Fossil Usnea and Similar Fruticose Lichens from Palaeogene Amber
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One Hundred New Species of Lichenized Fungi: a Signature of Undiscovered Global Diversity
Phytotaxa 18: 1–127 (2011) ISSN 1179-3155 (print edition) www.mapress.com/phytotaxa/ Monograph PHYTOTAXA Copyright © 2011 Magnolia Press ISSN 1179-3163 (online edition) PHYTOTAXA 18 One hundred new species of lichenized fungi: a signature of undiscovered global diversity H. THORSTEN LUMBSCH1*, TEUVO AHTI2, SUSANNE ALTERMANN3, GUILLERMO AMO DE PAZ4, ANDRÉ APTROOT5, ULF ARUP6, ALEJANDRINA BÁRCENAS PEÑA7, PAULINA A. BAWINGAN8, MICHEL N. BENATTI9, LUISA BETANCOURT10, CURTIS R. BJÖRK11, KANSRI BOONPRAGOB12, MAARTEN BRAND13, FRANK BUNGARTZ14, MARCELA E. S. CÁCERES15, MEHTMET CANDAN16, JOSÉ LUIS CHAVES17, PHILIPPE CLERC18, RALPH COMMON19, BRIAN J. COPPINS20, ANA CRESPO4, MANUELA DAL-FORNO21, PRADEEP K. DIVAKAR4, MELIZAR V. DUYA22, JOHN A. ELIX23, ARVE ELVEBAKK24, JOHNATHON D. FANKHAUSER25, EDIT FARKAS26, LIDIA ITATÍ FERRARO27, EBERHARD FISCHER28, DAVID J. GALLOWAY29, ESTER GAYA30, MIREIA GIRALT31, TREVOR GOWARD32, MARTIN GRUBE33, JOSEF HAFELLNER33, JESÚS E. HERNÁNDEZ M.34, MARÍA DE LOS ANGELES HERRERA CAMPOS7, KLAUS KALB35, INGVAR KÄRNEFELT6, GINTARAS KANTVILAS36, DOROTHEE KILLMANN28, PAUL KIRIKA37, KERRY KNUDSEN38, HARALD KOMPOSCH39, SERGEY KONDRATYUK40, JAMES D. LAWREY21, ARMIN MANGOLD41, MARCELO P. MARCELLI9, BRUCE MCCUNE42, MARIA INES MESSUTI43, ANDREA MICHLIG27, RICARDO MIRANDA GONZÁLEZ7, BIBIANA MONCADA10, ALIFERETI NAIKATINI44, MATTHEW P. NELSEN1, 45, DAG O. ØVSTEDAL46, ZDENEK PALICE47, KHWANRUAN PAPONG48, SITTIPORN PARNMEN12, SERGIO PÉREZ-ORTEGA4, CHRISTIAN PRINTZEN49, VÍCTOR J. RICO4, EIMY RIVAS PLATA1, 50, JAVIER ROBAYO51, DANIA ROSABAL52, ULRIKE RUPRECHT53, NORIS SALAZAR ALLEN54, LEOPOLDO SANCHO4, LUCIANA SANTOS DE JESUS15, TAMIRES SANTOS VIEIRA15, MATTHIAS SCHULTZ55, MARK R. D. SEAWARD56, EMMANUËL SÉRUSIAUX57, IMKE SCHMITT58, HARRIE J. M. SIPMAN59, MOHAMMAD SOHRABI 2, 60, ULRIK SØCHTING61, MAJBRIT ZEUTHEN SØGAARD61, LAURENS B. SPARRIUS62, ADRIANO SPIELMANN63, TOBY SPRIBILLE33, JUTARAT SUTJARITTURAKAN64, ACHRA THAMMATHAWORN65, ARNE THELL6, GÖRAN THOR66, HOLGER THÜS67, EINAR TIMDAL68, CAMILLE TRUONG18, ROMAN TÜRK69, LOENGRIN UMAÑA TENORIO17, DALIP K. -
Mycobiology Research Article
Mycobiology Research Article Lichen Mycota in South Korea: The Genus Usnea 1 1 1 1 2 1, Udeni Jayalal , Santosh Joshi , Soon-Ok Oh , Young Jin Koh , Florin Criçs an and Jae-Seoun Hur * 1 Korean Lichen Research Institute, Sunchon National University, Suncheon 540-742, Korea 2 Faculty of Biology and Geology, Babeçs -Bolyai University, Cluj-Napoca, 400015, Romania Abstract Usnea Adans. is a somewhat rare lichen in South Korea, and, in nearly two decades, no detailed taxonomic or revisionary study has been conducted. This study was based on the specimens deposited in the lichen herbarium at the Korean Lichen Research Institute, and the samples were identified using information obtained from recent literature. In this study, a total of eight species of Usnea, including one new record, Usnea hakonensis Asahina, are documented. Detailed descriptions of each species with their morphological, anatomical, and chemical characteristics are provided. A key to all known Usnea species in South Korea is also presented. Keywords Key, New record, Parmeliaceae, South Korea, Usnea The lichen genus Usnea Adans. belongs to the family [6] proposed another subgenus Dolichousnea (Y. Ohmura) Parmeliaceae [1] (Lecanorales, Ascomycota), with ca. 300 Articus from the subgenus Usnea. The subgenus Eumitria species, and shows a world-wide distribution [2, 3]. Due to (Stirt.) Zahlbr. and sections Usnea Dill. ex Adans. and a fruticose habit and a beard like appearance, it is easily Ceratinae (Motyka) Y. Ohmura were segregated from the recognized, but difficult to identify up to species level due subgenus Usnea based on the molecular analysis reported to the presence of varying characteristics [4, 5]. -
A Review of Lichenology in Saint Lucia Including a Lichen Checklist
A REVIEW OF LICHENOLOGY IN SAINT LUCIA INCLUDING A LICHEN CHECKLIST HOWARD F. FOX1 AND MARIA L. CULLEN2 Abstract. The lichenological history of Saint Lucia is reviewed from published literature and catalogues of herbarium specimens. 238 lichens and 2 lichenicolous fungi are reported. Of these 145 species are known only from single localities in Saint Lucia. Important her- barium collections were made by Alexander Evans, Henry and Frederick Imshaug, Dag Øvstedal, Emmanuël Sérusiaux and the authors. Soufrière is the most surveyed botanical district for lichens. Keywords. Lichenology, Caribbean islands, tropical forest lichens, history of botany, Saint Lucia Saint Lucia is located at 14˚N and 61˚W in the Lesser had related that there were 693 collections by Imshaug from Antillean archipelago, which stretches from Anguilla in the Saint Lucia and that these specimens were catalogued online north to Grenada and Barbados in the south. The Caribbean (Johnson et al. 2005). An excursion was made by the authors Sea lies to the west and the Atlantic Ocean is to the east. The in April and May 2007 to collect and study lichens in Saint island has a land area of 616 km² (238 square miles). Lucia. The unpublished Imshaug field notebook referring to This paper presents a comprehensive checklist of lichens in the Saint Lucia expedition of 1963 was transcribed on a visit Saint Lucia, using new records, unpublished data, herbarium to MSC in September 2007. Loans of herbarium specimens specimens, online resources and published records. When were obtained for study from BG, MICH and MSC. These our study began in March 2007, Feuerer (2005) indicated 2 voucher specimens collected by Evans, Imshaug, Øvstedal species from Saint Lucia and Imshaug (1957) had reported 3 and the authors were examined with a stereoscope and a species. -
A Multigene Phylogenetic Synthesis for the Class Lecanoromycetes (Ascomycota): 1307 Fungi Representing 1139 Infrageneric Taxa, 317 Genera and 66 Families
A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families Miadlikowska, J., Kauff, F., Högnabba, F., Oliver, J. C., Molnár, K., Fraker, E., ... & Stenroos, S. (2014). A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families. Molecular Phylogenetics and Evolution, 79, 132-168. doi:10.1016/j.ympev.2014.04.003 10.1016/j.ympev.2014.04.003 Elsevier Version of Record http://cdss.library.oregonstate.edu/sa-termsofuse Molecular Phylogenetics and Evolution 79 (2014) 132–168 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families ⇑ Jolanta Miadlikowska a, , Frank Kauff b,1, Filip Högnabba c, Jeffrey C. Oliver d,2, Katalin Molnár a,3, Emily Fraker a,4, Ester Gaya a,5, Josef Hafellner e, Valérie Hofstetter a,6, Cécile Gueidan a,7, Mónica A.G. Otálora a,8, Brendan Hodkinson a,9, Martin Kukwa f, Robert Lücking g, Curtis Björk h, Harrie J.M. Sipman i, Ana Rosa Burgaz j, Arne Thell k, Alfredo Passo l, Leena Myllys c, Trevor Goward h, Samantha Fernández-Brime m, Geir Hestmark n, James Lendemer o, H. Thorsten Lumbsch g, Michaela Schmull p, Conrad L. Schoch q, Emmanuël Sérusiaux r, David R. Maddison s, A. Elizabeth Arnold t, François Lutzoni a,10, -
Alectorioid Morphologies in Paleogene Lichens: New Evidence and Re-Evaluation of the Fossil Alectoria Succini Mägdefrau
RESEARCH ARTICLE Alectorioid Morphologies in Paleogene Lichens: New Evidence and Re-Evaluation of the Fossil Alectoria succini Mägdefrau Ulla Kaasalainen1*, Jochen Heinrichs2, Michael Krings3, Leena Myllys4, Heinrich Grabenhorst5, Jouko Rikkinen6, Alexander R. Schmidt1 1 Department of Geobiology, University of Göttingen, Göttingen, Germany, 2 Department of Biology and Geobio-Center, University of Munich (LMU), Munich, Germany, 3 Department of Earth and Environmental Sciences, University of Munich (LMU), and Bavarian State Collection for Palaeontology and Geology, Munich, Germany, 4 Finnish Museum of Natural History, University of Helsinki, Helsinki, Finland, 5 c/o Amber Study Group, Geological-Palaeontological Institute and Museum, University of Hamburg, Hamburg, Germany, 6 Department of Biosciences, University of Helsinki, Helsinki, Finland * [email protected] OPEN ACCESS Abstract Citation: Kaasalainen U, Heinrichs J, Krings M, One of the most important issues in molecular dating studies concerns the incorporation of Myllys L, Grabenhorst H, Rikkinen J, et al. (2015) Alectorioid Morphologies in Paleogene Lichens: New reliable fossil taxa into the phylogenies reconstructed from DNA sequence variation in ex- Evidence and Re-Evaluation of the Fossil Alectoria tant taxa. Lichens are symbiotic associations between fungi and algae and/or cyanobacte- succini Mägdefrau. PLoS ONE 10(6): e0129526. ria. Several lichen fossils have been used as minimum age constraints in recent studies doi:10.1371/journal.pone.0129526 concerning the diversification of the Ascomycota. Recent evolutionary studies of Lecanoro- Academic Editor: Peter Wilf, Penn State University, mycetes, an almost exclusively lichen-forming class in the Ascomycota, have utilized the UNITED STATES Eocene amber inclusion Alectoria succinic as a minimum age constraint. -
From Genbank to GBIF: Phylogeny-Based Predictive Niche Modeling Tests Accuracy of Taxonomic Identifications in Large Occurrence Data Repositories
RESEARCH ARTICLE From GenBank to GBIF: Phylogeny-Based Predictive Niche Modeling Tests Accuracy of Taxonomic Identifications in Large Occurrence Data Repositories B. Eugene Smith1, Mark K. Johnston2, Robert Lücking1,3* 1 Integrative Research Center & Gantz Family Collections Center, Science & Education, The Field Museum, 1400 South Lake Shore Drive, Chicago, Illinois, 60605–2496, United States of America, 2 Science Action Center, Science & Education, The Field Museum, 1400 South Lake Shore Drive, Chicago, Illinois, 60605– 2496, United States of America, 3 Botanical Garden and Botanical Museum, Königin-Luise-Str. 6–8, 14195, Berlin, Germany * [email protected]; [email protected] OPEN ACCESS Abstract Citation: Smith BE, Johnston MK, Lücking R (2016) From GenBank to GBIF: Phylogeny-Based Predictive Accuracy of taxonomic identifications is crucial to data quality in online repositories of species Niche Modeling Tests Accuracy of Taxonomic occurrence data, such as the Global Biodiversity Information Facility (GBIF), which have accu- Identifications in Large Occurrence Data mulated several hundred million records over the past 15 years. These data serve as basis for Repositories. PLoS ONE 11(3): e0151232. doi:10.1371/journal.pone.0151232 large scale analyses of macroecological and biogeographic patterns and to document environ- mental changes over time. However, taxonomic identifications are often unreliable, especially Editor: Stefan Lötters, Trier University, GERMANY for non-vascular plants and fungi including lichens, which may lack critical revisions of voucher Received: April 12, 2015 specimens. Due to the scale of the problem, restudy of millions of collections is unrealistic and Accepted: February 25, 2016 other strategies are needed. Here we propose to use verified, georeferenced occurrence data Published: March 11, 2016 of a given species to apply predictive niche modeling that can then be used to evaluate unveri- fied occurrences of that species. -
0L the Requirements for the Degree • U 33
A Monograph of Usnea from Sao Tome and Principe A thesis submitted to the faculty of % San Francisco State University MS In partial fulfillment of E><0L the requirements for the Degree • U 33 Master of Science In Biology: Ecology and Systematic Biology by Miko Rain Abraham Nadel San Francisco, California December 2015 Copyright by Miko Rain Abraham Nadel 2015 CERTIFICATION OF APPROVAL I certify that I have read Monograph of Usnea from Sao Tome and Principe by Miko Rain Abraham Nadel, and that in my opinion this work meets the criteria for approving a thesis submitted in partial fulfillment of the requirement for the degree Master of Science in Biology: Ecology and Systematic Biology at San Francisco State University. DennisE. DesL6rdin, Ph.D. Professor ofjsiology San Francisco State University Jose R. de la Torre, Ph.D. Associate Professor of Biology San Francisco State University Robert C. Drewes, Ph.D. Curator of Herpetology, Emeritus California Academy of Sciences A Monograph of Usnea from Sao Tome and Principe Miko Rain Abraham Nadel San Francisco, California 2015 A systematic monograph of the lichen genus Usnea from the remote, under-explored islands of Sao Tome and Principe (ST&P) in tropical West Africa is presented, treating 11 species representing 2 subgenera, Usnea and Eumitria. Ten of the 11 species are reported as new for ST&P, including U. firmula, U. baileyi, U. pectinata, U. aff. flammea, U. sanguinea, U. picta, U. krogiana and three undetermined, potentially new species, Usnea species A, B and C. Usnea articulata is confirmed for the main island of Sao Tome. -
Piedmont Lichen Inventory
PIEDMONT LICHEN INVENTORY: BUILDING A LICHEN BIODIVERSITY BASELINE FOR THE PIEDMONT ECOREGION OF NORTH CAROLINA, USA By Gary B. Perlmutter B.S. Zoology, Humboldt State University, Arcata, CA 1991 A Thesis Submitted to the Staff of The North Carolina Botanical Garden University of North Carolina at Chapel Hill Advisor: Dr. Johnny Randall As Partial Fulfilment of the Requirements For the Certificate in Native Plant Studies 15 May 2009 Perlmutter – Piedmont Lichen Inventory Page 2 This Final Project, whose results are reported herein with sections also published in the scientific literature, is dedicated to Daniel G. Perlmutter, who urged that I return to academia. And to Theresa, Nichole and Dakota, for putting up with my passion in lichenology, which brought them from southern California to the Traingle of North Carolina. TABLE OF CONTENTS Introduction……………………………………………………………………………………….4 Chapter I: The North Carolina Lichen Checklist…………………………………………………7 Chapter II: Herbarium Surveys and Initiation of a New Lichen Collection in the University of North Carolina Herbarium (NCU)………………………………………………………..9 Chapter III: Preparatory Field Surveys I: Battle Park and Rock Cliff Farm……………………13 Chapter IV: Preparatory Field Surveys II: State Park Forays…………………………………..17 Chapter V: Lichen Biota of Mason Farm Biological Reserve………………………………….19 Chapter VI: Additional Piedmont Lichen Surveys: Uwharrie Mountains…………………...…22 Chapter VII: A Revised Lichen Inventory of North Carolina Piedmont …..…………………...23 Acknowledgements……………………………………………………………………………..72 Appendices………………………………………………………………………………….…..73 Perlmutter – Piedmont Lichen Inventory Page 4 INTRODUCTION Lichens are composite organisms, consisting of a fungus (the mycobiont) and a photosynthesising alga and/or cyanobacterium (the photobiont), which together make a life form that is distinct from either partner in isolation (Brodo et al. -
Myconet Volume 14 Part One. Outine of Ascomycota – 2009 Part Two
(topsheet) Myconet Volume 14 Part One. Outine of Ascomycota – 2009 Part Two. Notes on ascomycete systematics. Nos. 4751 – 5113. Fieldiana, Botany H. Thorsten Lumbsch Dept. of Botany Field Museum 1400 S. Lake Shore Dr. Chicago, IL 60605 (312) 665-7881 fax: 312-665-7158 e-mail: [email protected] Sabine M. Huhndorf Dept. of Botany Field Museum 1400 S. Lake Shore Dr. Chicago, IL 60605 (312) 665-7855 fax: 312-665-7158 e-mail: [email protected] 1 (cover page) FIELDIANA Botany NEW SERIES NO 00 Myconet Volume 14 Part One. Outine of Ascomycota – 2009 Part Two. Notes on ascomycete systematics. Nos. 4751 – 5113 H. Thorsten Lumbsch Sabine M. Huhndorf [Date] Publication 0000 PUBLISHED BY THE FIELD MUSEUM OF NATURAL HISTORY 2 Table of Contents Abstract Part One. Outline of Ascomycota - 2009 Introduction Literature Cited Index to Ascomycota Subphylum Taphrinomycotina Class Neolectomycetes Class Pneumocystidomycetes Class Schizosaccharomycetes Class Taphrinomycetes Subphylum Saccharomycotina Class Saccharomycetes Subphylum Pezizomycotina Class Arthoniomycetes Class Dothideomycetes Subclass Dothideomycetidae Subclass Pleosporomycetidae Dothideomycetes incertae sedis: orders, families, genera Class Eurotiomycetes Subclass Chaetothyriomycetidae Subclass Eurotiomycetidae Subclass Mycocaliciomycetidae Class Geoglossomycetes Class Laboulbeniomycetes Class Lecanoromycetes Subclass Acarosporomycetidae Subclass Lecanoromycetidae Subclass Ostropomycetidae 3 Lecanoromycetes incertae sedis: orders, genera Class Leotiomycetes Leotiomycetes incertae sedis: families, genera Class Lichinomycetes Class Orbiliomycetes Class Pezizomycetes Class Sordariomycetes Subclass Hypocreomycetidae Subclass Sordariomycetidae Subclass Xylariomycetidae Sordariomycetes incertae sedis: orders, families, genera Pezizomycotina incertae sedis: orders, families Part Two. Notes on ascomycete systematics. Nos. 4751 – 5113 Introduction Literature Cited 4 Abstract Part One presents the current classification that includes all accepted genera and higher taxa above the generic level in the phylum Ascomycota. -
Geography, Not Host Identity, Shapes Bacterial Community in Reindeer Lichens
bioRxiv preprint doi: https://doi.org/10.1101/2021.01.30.428927; this version posted January 31, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 Geography, not host identity, shapes bacterial community in reindeer lichens 2 Marta Alonso-García1,2, * and Juan Carlos Villarreal A.1,2,3 3 1 Département de Biologie, Université Laval, Québec, G1V 0A6, Canada. 4 2 Institut de Biologie Intégrative et des Systèmes (IBIS), Université Laval, Québec, G1V 5 0A6, Canada. 6 3 Royal Botanic Garden, 20A Inverleith Row, Edinburgh EH3 5LR. 7 * For correspondence. E-mail [email protected] 8 Factors driving bacteria in the boreal forest 9 1 bioRxiv preprint doi: https://doi.org/10.1101/2021.01.30.428927; this version posted January 31, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 Background and Aims Tremendous progress have been recently achieved in host- 2 microbe research, however, there is still a surprising lack of knowledge in many taxa. 3 Despite its dominance and crucial role in boreal forest, reindeer lichens have until now 4 received little attention. We characterize, for the first time, the bacterial community of 5 four species of reindeer lichens from Eastern North America’s boreal forests. We 6 analysed the effect of two factors (host-identity and geography) in the bacterial 7 community composition, we verified the presence of a common core bacteriota and 8 identified the most abundant core taxa. -
Fossil Usnea and Similar Fruticose Lichens from Palaeogene Amber
The Lichenologist (2020), 52, 319–324 doi:10.1017/S0024282920000286 Standard Paper Fossil Usnea and similar fruticose lichens from Palaeogene amber Ulla Kaasalainen1 , Jouko Rikkinen2,3 and Alexander R. Schmidt1 1Department of Geobiology, University of Göttingen, Göttingen, Germany; 2Finnish Museum of Natural History, University of Helsinki, Helsinki, Finland and 3Organismal and Evolutionary Biology Research Programme, Faculty of Biological and Environmental Sciences, University of Helsinki, Helsinki, Finland Abstract Fruticose lichens of the genus Usnea Dill. ex Adans. (Parmeliaceae), generally known as beard lichens, are among the most iconic epiphytic lichens in modern forest ecosystems. Many of the c. 350 currently recognized species are widely distributed and have been used as bioin- dicators in air pollution studies. Here we demonstrate that usneoid lichens were present in the Palaeogene amber forests of Europe. Based on general morphology and annular cortical fragmentation, one fossil from Baltic amber can be assigned to the extant genus Usnea. The unique type of cortical cracking indirectly demonstrates the presence of a central cord that keeps the branch intact even when its cortex is split into vertebrae-like segments. This evolutionary innovation has remained unchanged since the Palaeogene, contributing to the considerable ecological flexibility that allows Usnea species to flourish in a wide variety of ecosystems and climate regimes. The fossil sets the minimum age for Usnea to 34 million years (late Eocene). While the other similar fossils from Baltic and Bitterfeld ambers cannot be definitely assigned to the same genus, they underline the diversity of pendant lichens in Palaeogene amber forests. Key words: Ascomycota, Baltic amber, Bitterfeld amber, lichen fossils (Accepted 16 April 2020) Introduction et al. -
Publicación Anticipada Early View
ECOLOGIA https://doi.org/10.15446/caldasia.v44n1.86522 http://www.revistas.unal.edu.co/index.php/cal Caldasia 44(1):xx-xx. Enero-abril 2022 CALDASIA ISSN En línea: 2357-3759 ISSN Impreso: 0366-5232 Publicación anticipada Este trabajo ha sido aceptado para publicación en Caldasia al haber completado el proceso de evaluación por pares y su respectiva corrección, pero no se ha preparado para diagramación ni corrección de estilo. Por tanto, se pueden encontrar diferencias entre esta versión y la publicación final. Esta versión está disponible al público, pero recomendamos fuertemente que se haga referencia al pdf final para propósitos de citación. Early view This paper has been accepted for publication in Caldasia after completed the peer review process but has not been through the layout and proofreading processes. Thus, differences between this version and the final file may be found. This version is available for the public, but we strongly encourage use the final pdf for approved citation. Líquenes epífitos de los tepuyes de la cuenca alta del río Nangaritza, cordillera del Cóndor (Ecuador) Epiphytic lichens in the tepuyes of the Nangaritza valley, in Condor range (Ecuador) NOELIA FERNÁNDEZ-PRADO 1*, MARÍA PRIETO 1, ISABEL MARTÍNEZ 1, GREGORIO ARAGÓN 1 1Área de Biodiversidad y Conservación, Universidad Rey Juan Carlos, Calle Tulipán, s/n, 28933 Móstoles, Madrid (España). [email protected], [email protected], [email protected], [email protected]. *Autor para correspondencia Citación: Fernández-Prado N, Prieto M, Martínez I, Aragón G. 2022. Líquenes epífitos de los tepuyes de la cuenca alta del río Nangaritza, cordillera del Cóndor (Ecuador).