus ening, or colour only little changed, when moistened). -
Lichens and Allied Fungi of the Indiana Forest Alliance
2017. Proceedings of the Indiana Academy of Science 126(2):129–152 LICHENS AND ALLIED FUNGI OF THE INDIANA FOREST ALLIANCE ECOBLITZ AREA, BROWN AND MONROE COUNTIES, INDIANA INCORPORATED INTO A REVISED CHECKLIST FOR THE STATE OF INDIANA James C. Lendemer: Institute of Systematic Botany, The New York Botanical Garden, Bronx, NY 10458-5126 USA ABSTRACT. Based upon voucher collections, 108 lichen species are reported from the Indiana Forest Alliance Ecoblitz area, a 900 acre unit in Morgan-Monroe and Yellowwood State Forests, Brown and Monroe Counties, Indiana. The lichen biota of the study area was characterized as: i) dominated by species with green coccoid photobionts (80% of taxa); ii) comprised of 49% species that reproduce primarily with lichenized diaspores vs. 44% that reproduce primarily through sexual ascospores; iii) comprised of 65% crustose taxa, 29% foliose taxa, and 6% fruticose taxa; iv) one wherein many species are rare (e.g., 55% of species were collected fewer than three times) and fruticose lichens other than Cladonia were entirely absent; and v) one wherein cyanolichens were poorly represented, comprising only three species. Taxonomic diversity ranged from 21 to 56 species per site, with the lowest diversity sites concentrated in riparian corridors and the highest diversity sites on ridges. Low Gap Nature Preserve, located within the study area, was found to have comparable species richness to areas outside the nature preserve, although many species rare in the study area were found only outside preserve boundaries. Sets of rare species are delimited and discussed, as are observations as to the overall low abundance of lichens on corticolous substrates and the presence of many unhealthy foliose lichens on mature tree boles.