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Catálogo De Las Algas Y Cianoprocariotas Dulciacuícolas De Cuba
CATÁLOGO DE LAS ALGAS Y CIANOPROCARIOTAS DULCIACUÍCOLAS DE CUBA. EDITORIAL Augusto Comas González UNIVERSO o S U R CATÁLOGO DE LAS ALGAS Y CIANOPROCARIOTAS DULCIACUÍCOLAS DE CUBA. 1 2 CATÁLOGO DE LAS ALGAS Y CIANOPROCARIOTAS DULCIACUÍCOLAS DE CUBA. Augusto Comas González 3 Dirección Editorial: MSc. Alberto Valdés Guada Diseño: D.I. Roberto C. Berroa Cabrera Autor: Augusto Comas González Compilación y edición científica: Augusto Comas González © Reservados todos los derechos por lo que no se permite la reproduc- ción total o parcial de este libro. Editorial UNIVERSO SUR Universidad de Cienfuegos Carretera a Rodas, Km. 4. Cuatro Caminos Cienfuegos, CUBA © ISBN: 978-959-257-228-7 4 Indice INTRODUCCIÓN 7 CYANOPROKARYOTA 9 Clase Cyanophyceae 9 Orden Chroococcales Wettstein 1923 9 Orden Oscillatoriales Elenkin 1934 15 Orden Nostocales (Borzi) Geitler 1925 19 Orden Stigonematales Geitler 1925 22 Clase Chrysophyceae 23 Orden Chromulinales 23 Orden Ochromonadales 23 Orden Prymnesiales 24 Clase Xanthophyceae (= Tribophyceae) 24 Orden Mischococcales Pascher 1913 24 Orden Tribonematales Pascher 1939 25 Orden Botrydiales 26 Orden Vaucheriales 26 Clase Dinophyceae 26 Orden Peridiniales 26 Clase Cryptophyceae 27 Orden Cryptomonadales 27 Clase Rhodophyceae Ruprecht 1851 28 Orden Porphyridiales Kylin 1937 28 Orden Compsopogonales Skuja 1939 28 Orden Nemalionales Schmitz 1892 28 Orden Hildenbrandiales Pueschel & Cole 1982) 29 Orden Ceramiales 29 Clase Glaucocystophyceae Kies et Kremer 1989 29 Clase Euglenophyceae 29 Orden Euglenales 29 Clase Bacillariophyceae 34 Orden Centrales 34 Orden Pennales 35 Clase Prasinophyceae Chadefaud 1950 50 Orden Polyblepharidales Korš. 1938 50 Orden Tetraselmidales Ettl 1983 51 Clase Chlamydophyceae Ettl 1981 51 Orden Chlamydomonadales Frtisch in G.S. West 1927 51 5 Orden Volvocales Oltmanns 1904 52 Orden Chlorococcales Marchand 1895 Orth. -
Novosti Sistematiki Nizshikh Rastenii 54(2): 299–311
Новости систематики низших растений — Novosti sistematiki nizshikh rastenii 54(2): 299–311. 2020 ALGAE — ВОДОРОСЛИ Problems of species and the features of geographical distribution in colonial volvocine algae (Chlorophyta) A. G. Desnitskiy St. Petersburg State University, St. Petersburg, Russia [email protected]; [email protected] Abstract. More than ten new species of colonial volvocine algae were described in world lite rature during recent years. In present review, the published data on taxonomy, geographical distri bution and the species problem in this group of algae, mainly from the genera Gonium, Pandorina, Eudorina, and Volvox, are critically discussed. There are both cosmopolitan volvocalean species and species with local or disjunct distribution. On the other hand, the description of new cryptic taxa in some genera of the colonial family Volvocaceae, such as Pandorina and Volvox, complicates the preparation of a comprehensive review on their geography. Keywords: Gonium, Pandorina, Volvox, cryptic taxa, reproductive isolation, volvocalean geography. Проблемы вида и особенностей географического распространения у колониальных вольвоксовых водорослей (Chlorophyta) А. Г. Десницкий СанктПетербургский государственный университет, СанктПетербург, Россия [email protected]; [email protected] Резюме. В последние годы в мировой литературе описано более десяти новых видов колониальных вольвоксовых водорослей. В настоящем обзоре критически обсуждаются опубликованные данные по таксономии, географическому распространению и проблеме вида в этой группе водорослей, главным образом из родов Gonium, Pandorina, Eudorina и Volvox. Суще ствуют как космополитные виды вольвоксовых, так и виды с локальным или дизъюнктивным распространением. С другой стороны, описание новых криптических таксонов в некоторых родах семейства Volvocaceae, таких как Pandorina и Volvox, усложняет подготовку всесторон него обзора по их географии. -
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ISSN 2519-8513 (Print) Biosystems ISSN 2520-2529 (Online) Biosyst. Divers., 2021, 29(1), 59–66 Diversity doi: 10.15421/012108 Algal and cyanobacterial diversity in saline rivers of the Elton Lake Basin (Russia) studied via light microscopy and next-generation sequencing M. E. Ignatenko, E. A. Selivanova, Y. A. Khlopko, T. N. Yatsenko-Stepanova Institute for Cellular and Intracellular Symbiosis of the Ural Branch of the Russian Academy of Sciences, Orenburg, Russia Article info Ignatenko, M. E., Selivanova, E. A., Khlopko, Y. A., & Yatsenko-Stepanova, T. N. (2021). Algal and cyanobacterial diversity in saline Received 16.01.2021 rivers of the Elton Lake Basin (Russia) studied via light microscopy and next-generation sequencing. Biosystems Diversity, 29(1), Received in revised form 59–66. doi:10.15421/012108 20.02.2021 Accepted 22.02.2021 Naturally saline rivers are known in various regions of the world. Saline rivers with a salinity gradient from the source to the mouth are particularly interesting, because the range of salinity is the structure-forming factor of the hydrobiont assemblage. Such rivers are Institute for Cellular represented by saline rivers of the Elton Lake Basin in Volgograd region of Russia (the Bolshaya Samoroda River and the Malaya Samo- and Intracellular Symbiosis roda River). Herein, we analyzed taxonomic structure and species diversity of microalgae and Cyanobacteria of the saline rivers flowing of the Ural Branch into the Elton Lake by light microscopy and next-generation sequencing. The differences and possible causes of inconsistencies in the of the Russian Academy of Sciences, results obtained by these methods are discussed. -
18S Ribosomal RNA Gene Phylogeny of a Colonial Volvocalean Lineage (Tetrabaenaceae-Goniaceae-Volvocaceae, Volvocales, Chlorophyceae) and Its Close Relatives
J. Jpn. Bot. 91 Suppl.: 345–354 (2016) 18S Ribosomal RNA Gene Phylogeny of a Colonial Volvocalean Lineage (Tetrabaenaceae-Goniaceae-Volvocaceae, Volvocales, Chlorophyceae) and Its Close Relatives a,b, a,b a,b Takashi NAKADA *, Takuro ITO and Masaru TOMITA aInstitute for Advanced Biosciences, Keio University, Kakuganji, Tsuruoka, Yamagata, 997-0052 JAPAN; bSystems Biology Program, Graduate School of Media and Governance, Keio University, Fujisawa, Kanagawa, 252-0882 JAPAN; *Corresponding author: [email protected] (Accepted on January 19, 2016) The lineage of colonial green algae consisting of Tetrabaenaceae, Goniaceae, and Volvocaceae (TGV-clade) belongs to the clade Reinhardtinia within Volvocales (Chlorophyceae). Reinhardtinia is closely related to some species in the unicellular genera Chlamydomonas and Vitreochlamys. Although 18S rRNA gene sequences are preferred phylogenetic markers for many volvocalean species, phylogenetic relationships among the TGV-clade and its relatives have been examined mainly based on chloroplast genes and ITS2 sequences. To determine the candidate unicellular sister, 18S rRNA gene sequences of 41 species of the TGV-clade and its relatives were newly determined, and single and 6-gene phylogenetic analyses performed. No unicellular sister was determined by 18S rRNA gene analyses, but 6 unicellular clades and 11 ribospecies were recognized as candidates. Five of the candidate lineages and 27 taxa of the TGV-clade were examined by 6-gene phylogeny, revealing one clade including Chlamydomonas reinhardtii, Chlamydomonas debaryana, and Vitreochlamys ordinata to be more closely related than that containing Vitreochlamys aulata and Vitreochlamys pinguis. Key words: 18S rRNA, colonial, green algae, molecular phylogeny, unicellular, Volvocales. Tetrabaenaceae, Goniaceae, and cells) 8- to 50,000-celled genera (Pandorina, Volvocaceae constitute a colonial green Volvulina, Platydorina, Colemanosphaera, algal clade (TGV-clade) within Volvocales Yamagishiella, Eudorina, Pleodorina, and (Chlorophyceae), and include simple to Volvox). -
Algal Database
ALGAL FLORA OF TAMILNADU Introduction Algae are the photosynthetic organisms that converted the anaerobic atmosphere of the earth into an aerobic atmosphere by their process of oxygenic photo-phosphorylation. These algae that started to appear on earth 2.5 Ga λ (=years x 10 9 λ) ago evolved into different groups of plants in the course of evolutionary process (Cloud, 1976; South and Whittick, 1987). They are still considered very important because they are an excellent source of single cell protein (Shelef and Soeder, 1980), hydrocarbons (Ben- Amotz and Auron, 1980), biogas, polysaccharides such as agar-agar, alginic acid, carrageenin (McCandless, 1981), antibiotics (Hoppe, 1979; Fenical, 1975), colouring pigments (Venkataraman and Becker, 1985), important medicines (Schwimmer and Schwimmer, 1964). Phytoplanktons that include algae as their exclusive constituent are directly related to fish populations of the oceans and thereby control the availability of ‘sea food’. The level of pollution of inland waterbodies can be evaluated by studying the algae present in them (Palmer, 1968; Mohapatra and Mohanty, 1992). Algae also cause many inconvenience to us. These include their ability to produce water blooms, toxins (Codd et al ., 1995) and diseases (Stein and Borden, 1984; Beskow, 1978; Legge and Rosencrantz, 1932). All these stress the need for knowing the algae present in our environment for the following reasons: 1. To utilize their potential as a source of protein, pigments, vitamins and minerals, medicines, bio-fuels and bio-fertilizers; 2. To evaluate the degree pollution in aquatic environments; 3. To make use of them for removal of toxic chemicals and heavy metals from industrial effluents; 4. -
Phylogeny and Molecular Evolution of the Green Algae
Phylogeny and molecular evolution of the green algae Frédérik Leliaert, David Smith, Hervé Moreau, Matthew Herron, Heroen Verbruggen, Charles Delwiche, Olivier de Clerck To cite this version: Frédérik Leliaert, David Smith, Hervé Moreau, Matthew Herron, Heroen Verbruggen, et al.. Phylogeny and molecular evolution of the green algae. Critical Reviews in Plant Sciences, 2012, 31 (1), pp.1-46. 10.1080/07352689.2011.615705. hal-01590252 HAL Id: hal-01590252 https://hal.archives-ouvertes.fr/hal-01590252 Submitted on 19 Sep 2017 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. postprint Leliaert, F., Smith, D.R., Moreau, H., Herron, M.D., Verbruggen, H., Delwiche, C.F., De Clerck, O., 2012. Phylogeny and molecular evolution of the green algae. Critical Reviews in Plant Sciences 31: 1-46. doi:10.1080/07352689.2011.615705 Phylogeny and Molecular Evolution of the Green Algae Frederik Leliaert1, David R. Smith2, Hervé Moreau3, Matthew Herron4, Heroen Verbruggen1, Charles F. Delwiche5, Olivier De Clerck1 1 Phycology Research Group, Biology Department, Ghent -
Floristicko-Ekologická Studie Oblasti Bystřicka Se Zaměřením Na Ekologii
Jiho česká univerzita v Českých Bud ějovicích Přírodov ědecká fakulta Floristicko-ekologická studie oblasti Byst řicka se zam ěř ením na ekologii zelených volvokálních řas Bakalá řská práce David Hnátek Školitel: Mgr. Josef Jurá ň České Bud ějovice 2016 Hnátek, D. 2016. Floristicko-ekologická studie v oblasti Byst řicka se zam ěř ením na ekologii zelených volvokálních řas . [Floristic-ecological study in the Byst řice area with focus on the ecology of green volvocean algae, BSc. Thesis, in Czech] The University of South Bohemia, Faculty of Sciense, České Bud ějovice, 94 pp. Annotation: Since 1889 twenty-two different species of colonial algae from the order Volvocales have been found in the Czech Republic according to the available algological literature. In this work the morphology and ecology of these species is described in detail. Besides investigating the literature resources, I performed my own floristic research of twenty ponds near Byst řice u Benešova. Phytoplankton samples from these ponds were taken in spring, summer, and autumn of years 2014 and 2015 using phytoplankton net and at the same time the environmental characteristics such as pH, conductivity, water transparency, temperature, and degree of shading were measured. Cyanobacteria and algae in the samples were identified to the lowest possible taxonomic level and their relative abundance was assessed. The differences in species composition between ponds and between seasons were compared using basic statistical methods and relationship between environmental factors and species composition was studied. Prohlašuji, že svoji bakalá řskou práci jsem vypracoval samostatn ě pouze s použitím pramen ů a literatury uvedených v seznamu citované literatury. -
Phylogeny and Molecular Evolution of the Green Algae
Critical Reviews in Plant Sciences, 31:1–46, 2012 Copyright C Taylor & Francis Group, LLC ISSN: 0735-2689 print / 1549-7836 online DOI: 10.1080/07352689.2011.615705 Phylogeny and Molecular Evolution of the Green Algae Frederik Leliaert,1 David R. Smith,2 HerveMoreau,´ 3 Matthew D. Herron,4 Heroen Verbruggen,1 Charles F. Delwiche,5 and Olivier De Clerck1 1Phycology Research Group, Biology Department, Ghent University 9000, Ghent, Belgium 2Canadian Institute for Advanced Research, Evolutionary Biology Program, Department of Botany, University of British Columbia, Vancouver, British Columbia V6T 1Z4, Canada 3Observatoire Oceanologique,´ CNRS–Universite´ Pierre et Marie Curie 66651, Banyuls sur Mer, France 4Department of Zoology, University of British Columbia, Vancouver, British Columbia V6T 1Z4, Canada 5Department of Cell Biology and Molecular Genetics and the Maryland Agricultural Experiment Station, University of Maryland, College Park, MD 20742, USA Table of Contents I. THE NATURE AND ORIGINS OF GREEN ALGAE AND LAND PLANTS .............................................................................2 II. GREEN LINEAGE RELATIONSHIPS ..........................................................................................................................................................5 A. Morphology, Ultrastructure and Molecules ...............................................................................................................................................5 B. Phylogeny of the Green Lineage ...................................................................................................................................................................6 -
Lothar Krienitz (Stand September 2016)
Curriculum vitae Lothar Krienitz (Stand September 2016) Lothar Krienitz wurde am 14. Juni 1949 in Bernburg geboren. Sein Arbeitsgebiet ist die Algenkunde mit Fokus auf Grünalgen, Gelbgrünalgen und Cyanobakterien, ihrer Systematik, Ökologie und Massenkultur. Frühe Motivation erfuhr er besonders durch tschechische und slowakische Algologen, wie Hanus Ettl, Bohuslav Fott, Frantšek Hindák und Jiři Komárek. Arbeitsstationen von Lothar Krienitz waren: Pädagogische Hochschule Köthen (Studium, Promotion, Lehre in Kryptogamenkunde und Botanik), Universität Kischinjow (Zusatzstudium über Mikroalgen), Universität Rostock (Habilitation), Zentralinstitut für Mikrobiologie und Experimentelle Therapie Jena, Leibniz-Institut für Gewässerökologie und Binnenfischerei Berlin/Stechlin (Leiter des Labors für Phykologie und der Algenstammsammlung), Humboldt-Universität zu Berlin (Externer Lehrbeauftragter), Kenyatta University Nairobi (Gastwissenschaftler). Er ist Mitherausgeber der Süßwasserflora von Mitteleuropa (Springer Verlag Berlin Heidelberg). Sein besonderes Interesse erregte die grüne Kugelalge Chlorella und ihre weitläufige Verwandtschaft. Er ist Mitautor mehrerer Gattungen und Arten der Chlorellales. Mit der Entdeckung der Gattung Parachlorella und des Parachlorella-Clades (Trebouxiophyceae) durch seine Arbeitsgruppe wurde eine neue Phase in der Systematik des Verwandtschaftskreises von Chlorella eingeleitet. In seinen Arbeiten wurde gezeigt, dass einige der auffälligen morphologischen Merkmale wie Stachel- und Schleimbildung Anpassungen an ökologische -
The Probiotics of Biofuel: a Metagenomic Study of Microalgae Grown for Fuel Production
ABSTRACT Title of Thesis: THE PROBIOTICS OF BIOFUEL: A METAGENOMIC STUDY OF MICROALGAE GROWN FOR FUEL PRODUCTION Samuel Russell Major, Master of Science, 2018 Thesis Directed By: Dr. Russell T. Hill, Professor, Institute of Marine and Environmental Technology, University of Maryland Center for Environmental Science Ponds in Frederick, MD were fertilized with chicken manure to increase the nutrient load in the water and stimulate microalgal growth. Nutrient analyses indicate that fertilization results in significant increases in the DOC, TDN, and TDP. The bacterial and eukaryotic microalgal communities were analyzed using 16S and 18S rRNA gene sequencing, respectively. Communities were analyzed pre-fertilization and for 15 days following fertilization. Molecular data reveals a decrease in diversity as microalgal blooms form. The microalgal density increased following fertilization, with enrichment for the Chlamydomonadales order. Prior to fertilization the bacterial communities were dominated by five phyla: Actinobacteria, Bacteroidetes, Cyanobacteria, Proteobacteria, and Verrucomicrobia. Dominant bacterial genera post-fertilization included Flavobacterium, Limnohabitans, and Polynucleobacter. Bacteria isolated from the ponds were screened for effects on Scenedesmus sp. HTB1 to identify bacteria that either enhance or inhibit microalgal growth. The growth- promoting bacteria were closely related to bacteria found to be enriched during microalgal bloom formation. THE PROBIOTICS OF BIOFUEL: A METAGENOMIC STUDY OF MICROALGAE GROWN FOR FUEL PRODUCTION by Samuel Russell Major Thesis submitted to the Faculty of the Graduate School of the University of Maryland, College Park, in partial fulfillment of the requirements for the degree of Master of Science 2018 Advisory Committee: Professor Russell T. Hill, Chair Professor Feng Chen Associate Professor Yantao Li © Copyright by Samuel Russell Major 2018 Dedication I would like to dedicate this work to my mother and father for their unwavering support for all my endeavors. -
(And Tertiary) Structure of the ITS2 and Its Application for Phylogenetic Tree Reconstructions and Species Identification
Secondary (and tertiary) structure of the ITS2 and its application for phylogenetic tree reconstructions and species identification vorgelegt von Dipl. Biol. Alexander Keller Würzburg, 2010 Kumulative Dissertation zur Erlangung des naturwissenschaftlichen Doktorgrades (Dr. rer. nat.) der Bayerischen Julius-Maximilians-Universität Würzburg Einreichung: in Würzburg Mitglieder der Promotionskommission: Vorsitzender: Prof. Thomas Dandekar 1. Gutachter: Prof. Thomas Dandekar 2. Gutachter: Prof. Ingolf Steffan-Dewenter Promotionskolloquium: in Würzburg Aushändigung Doktorurkunde: in Würzburg iii TABLE OF CONTENTS Acknowledgements........................................ vii Summary..............................................viii Zusammenfassung ........................................ ix I General Introduction1 II Materials and Methods9 1 Materials 11 2 Bioinformatic tools 13 2.1 Annotation Tool....................................... 13 3 Bioinformatic approaches 15 3.1 HMM-Annotation...................................... 15 3.2 Secondary Structure Prediction.............................. 15 3.3 Tertiary Structure Prediction............................... 16 4 Phylogenetic procedures 17 4.1 Alignments.......................................... 17 4.2 Substitution model selection................................ 17 4.3 Tree reconstructions.................................... 18 4.4 CBC analyses........................................ 18 4.5 Tree viewers......................................... 18 5 Simulations 21 5.1 Simulations........................................ -
Ui Annotated Key to the Identification of Commonly Occurring and Dominant Genera of Algae Observed in the Phytoplankton of the United States
ui Annotated Key to the Identification of Commonly Occurring and Dominant Genera of Algae Observed in the Phytoplankton of the United States GEOLOGICAL SURVEY WATER-SUPPLY PAPER 2079 An Annotated Key to the Identification of Commonly Occurring and Dominant Genera of Algae Observed in the Phytoplankton of the United States By PHILLIP E. GREESON GEOLOGICAL SURVEY WATER-SUPPLY PAPER 2079 UNITED STATES GOVERNMENT PRINTING OFFICE, WASHINGTON: 1982 UNITED STATES DEPARTMENT OF THE INTERIOR JAMES G. WATT, Secretary GEOLOGICAL SURVEY Dallas L. Peck, Director Library of Congress catalog-card No. 81-600168 For sale by the Superintendent of Documents, U.S. Government Printing Office Washington, D.C. 20402 CONTENTS Page Abstract_______________________________________ 1 Introduction _________________________________________ 1 Acknowledgment _ ___________________________________ 3 Taxonomic key to the identification of commonly occurring and dominant genera of algae observed in the phytoplankton of the United States ___________ 9 Descriptions of the genera _______________________________ 14 Chlorophyta ______________________________________ 14 Actinastrum __________________________________________________ 14 Ankistrodesmus _______________________________________________ 16 Chlamydomonas _______________________________________________ 18 Chodatella ____________________________________________________ 20 Coelastrum ___________________________________________________ 22 Cosmarium ___________________________________________________ 24 Crucigenia ___________________________________________________