Lothar Krienitz (Stand September 2016)
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Contribution of the Calcifying Green Alga Phacotus Lenticularis to Lake Carbonate Sequestration
Technische Universität München Wissenschaftszentrum Weihenstephan für Ernährung, Landnutzung und Umwelt Lehrstuhl für Aquatische Systembiologie Contribution of the calcifying green alga Phacotus lenticularis to lake carbonate sequestration Sebastian Lenz Vollständiger Abdruck der von der Fakultät Wissenschaftszentrum Weihenstephan für Ernährung, Landnutzung und Umwelt der Technischen Universität München zur Erlangung des akademischen Grades eines Doktors der Naturwissenschaften genehmigten Dissertation. Vorsitzender: Prof. Dr. Johannes Kollmann Prüfer der Dissertation: 1. Prof. Dr. Jürgen Geist 2. apl. Prof. Dr. Tanja Gschlößl Die Dissertation wurde am 21.01.2020 bei der Technischen Universität München eingereicht und durch die Fakultät Wissenschaftszentrum Weihenstephan für Ernährung, Landnutzung und Umwelt am 23.04.2020 angenommen. So remember to look up at the stars and not down at your feet. Try to make sense of what you see and wonder about what makes the universe exist. Be curious. And however difficult life may seem, there is always something you can do and succeed at. It matters that you don’t just give up. Professor Stephen Hawking (y 14 March 2018) Contents Preface 10 1 Introduction 12 1.1 Carbon cycling and carbonate-water system in alkaline lakes . 12 1.2 Biogenic calcite precipitation . 14 1.3 Calcifying phytoplankton Phacotus lenticularis . 15 1.4 Objectives . 18 1.5 Materials and Methods . 19 1.5.1 Study sites and monitoring concept . 19 1.5.2 Sampling for representative monitoring . 21 1.5.3 Carbonate measurements . 23 1.5.4 Sediment core analysis . 28 2 Calcite production by the calcifying green alga Phacotus lenticularis 31 2.1 Abstract . 31 2.2 Author contributions . 32 2.3 Introduction . -
Old Woman Creek National Estuarine Research Reserve Management Plan 2011-2016
Old Woman Creek National Estuarine Research Reserve Management Plan 2011-2016 April 1981 Revised, May 1982 2nd revision, April 1983 3rd revision, December 1999 4th revision, May 2011 Prepared for U.S. Department of Commerce Ohio Department of Natural Resources National Oceanic and Atmospheric Administration Division of Wildlife Office of Ocean and Coastal Resource Management 2045 Morse Road, Bldg. G Estuarine Reserves Division Columbus, Ohio 1305 East West Highway 43229-6693 Silver Spring, MD 20910 This management plan has been developed in accordance with NOAA regulations, including all provisions for public involvement. It is consistent with the congressional intent of Section 315 of the Coastal Zone Management Act of 1972, as amended, and the provisions of the Ohio Coastal Management Program. OWC NERR Management Plan, 2011 - 2016 Acknowledgements This management plan was prepared by the staff and Advisory Council of the Old Woman Creek National Estuarine Research Reserve (OWC NERR), in collaboration with the Ohio Department of Natural Resources-Division of Wildlife. Participants in the planning process included: Manager, Frank Lopez; Research Coordinator, Dr. David Klarer; Coastal Training Program Coordinator, Heather Elmer; Education Coordinator, Ann Keefe; Education Specialist Phoebe Van Zoest; and Office Assistant, Gloria Pasterak. Other Reserve staff including Dick Boyer and Marje Bernhardt contributed their expertise to numerous planning meetings. The Reserve is grateful for the input and recommendations provided by members of the Old Woman Creek NERR Advisory Council. The Reserve is appreciative of the review, guidance, and council of Division of Wildlife Executive Administrator Dave Scott and the mapping expertise of Keith Lott and the late Steve Barry. -
Catálogo De Las Algas Y Cianoprocariotas Dulciacuícolas De Cuba
CATÁLOGO DE LAS ALGAS Y CIANOPROCARIOTAS DULCIACUÍCOLAS DE CUBA. EDITORIAL Augusto Comas González UNIVERSO o S U R CATÁLOGO DE LAS ALGAS Y CIANOPROCARIOTAS DULCIACUÍCOLAS DE CUBA. 1 2 CATÁLOGO DE LAS ALGAS Y CIANOPROCARIOTAS DULCIACUÍCOLAS DE CUBA. Augusto Comas González 3 Dirección Editorial: MSc. Alberto Valdés Guada Diseño: D.I. Roberto C. Berroa Cabrera Autor: Augusto Comas González Compilación y edición científica: Augusto Comas González © Reservados todos los derechos por lo que no se permite la reproduc- ción total o parcial de este libro. Editorial UNIVERSO SUR Universidad de Cienfuegos Carretera a Rodas, Km. 4. Cuatro Caminos Cienfuegos, CUBA © ISBN: 978-959-257-228-7 4 Indice INTRODUCCIÓN 7 CYANOPROKARYOTA 9 Clase Cyanophyceae 9 Orden Chroococcales Wettstein 1923 9 Orden Oscillatoriales Elenkin 1934 15 Orden Nostocales (Borzi) Geitler 1925 19 Orden Stigonematales Geitler 1925 22 Clase Chrysophyceae 23 Orden Chromulinales 23 Orden Ochromonadales 23 Orden Prymnesiales 24 Clase Xanthophyceae (= Tribophyceae) 24 Orden Mischococcales Pascher 1913 24 Orden Tribonematales Pascher 1939 25 Orden Botrydiales 26 Orden Vaucheriales 26 Clase Dinophyceae 26 Orden Peridiniales 26 Clase Cryptophyceae 27 Orden Cryptomonadales 27 Clase Rhodophyceae Ruprecht 1851 28 Orden Porphyridiales Kylin 1937 28 Orden Compsopogonales Skuja 1939 28 Orden Nemalionales Schmitz 1892 28 Orden Hildenbrandiales Pueschel & Cole 1982) 29 Orden Ceramiales 29 Clase Glaucocystophyceae Kies et Kremer 1989 29 Clase Euglenophyceae 29 Orden Euglenales 29 Clase Bacillariophyceae 34 Orden Centrales 34 Orden Pennales 35 Clase Prasinophyceae Chadefaud 1950 50 Orden Polyblepharidales Korš. 1938 50 Orden Tetraselmidales Ettl 1983 51 Clase Chlamydophyceae Ettl 1981 51 Orden Chlamydomonadales Frtisch in G.S. West 1927 51 5 Orden Volvocales Oltmanns 1904 52 Orden Chlorococcales Marchand 1895 Orth. -
Hidden Diversity of Plankton in the Soda Lake Nakuru, Kenya, During A
Hydrobiologia (2013) 702:95–103 DOI 10.1007/s10750-012-1310-y PRIMARY RESEARCH PAPER Hidden diversity of eukaryotic plankton in the soda lake Nakuru, Kenya, during a phase of low salinity revealed by a SSU rRNA gene clone library Wei Luo • Kiplagat Kotut • Lothar Krienitz Received: 12 July 2012 / Revised: 28 August 2012 / Accepted: 31 August 2012 / Published online: 16 September 2012 Ó Springer Science+Business Media B.V. 2012 Abstract A SSU rRNA gene clone library was Our findings reveal a hidden diversity, which would constructed to establish the diversity of eukaryotic not have been detected by traditional observations. plankton in the African soda lake Nakuru during a phase of low salinity (9.7 ppt = hyposaline). Nor- Keywords Chlorophyta Á Clone library Á Lake mally, the lake is mesosaline (up to 50 ppt) and its Nakuru Á Lesser Flamingo Á Phytoflagellates Á phytoplankton is dominated by few species of cyano- Soda lakes Á SSU rRNA bacteria, in particular Arthrospira fusiformis, which is the main food resource of Lesser Flamingos. Our study recovered a unique phytoplankton species composi- Introduction tion characterized by a high diversity of monadoid and coccoid green algae. Out of 77 clones detected, 52 The phytoplankton of saline-alkaline lakes in the Great belonged to Chlorophyta. Many of the chlorophytes African Rift Valley usually is dominated by cyano- were transported from the catchment area into the lake bacteria, mainly Arthrospira fusiformis (Voronichin) through small seasonal rivers and an outflow of the Koma´rek et Lund (often erroneously identified as Nakuru town sewage treatment plant. Other phyloge- ‘‘Spirulina platensis’’), which forms the food base for netic groups detected were Fungi, Cryptophyta, hundreds of thousands of Lesser Flamingos (Phoenic- Jakobida, Alveolata, Stramenopiles, and Metazoa. -
Imgim21 [Ug Cl11 [Mg C/M?I [Ug Cl11 [Mg C/M21 [Ug Cl11 Img C/M21 [Ug Cill Img Clm21 Median 54,L 7,7 1,5 02 32 0,5 3,O 0,4 46,4 6,6
.. Lebensräume polare On the ecology of racteristics, se other aquatic habi Marina Car Ber. Polarforsch. Meeresforsch. 40 ISSN 1618 - 3193 Marina Carstens c/o Institut füPolarökologi der UniversitäKiel Wischhofstraß 1-3, Geb. 12 D-24148 Kiel Germany E-mail: [email protected] Diese Arbeit ist die leicht verändert Fassung einer Dissertation, die der Mathematisch-Naturwissenschaftlichen Fakultäder Christian-Albrechts- UniversitäKiel im Juni 2001 vorgelegt wurde. Inhaltsverzeichnis Inhaltsverzeichnis Zusammenfassung Summary Einleitung Lebensräum im Ökosyste Meereis Ökologi der Meereistümpe- Erkenntnisse anderer Autoren Ziel der Untersuchungen Terminologie Untersuchungsgebiet Hydrographie Eisbedeckung Eisverhältnissin den Untersuchungsjahren 1993 und 1994 Material und Methoden Untersuchungsmaterial Meereistümpe Vergleichsstationen: Landtümpeund -Seen, Tümpeauf Gletschern und Eisbergen, Proben aus dem marinen Milieu 3.1.2.1 Schmelzwassertümpeauf Gletschern und Eisbergen 3.1.2.2Landtümpe und -Seen 3.1.2.3Proben aus dem marinen Milieu Untersuchungsmethoden Probennahme und in situ-Messungen (Tem eratur, pH-Wert, Leitfähigkeit Sauerstoffkonzentration, PAR, Dimensionen) Bestimmung der Nährstoffkonzentratione Bestimmung der Salinitä Bestimmung der Chlorophyll a-Konzentrationen Bestimmung der Konzentration des partikuläre organischen Materials (CIN-Analyse) Fixierung und Probenaufbereitung füdie mikroskopische Auswertung Quantitative mikroskopische Auswertung Mikroskopische Analyse, Identifizierung und systematische -
Structural Variation and Evolution of Chloroplast Trnas in Green Algae
Structural variation and evolution of chloroplast tRNAs in green algae Fangbing Qi, Yajing Zhao, Ningbo Zhao, Kai Wang, Zhonghu Li and Yingjuan Wang State Key Laboratory of Biotechnology of Shannxi Province, Key Laboratory of Resource Biology and Biotech- nology in Western China (Ministry of Education), College of Life Science, Northwest University, Xi'an, China ABSTRACT As one of the important groups of the core Chlorophyta (Green algae), Chlorophyceae plays an important role in the evolution of plants. As a carrier of amino acids, tRNA plays an indispensable role in life activities. However, the structural variation of chloroplast tRNA and its evolutionary characteristics in Chlorophyta species have not been well studied. In this study, we analyzed the chloroplast genome tRNAs of 14 species in five categories in the green algae. We found that the number of chloroplasts tRNAs of Chlorophyceae is maintained between 28–32, and the length of the gene sequence ranges from 71 nt to 91 nt. There are 23–27 anticodon types of tRNAs, and some tRNAs have missing anticodons that are compensated for by other types of anticodons of that tRNA. In addition, three tRNAs were found to contain introns in the anti-codon loop of the tRNA, but the analysis scored poorly and it is presumed that these introns are not functional. After multiple sequence alignment, the 9-loop is the most conserved structural unit in the tRNA secondary structure, containing mostly U-U-C-x-A-x-U conserved sequences. The number of transitions in tRNA is higher than the number of transversions. In the replication loss analysis, it was found that green algal chloroplast tRNAs may have undergone substantial gene loss during the course of evolution. -
New Records of Some Phytoplankton for Bangladesh: Class - Chlorophyceae
Bangladesh J. Plant Taxon. 27(1): 79‒83, 2020 (June) © 2020 Bangladesh Association of Plant Taxonomists NEW RECORDS OF SOME PHYTOPLANKTON FOR BANGLADESH: CLASS - CHLOROPHYCEAE *, MD. ALMUJADDADE ALFASANE MALIHA MEHNAZ, ASHIKA AKHTAR, MST. AYESHA, MD. ATAUL GANI1, MAHMOUD MOUSTAFA2, SALLY NEGM3, SHAHIMA ISLAM 4 AND Z.N. TAHMIDA BEGUM Department of Botany, University of Dhaka, Dhaka-1000, Bangladesh Key words: New records; Phytoplankton; Chlorophyceae; Bangladesh. Abstract The paper records 6 species of phytoplankton under the class Chlorophyceae namely, Pteromonas golenkiniana Pascher belonging to Family Phacotaceae; Pediastrum biradiatum var. biradiatum Meyen.belonging to Family Hydrodictyaceae; Scenedesmus alternas var. indicus Hortob. and Scenedesmus quadricauda var. inermis Playfair belonging to Family Scenedesmaceae ; Teilingia excavata (Rafls) Bourelly and Cosmarium vexatum W. West var. vexatum W. West belonging to Family Desmidaceae from Sylhet Division of Bangladesh which are all new records for Bangladesh. Introduction Studies on phytoplanktonic members of Chlorophyceae have been made sporadically from fresh water of Sylhet Division of Bangladesh. So far, there are large number of taxonomic studied of different species of phytoplankton under Class Chlorophyceae made (Alfasane et al. 2019; Abdel-Kareem, 2009; Ahmed et al. 2008; Khondker et al. 2008; Islam and Alfasane2001a,b; 2002a,b; 2005; Islam et al. 1992; Islam 1973; Islam and Begum, 1970). The literature cited above showed that the members of the Chlorophyceae have not been studied from Sylhet Division of Bangladesh. Islam and Irfanullah 2005 have explored some of the genera of tea gardens at Srimangal. The samples were collected from different parts of Shari Goyain River, Piyain River and Madhabpur Lake of Sylhet division. -
7 Systematics of the Green Algae
7989_C007.fm Page 123 Monday, June 25, 2007 8:57 PM Systematics of the green 7 algae: conflict of classic and modern approaches Thomas Pröschold and Frederik Leliaert CONTENTS Introduction ....................................................................................................................................124 How are green algae classified? ........................................................................................125 The morphological concept ...............................................................................................125 The ultrastructural concept ................................................................................................125 The molecular concept (phylogenetic concept).................................................................131 Classic versus modern approaches: problems with identification of species and genera.....................................................................................................................134 Taxonomic revision of genera and species using polyphasic approaches....................................139 Polyphasic approaches used for characterization of the genera Oogamochlamys and Lobochlamys....................................................................................140 Delimiting phylogenetic species by a multi-gene approach in Micromonas and Halimeda .....................................................................................................................143 Conclusions ....................................................................................................................................144 -
Novosti Sistematiki Nizshikh Rastenii 54(2): 299–311
Новости систематики низших растений — Novosti sistematiki nizshikh rastenii 54(2): 299–311. 2020 ALGAE — ВОДОРОСЛИ Problems of species and the features of geographical distribution in colonial volvocine algae (Chlorophyta) A. G. Desnitskiy St. Petersburg State University, St. Petersburg, Russia [email protected]; [email protected] Abstract. More than ten new species of colonial volvocine algae were described in world lite rature during recent years. In present review, the published data on taxonomy, geographical distri bution and the species problem in this group of algae, mainly from the genera Gonium, Pandorina, Eudorina, and Volvox, are critically discussed. There are both cosmopolitan volvocalean species and species with local or disjunct distribution. On the other hand, the description of new cryptic taxa in some genera of the colonial family Volvocaceae, such as Pandorina and Volvox, complicates the preparation of a comprehensive review on their geography. Keywords: Gonium, Pandorina, Volvox, cryptic taxa, reproductive isolation, volvocalean geography. Проблемы вида и особенностей географического распространения у колониальных вольвоксовых водорослей (Chlorophyta) А. Г. Десницкий СанктПетербургский государственный университет, СанктПетербург, Россия [email protected]; [email protected] Резюме. В последние годы в мировой литературе описано более десяти новых видов колониальных вольвоксовых водорослей. В настоящем обзоре критически обсуждаются опубликованные данные по таксономии, географическому распространению и проблеме вида в этой группе водорослей, главным образом из родов Gonium, Pandorina, Eudorina и Volvox. Суще ствуют как космополитные виды вольвоксовых, так и виды с локальным или дизъюнктивным распространением. С другой стороны, описание новых криптических таксонов в некоторых родах семейства Volvocaceae, таких как Pandorina и Volvox, усложняет подготовку всесторон него обзора по их географии. -
Page 1 植物研究雜誌 J. Jpn. Bot. 80: 197-207 (2005) Two Species Of
植物研究雑誌 J. J. Jpn. Bo t. 80: 80: 197-207(2005) Two Species of Chlorogonium (Volvocales ,Chlorophyceae) from Japan Takashi Takashi NAKADA a, Atsusi NAKAZAWA b and Hisayoshi NOZAKI a aDepartment aDepartment of Biological Sciences , Graduate School of Science ,University of Tokyo , Hongo 7-3-1 ,Bunkyo-ku ,Tokyo ,113 ・0033 JAPAN; E 司 mail: nozaki@biol ふ u-tokyo.ac.jp bRIKEN (The Institute of Physical and Chemical Research) , Hirosawa 2-1 ,Wako ,Saitama , 351-0198 JAPAN (Received on December 7,2004) Strains Strains from two species of Chlorogonium were isolated from Japanese soil samples , and and were examined with light and electron microscopy. A molecular phylogeny based on rbcL rbcL sequences was also constructed for these strains. One of the two species ,Chloro- gonium gonium elongatum (P. A. Dang.) France , has not been previously studied in culture from Japan. Japan. The other species was identified as Chlorogonium kasakii Nozaki , which has not been been previously recorded from Japan. Key words: Chlorogonium ,Chlorophyceae ,culture strain ,distribution ,taxonomy. Chlorogonium Ehrenb. (Haematococca- light microscope. These species can be relia- ceae ,Volvocales , Chlorophyceae) is a uni- bly distinguished using an electron micro- cellular cellular genus characterized by its spindle- scope and examination of pyrenoid stability shaped shaped vegetative cells (e. g. ,Smith 1950). under photoheterotrophic culture condition Ettl Ettl (1 980) distinguished this genus from (Nozaki et al. 1998). Therefore , the records Chlamydomonas Ehrenb. by its first trans- of C. euchlorum and C. elongatum from verse verse cell division without protoplasmic ro- Japan 訂 'e to be re 四 assessed using newly iso- tation. -
Phylogenetic Position of the Phacotaceae Within the Chlamydophyceae As Revealed by Analysis of 18S Rdna and Rbcl Sequences
J Mol Evol (1998) 47:420–430 © Springer-Verlag New York Inc. 1998 Phylogenetic Position of the Phacotaceae Within the Chlamydophyceae as Revealed by Analysis of 18S rDNA and rbcL Sequences D. Hepperle,1 H. Nozaki,2 S. Hohenberger,3 V.A.R. Huss,3 E. Morita,2 L. Krienitz1 1 Institute of Freshwater Ecology & Inland Fisheries, Department of Limnology of Stratified Lakes, Alte Fischerhu¨tte 2, D-16775 Neuglobsow, Germany 2 University of Tokyo, Department of Biological Sciences, Graduate School of Science, Hongo, Bunkyo, Tokyo 113, Japan 3 University of Erlangen, Institute of Botany and Pharmaceutical Biology, Staudtstr. 5, D-91058 Erlangen, Germany Received: 9 June 1997 / Accepted: 17 October 1997 Abstract. Four genera of the Phacotaceae (Phacotus, and ഛ86.6% in the rbcL gene. It showed major similari- Pteromonas, Wislouchiella, Dysmorphococcus), a family ties to the 18S rDNA of Dunaliella salina, with 95.3%, of loricated green algal flagellates within the Volvocales, and to the rbcL sequence of Chlamydomonas tetragama, were investigated by means of transmission electron mi- with 90.3% sequence homology. Additionally, the croscopy and analysis of the nuclear encoded small- Phacotaceae sensu stricto exclusively shared 10 (rbcL: 4) subunit ribosomal RNA (18S rRNA) genes and the plas- characters which were present neither in other Chlam- tid-encoded rbcL genes. Additionally, the 18S rDNA of ydomonadales nor in Dysmorphococcus globosus. Dif- Haematococcus pluvialis and the rbcL sequences of ferent phylogenetic analysis methods confirmed the hy- Chlorogonium elongatum, C. euchlorum, Dunaliella pothesis that the Phacotaceae are polyphyletic. The parva, Chloromonas serbinowii, Chlamydomonas ra- Phacotaceae sensu stricto form a stable cluster with af- diata, and C. -
18S Ribosomal RNA Gene Phylogeny of a Colonial Volvocalean Lineage (Tetrabaenaceae-Goniaceae-Volvocaceae, Volvocales, Chlorophyceae) and Its Close Relatives
J. Jpn. Bot. 91 Suppl.: 345–354 (2016) 18S Ribosomal RNA Gene Phylogeny of a Colonial Volvocalean Lineage (Tetrabaenaceae-Goniaceae-Volvocaceae, Volvocales, Chlorophyceae) and Its Close Relatives a,b, a,b a,b Takashi NAKADA *, Takuro ITO and Masaru TOMITA aInstitute for Advanced Biosciences, Keio University, Kakuganji, Tsuruoka, Yamagata, 997-0052 JAPAN; bSystems Biology Program, Graduate School of Media and Governance, Keio University, Fujisawa, Kanagawa, 252-0882 JAPAN; *Corresponding author: [email protected] (Accepted on January 19, 2016) The lineage of colonial green algae consisting of Tetrabaenaceae, Goniaceae, and Volvocaceae (TGV-clade) belongs to the clade Reinhardtinia within Volvocales (Chlorophyceae). Reinhardtinia is closely related to some species in the unicellular genera Chlamydomonas and Vitreochlamys. Although 18S rRNA gene sequences are preferred phylogenetic markers for many volvocalean species, phylogenetic relationships among the TGV-clade and its relatives have been examined mainly based on chloroplast genes and ITS2 sequences. To determine the candidate unicellular sister, 18S rRNA gene sequences of 41 species of the TGV-clade and its relatives were newly determined, and single and 6-gene phylogenetic analyses performed. No unicellular sister was determined by 18S rRNA gene analyses, but 6 unicellular clades and 11 ribospecies were recognized as candidates. Five of the candidate lineages and 27 taxa of the TGV-clade were examined by 6-gene phylogeny, revealing one clade including Chlamydomonas reinhardtii, Chlamydomonas debaryana, and Vitreochlamys ordinata to be more closely related than that containing Vitreochlamys aulata and Vitreochlamys pinguis. Key words: 18S rRNA, colonial, green algae, molecular phylogeny, unicellular, Volvocales. Tetrabaenaceae, Goniaceae, and cells) 8- to 50,000-celled genera (Pandorina, Volvocaceae constitute a colonial green Volvulina, Platydorina, Colemanosphaera, algal clade (TGV-clade) within Volvocales Yamagishiella, Eudorina, Pleodorina, and (Chlorophyceae), and include simple to Volvox).