Lichens of Alaska's South Coast
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The Lichens' Microbiota, Still a Mystery?
fmicb-12-623839 March 24, 2021 Time: 15:25 # 1 REVIEW published: 30 March 2021 doi: 10.3389/fmicb.2021.623839 The Lichens’ Microbiota, Still a Mystery? Maria Grimm1*, Martin Grube2, Ulf Schiefelbein3, Daniela Zühlke1, Jörg Bernhardt1 and Katharina Riedel1 1 Institute of Microbiology, University Greifswald, Greifswald, Germany, 2 Institute of Plant Sciences, Karl-Franzens-University Graz, Graz, Austria, 3 Botanical Garden, University of Rostock, Rostock, Germany Lichens represent self-supporting symbioses, which occur in a wide range of terrestrial habitats and which contribute significantly to mineral cycling and energy flow at a global scale. Lichens usually grow much slower than higher plants. Nevertheless, lichens can contribute substantially to biomass production. This review focuses on the lichen symbiosis in general and especially on the model species Lobaria pulmonaria L. Hoffm., which is a large foliose lichen that occurs worldwide on tree trunks in undisturbed forests with long ecological continuity. In comparison to many other lichens, L. pulmonaria is less tolerant to desiccation and highly sensitive to air pollution. The name- giving mycobiont (belonging to the Ascomycota), provides a protective layer covering a layer of the green-algal photobiont (Dictyochloropsis reticulata) and interspersed cyanobacterial cell clusters (Nostoc spec.). Recently performed metaproteome analyses Edited by: confirm the partition of functions in lichen partnerships. The ample functional diversity Nathalie Connil, Université de Rouen, France of the mycobiont contrasts the predominant function of the photobiont in production Reviewed by: (and secretion) of energy-rich carbohydrates, and the cyanobiont’s contribution by Dirk Benndorf, nitrogen fixation. In addition, high throughput and state-of-the-art metagenomics and Otto von Guericke University community fingerprinting, metatranscriptomics, and MS-based metaproteomics identify Magdeburg, Germany Guilherme Lanzi Sassaki, the bacterial community present on L. -
Genetic Variation Within and Among Populations of the Threatened Lichen Lobaria Pulmonaria in Switzerland and Implications for I
MEC820.fm Page 2049 Saturday, December 18, 1999 1:20 PM Molecular Ecology (1999) 8, 2049–2059 GeneticBlackwell Science, Ltd variation within and among populations of the threatened lichen Lobaria pulmonaria in Switzerland and implications for its conservation S. ZOLLER,* F. LUTZONI† and C. SCHEIDEGGER* *Swiss Federal Institute for Forest, Snow and Landscape Research, CH-8903 Birmensdorf, Switzerland, †Department of Botany, The Field Museum of Natural History, Chicago IL 60605, USA Abstract The foliose epiphytic lichen Lobaria pulmonaria has suffered a significant decline in European lowlands during the last decades and therefore is considered as endangered throughout Europe. An assessment of the genetic variability is necessary to formulate biologically sound conservation recommendations for this species. We investigated the genetic diversity of the fungal symbiont of L. pulmonaria using 143 specimens sampled from six populations (two small, one medium, three large) in the lowland, the Jura Moun- tains, the pre-Alps and the Alps of Switzerland. Among all nuclear and mitochondrial regions sequenced for this study, variability was found only in the internal transcribed spacer (ITS I), with three polymorphic sites, and in the nuclear ribosomal large subunit (nrLSU), with four polymorphic sites. The variable sites in the nrLSU are all located within a putative spliceosomal intron. We sequenced these two regions for 81 specimens and detected six genotypes. Two genotypes were common, two were found only in the more diverse populations and two were found only in one population each. There was no correlation between population size and genetic diversity. The highest genetic diversity was found in populations where the fungal symbiont is reproducing sexually. -
A Study of the Pruinose Species of Hypogymnia (Parmeliaceae, Ascomycota) from China
See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/259425488 A study of the pruinose species of Hypogymnia (Parmeliaceae, Ascomycota) from China Article in The Lichenologist · November 2012 DOI: 10.1017/S0024282912000473 CITATIONS READS 3 134 2 authors, including: Xinli Wei Institute of Microbiology Chinese Academy of Sciences 65 PUBLICATIONS 355 CITATIONS SEE PROFILE Some of the authors of this publication are also working on these related projects: Lichen species composition and distribution in China View project Discovering the possibility of life on Mars View project All content following this page was uploaded by Xinli Wei on 09 June 2015. The user has requested enhancement of the downloaded file. The Lichenologist 44(6): 783–793 (2012) 6 British Lichen Society, 2012 doi:10.1017/S0024282912000473 A study of the pruinose species of Hypogymnia (Parmeliaceae, Ascomycota) from China Xin-Li WEI and Jiang-Chun WEI Abstract: Six pruinose species of Hypogymnia are reported in this paper, including one new species Hypogymnia pruinoidea. The type of Hypogymnia pseudopruinosa was found to be a mixture with H. laccata. Hypogymnia pseudopruinosa is therefore typified with a lectotype, and the description of H. pseudopruinosa is revised. Distributions of the six pruinose species are given and discussed. Com- ments on differences and similarities between pruinose species of Hypogymnia are made. Diagnostic characters of each species, and a key to the pruinose species of Hypogymnia in China, are also provided. Key words: H. pruinoidea, H. pseudopruinosa, lichen substances, pruina Accepted for publication 6 June 2012 Introduction Materials and Methods Although over 100 species of Hypogymnia Specimens treated here are preserved in the Lichen (Nyl.) Nyl. -
Lichen Communities for Forest Health Monitoring in Colorado
Lichen Communities for Forest Health Monitoring in Colorado, USA A Report to the USDA Forest Service by Bruce McCune1, Paul Rogers2, Andrea Ruchty1, and Bruce Ryan3 29 June 1998 1Department of Botany and Plant Pathology, Cordley 2082, Oregon State University, Corvallis, OR 97331-2902. Phone: 541 737 1741, fax: 541 737 3573, email: [email protected] 2USDA Forest Service, Intermountain Research Station, 507 25th St., Ogden, UT 84401 3Department of Botany, Arizona State University, Tempe, AZ 85287-1601 CONTENTS Abstract ............................................................................................................... 1 Introduction........................................................................................................... 2 Lichens in the Forest Health Monitoring Program ................................................ 2 The Lichen Community Indicator ..................................................................... 2 Previous Work on Lichen Communities in Colorado............................................. 4 Methods ............................................................................................................... 4 Field Methods .............................................................................................. 4 Data Sources ............................................................................................... 5 Data Analysis............................................................................................... 6 The Analytical Data Set....................................................................... -
The Puzzle of Lichen Symbiosis
Digital Comprehensive Summaries of Uppsala Dissertations from the Faculty of Science and Technology 1503 The puzzle of lichen symbiosis Pieces from Thamnolia IOANA ONUT, -BRÄNNSTRÖM ACTA UNIVERSITATIS UPSALIENSIS ISSN 1651-6214 ISBN 978-91-554-9887-0 UPPSALA urn:nbn:se:uu:diva-319639 2017 Dissertation presented at Uppsala University to be publicly examined in Lindhalsalen, EBC, Norbyvägen 14, Uppsala, Thursday, 1 June 2017 at 09:15 for the degree of Doctor of Philosophy. The examination will be conducted in English. Faculty examiner: Associate Professor Anne Pringle (University of Wisconsin-Madison, Department of Botany). Abstract Onuț-Brännström, I. 2017. The puzzle of lichen symbiosis. Pieces from Thamnolia. Digital Comprehensive Summaries of Uppsala Dissertations from the Faculty of Science and Technology 1503. 62 pp. Uppsala: Acta Universitatis Upsaliensis. ISBN 978-91-554-9887-0. Symbiosis brought important evolutionary novelties to life on Earth. Lichens, the symbiotic entities formed by fungi, photosynthetic organisms and bacteria, represent an example of a successful adaptation in surviving hostile environments. Yet many aspects of the lichen symbiosis remain unexplored. This thesis aims at bringing insights into lichen biology and the importance of symbiosis in adaptation. I am using as model system a successful colonizer of tundra and alpine environments, the worm lichens Thamnolia, which seem to only reproduce vegetatively through symbiotic propagules. When the genetic architecture of the mating locus of the symbiotic fungal partner was analyzed with genomic and transcriptomic data, a sexual self-incompatible life style was revealed. However, a screen of the mating types ratios across natural populations detected only one of the mating types, suggesting that Thamnolia has no potential for sexual reproduction because of lack of mating partners. -
Global Biodiversity Patterns of the Photobionts Associated with the Genus Cladonia (Lecanorales, Ascomycota)
Microbial Ecology https://doi.org/10.1007/s00248-020-01633-3 FUNGAL MICROBIOLOGY Global Biodiversity Patterns of the Photobionts Associated with the Genus Cladonia (Lecanorales, Ascomycota) Raquel Pino-Bodas1 & Soili Stenroos2 Received: 19 August 2020 /Accepted: 22 October 2020 # The Author(s) 2020 Abstract The diversity of lichen photobionts is not fully known. We studied here the diversity of the photobionts associated with Cladonia, a sub-cosmopolitan genus ecologically important, whose photobionts belong to the green algae genus Asterochloris. The genetic diversity of Asterochloris was screened by using the ITS rDNA and actin type I regions in 223 specimens and 135 species of Cladonia collected all over the world. These data, added to those available in GenBank, were compiled in a dataset of altogether 545 Asterochloris sequences occurring in 172 species of Cladonia. A high diversity of Asterochloris associated with Cladonia was found. The commonest photobiont lineages associated with this genus are A. glomerata, A. italiana,andA. mediterranea. Analyses of partitioned variation were carried out in order to elucidate the relative influence on the photobiont genetic variation of the following factors: mycobiont identity, geographic distribution, climate, and mycobiont phylogeny. The mycobiont identity and climate were found to be the main drivers for the genetic variation of Asterochloris. The geographical distribution of the different Asterochloris lineages was described. Some lineages showed a clear dominance in one or several climatic regions. In addition, the specificity and the selectivity were studied for 18 species of Cladonia. Potentially specialist and generalist species of Cladonia were identified. A correlation was found between the sexual reproduction frequency of the host and the frequency of certain Asterochloris OTUs. -
Insights Into the Ecology and Genetics of Lichens with a Cyanobacterial Photobiont
Insights into the Ecology and Genetics of Lichens with a Cyanobacterial Photobiont Katja Fedrowitz Faculty of Natural Resources and Agricultural Sciences Department of Ecology Uppsala Doctoral Thesis Swedish University of Agricultural Sciences Uppsala 2011 Acta Universitatis agriculturae Sueciae 2011:96 Cover: Lobaria pulmonaria, Nephroma bellum, and fallen bark in an old-growth forest in Finland with Populus tremula. Part of the tRNALeu (UAA) sequence in an alignment. (photos: K. Fedrowitz) ISSN 1652-6880 ISBN 978-91-576-7640-5 © 2011 Katja Fedrowitz, Uppsala Print: SLU Service/Repro, Uppsala 2011 Insights into the Ecology and Genetics of Lichens with a Cyanobacterial Photobiont Abstract Nature conservation requires an in-depth understanding of the ecological processes that influence species persistence in the different phases of a species life. In lichens, these phases comprise dispersal, establishment, and growth. This thesis aimed at increasing the knowledge on epiphytic cyanolichens by studying different aspects linked to these life stages, including species colonization extinction dynamics, survival and vitality of lichen transplants, and the genetic symbiont diversity in the genus Nephroma. Paper I reveals that local colonizations, stochastic, and deterministic extinctions occur in several epiphytic macrolichens. Species habitat-tracking metapopulation dynamics could partly be explained by habitat quality and size, spatial connectivity, and possibly facilitation by photobiont sharing. Simulations of species future persistence suggest stand-level extinction risk for some infrequent sexually dispersed species, especially when assuming low tree numbers and observed tree fall rates. Forestry practices influence the natural occurrence of species, and retention of trees at logging is one measure to maintain biodiversity. However, their long-term benefit for biodiversity is still discussed. -
Monitoring Air Quality in Class I Wilderness Areas of the Northeastern United States Using Lichens and Bryophytes Alison C
United States Department of Agriculture Monitoring Air Quality in Class I Wilderness Areas of the Northeastern United States Using Lichens and Bryophytes Alison C. Dibble, James W. Hinds, Ralph Perron, Natalie Cleavitt, Richard L. Poirot, and Linda H. Pardo Forest Service Northern Research Station General Technical Report NRS-165 December 2016 1 Abstract To address a need for air quality and lichen monitoring information for the Northeast, we compared bulk chemistry data from 2011-2013 to baseline surveys from 1988 and 1993 in three Class I Wilderness areas of New Hampshire and Vermont. Plots were within the White Mountain National Forest (Presidential Range—Dry River Wilderness and Great Gulf Wilderness, New Hampshire) and the Green Mountain National Forest (Lye Brook Wilderness, Vermont). We sampled epiphyte communities and found 58 macrolichen species and 55 bryophyte species. We also analyzed bulk samples for total N, total S, and 27 additional elements. We detected a decrease in Pb at the level of the National Forest and in a subset of plots. Low lichen richness and poor thallus condition at Lye Brook corresponded to higher N and S levels at these sites. Lichen thallus condition was best where lichen species richness was also high. Highest Hg content, from a limited subset, was on the east slope of Mt. Washington near the head of Great Gulf. Most dominant lichens in good condition were associated with conifer boles or acidic substrates. The status regarding N and S tolerance for many lichens in the northeastern United States is not clear, so the influence of N pollution on community data cannot be fully assessed. -
Distribution and Habitat Ecology of the Threatened Forest Lichen Lobaria Pulmonaria in Estonia
Folia Cryptog. Estonica, Fasc. 46: 55–65 (2009) Distribution and habitat ecology of the threatened forest lichen Lobaria pulmonaria in Estonia Inga Jüriado & Jaan Liira Department of Botany, Institute of Ecology and Earth Sciences, University of Tartu, Estonia, 40 Lai st., Tartu 51005, Estonia. E-mail: [email protected] Abstract: Lobaria pulmonaria is a widely used as an indicator species of undisturbed old-growth forests ecosystems, but the knowledge about its habitat ecology is still highly fragmented. To quantify the distribution, habitat preference and host tree specificity ofLobaria pulmonaria we utilised data from databases and field surveys in Estonia. The number ofL. pulmonaria localities is the highest in the densely forested regions, concentrated mainly in small forest patches defined as ‘ecologically highly valuable’. The species grows mostly on deciduous trees, particularly on aspen Populus( tremula). L. pulmonaria is most common in oligo-mesotrophic boreal, eutrophic boreo-nemoral and in eutrophic paludifying forests, and prefers forests with an average age of trees more than 100 years. In addition, we found that younger stands could be suitable habitats for L. pulmonaria if the structure of the stand is comparable to mature stands. In spite of the many localities of L. pulmonaria in Estonia, the species is still threatened because (1) the rotation period of tree stands is short, (2) it is abundant in forest types which are rare or under strong economic pressure, (3) and it prefers host trees which have a restricted distribution in Estonia or are not favoured in forest management practice. Kokkuvõte: Hariliku kopsusambliku (Lobaria pulmonaria), ohustatud metsasambliku levik ja kasvukohanõudlus Eestis. -
Assessment of Lichens As Biomonitors of Heavy Metal Pollution in Selected Mining Area, Slovakia Amer H
ISSN-1996-918X Cross Mark Pak. J. Anal. Environ. Chem. Vol. 22, No. 1 (2021) 53 – 59 http://doi.org/10.21743/pjaec/2021.06.07 Assessment of Lichens as Biomonitors of Heavy Metal Pollution in Selected Mining Area, Slovakia Amer H. Tarawneh1, Ivan Salamon2*, Rakan M. Altarawneh3, Jozef Mitra1 and Anastassiya Gadetskaya4 1Tafila Technical University, Department of Chemistry and Chemical Technology, P.O.Box 179, Tafila 66110, Jordan. 2University of Presov, Faculty of Humanities and Natural Science, Department of Ecology, 01, 17th November St., 081 16, Presov, Slovakia. 3Chemistry Department, Faculty of Science, Mutah University, Karak 61710, Jordan. 4School of Chemistry and Chemical Technology, Al-Farabi Kazakh National University, Almaty 050040, Kazakhstan. *Corresponding Author Email: [email protected] Received 07 September 2020, Revised 23 April 2021, Accepted 26 April 2021 -------------------------------------------------------------------------------------------------------------------------------------------- Abstract Lichens have widely been used as bioindicators to reflect the quality of the environment. The present study was conducted to investigate the lichens diversity that grows on the surface of waste heaps from an abandoned old copper mine in Mlynky, Slovakia. In spite of the heavy metal- contaminated environment, we documented twenty species of lichens in the selected site. Taxonomically the most numerous group were represented by Cladonia with seven species, as well other species; namely, Acarospora fuscata, Cetraria islandica, Dermatocarpon miniatum, Hypogymnia physodes, Hypogymnia tubulosa, Lecanora subaurea, Lepraria incana, Physcia aipolia, Porpidia macrocarpa, Pseudevernia furfuracea, Rhizocarpon geographicum and Xanthoria parietina. The content of selected heavy metals (Cu, Fe, and Zn) in the predominant lichens Cetraria islandica, Cladonia digitata, Cladonia pyxidata, Hypogymnia physodes and Pseudevernia furfuracea were analyzed. -
1307 Fungi Representing 1139 Infrageneric Taxa, 317 Genera and 66 Families ⇑ Jolanta Miadlikowska A, , Frank Kauff B,1, Filip Högnabba C, Jeffrey C
Molecular Phylogenetics and Evolution 79 (2014) 132–168 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families ⇑ Jolanta Miadlikowska a, , Frank Kauff b,1, Filip Högnabba c, Jeffrey C. Oliver d,2, Katalin Molnár a,3, Emily Fraker a,4, Ester Gaya a,5, Josef Hafellner e, Valérie Hofstetter a,6, Cécile Gueidan a,7, Mónica A.G. Otálora a,8, Brendan Hodkinson a,9, Martin Kukwa f, Robert Lücking g, Curtis Björk h, Harrie J.M. Sipman i, Ana Rosa Burgaz j, Arne Thell k, Alfredo Passo l, Leena Myllys c, Trevor Goward h, Samantha Fernández-Brime m, Geir Hestmark n, James Lendemer o, H. Thorsten Lumbsch g, Michaela Schmull p, Conrad L. Schoch q, Emmanuël Sérusiaux r, David R. Maddison s, A. Elizabeth Arnold t, François Lutzoni a,10, Soili Stenroos c,10 a Department of Biology, Duke University, Durham, NC 27708-0338, USA b FB Biologie, Molecular Phylogenetics, 13/276, TU Kaiserslautern, Postfach 3049, 67653 Kaiserslautern, Germany c Botanical Museum, Finnish Museum of Natural History, FI-00014 University of Helsinki, Finland d Department of Ecology and Evolutionary Biology, Yale University, 358 ESC, 21 Sachem Street, New Haven, CT 06511, USA e Institut für Botanik, Karl-Franzens-Universität, Holteigasse 6, A-8010 Graz, Austria f Department of Plant Taxonomy and Nature Conservation, University of Gdan´sk, ul. Wita Stwosza 59, 80-308 Gdan´sk, Poland g Science and Education, The Field Museum, 1400 S. -
An Evolving Phylogenetically Based Taxonomy of Lichens and Allied Fungi
Opuscula Philolichenum, 11: 4-10. 2012. *pdf available online 3January2012 via (http://sweetgum.nybg.org/philolichenum/) An evolving phylogenetically based taxonomy of lichens and allied fungi 1 BRENDAN P. HODKINSON ABSTRACT. – A taxonomic scheme for lichens and allied fungi that synthesizes scientific knowledge from a variety of sources is presented. The system put forth here is intended both (1) to provide a skeletal outline of the lichens and allied fungi that can be used as a provisional filing and databasing scheme by lichen herbarium/data managers and (2) to announce the online presence of an official taxonomy that will define the scope of the newly formed International Committee for the Nomenclature of Lichens and Allied Fungi (ICNLAF). The online version of the taxonomy presented here will continue to evolve along with our understanding of the organisms. Additionally, the subfamily Fissurinoideae Rivas Plata, Lücking and Lumbsch is elevated to the rank of family as Fissurinaceae. KEYWORDS. – higher-level taxonomy, lichen-forming fungi, lichenized fungi, phylogeny INTRODUCTION Traditionally, lichen herbaria have been arranged alphabetically, a scheme that stands in stark contrast to the phylogenetic scheme used by nearly all vascular plant herbaria. The justification typically given for this practice is that lichen taxonomy is too unstable to establish a reasonable system of classification. However, recent leaps forward in our understanding of the higher-level classification of fungi, driven primarily by the NSF-funded Assembling the Fungal Tree of Life (AFToL) project (Lutzoni et al. 2004), have caused the taxonomy of lichen-forming and allied fungi to increase significantly in stability. This is especially true within the class Lecanoromycetes, the main group of lichen-forming fungi (Miadlikowska et al.